| Year |
Citation |
Score |
| 2023 |
MacNeill BN, Ortiz-Brunel JP, Contreras AR, Ruiz-Sánchez E, Navarro-Moreno J, Hofford NP, McKain MR. Floral diversity and pollination syndromes in Agave subgenus Manfreda. Integrative and Comparative Biology. PMID 37673672 DOI: 10.1093/icb/icad118 |
0.328 |
|
| 2023 |
Deb SK, Edger PP, Pires JC, McKain MR. Patterns, mechanisms, and consequences of homoeologous exchange in allopolyploid angiosperms: A genomic and epigenomic perspective. The New Phytologist. PMID 37010081 DOI: 10.1111/nph.18927 |
0.349 |
|
| 2022 |
Timilsena PR, Wafula EK, Barrett CF, Ayyampalayam S, McNeal JR, Rentsch JD, McKain MR, Heyduk K, Harkess A, Villegente M, Conran JG, Illing N, Fogliani B, Ané C, Pires JC, et al. Phylogenomic resolution of order- and family-level monocot relationships using 602 single-copy nuclear genes and 1375 BUSCO genes. Frontiers in Plant Science. 13: 876779. PMID 36483967 DOI: 10.3389/fpls.2022.876779 |
0.331 |
|
| 2022 |
Marchant DB, Chen G, Cai S, Chen F, Schafran P, Jenkins J, Shu S, Plott C, Webber J, Lovell JT, He G, Sandor L, Williams M, Rajasekar S, Healey A, ... ... McKain MR, et al. Dynamic genome evolution in a model fern. Nature Plants. PMID 36050461 DOI: 10.1038/s41477-022-01226-7 |
0.398 |
|
| 2022 |
Huang W, Zhang L, Columbus JT, Hu Y, Zhao Y, Tang L, Guo Z, Chen W, McKain M, Bartlett M, Huang CH, Li DZ, Ge S, Ma H. A well-supported nuclear phylogeny of Poaceae and implications for the evolution of C 4 photosynthesis. Molecular Plant. PMID 35093593 DOI: 10.1016/j.molp.2022.01.015 |
0.434 |
|
| 2022 |
Brock JR, Mandáková T, McKain M, Lysak MA, Olsen KM. Chloroplast phylogenomics in Camelina (Brassicaceae) reveals multiple origins of polyploid species and the maternal lineage of C. sativa. Horticulture Research. 9. PMID 35031794 DOI: 10.1093/hr/uhab050 |
0.391 |
|
| 2021 |
Smith CI, McKain MR, Guimond A, Flatz R. Genome-scale data resolves the timing of divergence in Joshua trees. American Journal of Botany. 108: 647-663. PMID 33846972 DOI: 10.1002/ajb2.1633 |
0.344 |
|
| 2020 |
Heyduk K, McAssey EV, Grimwood J, Shu S, Schmutz J, McKain MR, Leebens-Mack J. Hybridization History and Repetitive Element Content in the Genome of a Homoploid Hybrid, (Asparagaceae). Frontiers in Plant Science. 11: 573767. PMID 33519836 DOI: 10.3389/fpls.2020.573767 |
0.4 |
|
| 2020 |
Ramachandran D, McKain MR, Kellogg EA, Hawkins JS. Evolutionary Dynamics of Transposable Elements Following a Shared Polyploidization Event in the Tribe Andropogoneae. G3 (Bethesda, Md.). PMID 32988994 DOI: 10.1534/g3.120.401596 |
0.452 |
|
| 2020 |
Mabry ME, Brose JM, Blischak PD, Sutherland B, Dismukes WT, Bottoms CA, Edger PP, Washburn JD, An H, Hall JC, McKain MR, Al-Shehbaz I, Barker MS, Schranz ME, Conant GC, et al. Phylogeny and multiple independent whole-genome duplication events in the Brassicales. American Journal of Botany. PMID 32830865 DOI: 10.1002/Ajb2.1514 |
0.402 |
|
| 2020 |
Henriquez CL, Abdullah, Ahmed I, Carlsen MM, Zuluaga A, Croat TB, McKain MR. Molecular evolution of chloroplast genomes in Monsteroideae (Araceae). Planta. 251: 1-16. PMID 32112137 DOI: 10.1007/S00425-020-03365-7 |
0.513 |
|
| 2020 |
Henriquez CL, Abdullah, Ahmed I, Carlsen MM, Zuluaga A, Croat TB, McKain MR. Evolutionary dynamics in chloroplast genome of subfamily Aroideae (Araceae). Genomics. PMID 31945463 DOI: 10.1016/J.Ygeno.2020.01.006 |
0.52 |
|
| 2019 |
Bianconi ME, Hackel J, Vorontsova MS, Alberti A, Arthan W, Burke SV, Duvall MR, Kellogg EA, Lavergne S, McKain MR, Meunier A, Osborne CP, Traiperm P, Christin PA, Besnard G. Continued Adaptation of C4 Photosynthesis After an Initial Burst of Changes in the Andropogoneae Grasses. Systematic Biology. PMID 31589325 DOI: 10.1093/Sysbio/Syz066 |
0.393 |
|
| 2019 |
Barrett CF, McKain MR, Sinn BT, Ge XJ, Zhang Y, Antonelli A, Bacon CD. Ancient polyploidy and genome evolution in palms. Genome Biology and Evolution. PMID 31028709 DOI: 10.1093/Gbe/Evz092 |
0.506 |
|
| 2019 |
Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, et al. Author Correction: Origin and evolution of the octoploid strawberry genome. Nature Genetics. PMID 30842601 DOI: 10.1038/S41588-019-0380-4 |
0.306 |
|
| 2019 |
Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, et al. Origin and evolution of the octoploid strawberry genome. Nature Genetics. PMID 30804557 DOI: 10.1038/S41588-019-0356-4 |
0.507 |
|
| 2019 |
Teisher JK, McKain MR, Schaal BA, Kellogg EA. Plastome Phylogenetics of Tribe Eriachneae and Evolution of C4 Photosynthesis in Subfamily Micrairoideae (Poaceae) Systematic Botany. 44: 32-40. DOI: 10.1600/036364419X697877 |
0.384 |
|
| 2019 |
Welker CAD, McKain MR, Vorontsova MS, Peichoto MC, Kellogg EA. Plastome phylogenomics of sugarcane and relatives confirms the segregation of the genus Tripidium (Poaceae: Andropogoneae) Taxon. 68: 246-267. DOI: 10.1002/Tax.12030 |
0.432 |
|
| 2018 |
McAllister CA, McKain MR, Li M, Bookout B, Kellogg EA. Specimen-based analysis of morphology and the environment in ecologically dominant grasses: the power of the herbarium. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 374. PMID 30455217 DOI: 10.1098/Rstb.2017.0403 |
0.413 |
|
| 2018 |
McKain MR, Johnson MG, Uribe-Convers S, Eaton D, Yang Y. Practical considerations for plant phylogenomics. Applications in Plant Sciences. 6: e1038. PMID 29732268 DOI: 10.1002/Aps3.1038 |
0.402 |
|
| 2018 |
Edger PP, McKain MR, Bird KA, VanBuren R. Subgenome assignment in allopolyploids: challenges and future directions. Current Opinion in Plant Biology. 42: 76-80. PMID 29649616 DOI: 10.1016/J.Pbi.2018.03.006 |
0.405 |
|
| 2018 |
Unruh SA, McKain MR, Lee YI, Yukawa T, McCormick MK, Shefferson RP, Smithson A, Leebens-Mack JH, Pires JC. Phylotranscriptomic analysis and genome evolution of the Cypripedioideae (Orchidaceae). American Journal of Botany. PMID 29608785 DOI: 10.1002/Ajb2.1047 |
0.492 |
|
| 2018 |
Saeidi S, McKain MR, Kellogg EA. Robust DNA Isolation and High-throughput Sequencing Library Construction for Herbarium Specimens. Journal of Visualized Experiments : Jove. PMID 29578505 DOI: 10.3791/56837 |
0.317 |
|
| 2018 |
Teisher JK, McKain MR, Schaal BA, Kellogg EA. Polyphyly of Arundinoideae (Poaceae) and evolution of the twisted geniculate lemma awn. Annals of Botany. 120: 725-738. PMID 28645142 DOI: 10.1093/Aob/Mcx058 |
0.435 |
|
| 2017 |
Edger PP, VanBuren R, Colle M, Poorten TJ, Wai CM, Niederhuth CE, Alger EI, Ou S, Acharya CB, Wang J, Callow P, McKain MR, Shi J, Collier C, Xiong Z, et al. Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity. Gigascience. PMID 29253147 DOI: 10.1093/Gigascience/Gix124 |
0.448 |
|
| 2017 |
Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, et al. The asparagus genome sheds light on the origin and evolution of a young Y chromosome. Nature Communications. 8: 1279. PMID 29093472 DOI: 10.1038/S41467-017-01064-8 |
0.312 |
|
| 2017 |
Edger PP, Smith RD, McKain MR, Cooley AM, Vallejo-Marin M, Yuan YW, Bewick AJ, Ji L, Platts AE, Bowman MJ, Childs K, Washburn JD, Schmitz R, Smith GD, Pires JC, et al. Subgenome dominance in an interspecific hybrid, synthetic allopolyploid, and a 140-year- old naturally established neo-allopolyploid monkeyflower. The Plant Cell. PMID 28814644 DOI: 10.1105/Tpc.17.00010 |
0.414 |
|
| 2017 |
Arthan W, McKain MR, Traiperm P, Welker CAD, Teisher JK, Kellogg EA. Phylogenomics of Andropogoneae (Panicoideae: Poaceae) of Mainland Southeast Asia Systematic Botany. 42: 418-431. DOI: 10.1600/036364417X696023 |
0.458 |
|
| 2016 |
McKain MR, McNeal JR, Kellar PR, Eguiarte LE, Pires JC, Leebens-Mack J. Timing of rapid diversification and convergent origins of active pollination within Agavoideae (Asparagaceae). American Journal of Botany. 103: 1717-1729. PMID 27793858 DOI: 10.3732/Ajb.1600198 |
0.421 |
|
| 2016 |
Studer AJ, Schnable JC, Weissmann S, Kolbe AR, McKain MR, Shao Y, Cousins AB, Kellogg EA, Brutnell TP. The draft genome of the C3 panicoid grass species Dichanthelium oligosanthes. Genome Biology. 17: 223. PMID 27793170 DOI: 10.1186/S13059-016-1080-3 |
0.355 |
|
| 2016 |
McKain MR, Hartsock RH, Wohl MM, Kellogg EA. Verdant: automated annotation, alignment, and phylogenetic analysis of whole chloroplast genomes. Bioinformatics (Oxford, England). PMID 27634949 DOI: 10.1093/Bioinformatics/Btw583 |
0.399 |
|
| 2016 |
Heyduk K, McKain MR, Lalani F, Leebens-Mack J. Evolution of a CAM anatomy predates the origins of Crassulacean acid metabolism in the Agavoideae (Asparagaceae). Molecular Phylogenetics and Evolution. 105: 102-113. PMID 27591171 DOI: 10.1016/J.Ympev.2016.08.018 |
0.444 |
|
| 2016 |
Harkess A, Mercati F, Abbate L, McKain M, Pires JC, Sala T, Sunseri F, Falavigna A, Leebens-Mack J. Retrotransposon Proliferation Coincident with the Evolution of Dioecy in Asparagus. G3 (Bethesda, Md.). PMID 27342737 DOI: 10.1534/G3.116.030239 |
0.523 |
|
| 2016 |
Vallejo-Marín M, Cooley AM, Lee MY, Folmer M, McKain MR, Puzey JR. Strongly asymmetric hybridization barriers shape the origin of a new polyploid species and its hybrid ancestor. American Journal of Botany. PMID 27221281 DOI: 10.3732/Ajb.1500471 |
0.398 |
|
| 2016 |
McKain MR, Tang H, McNeal JR, Ayyampalayam S, Davis JI, dePamphilis CW, Givnish TJ, Pires JC, Stevenson DW, Leebens-Mack JH. A phylogenomic assessment of ancient polyploidy and genome evolution across the Poales. Genome Biology and Evolution. PMID 26988252 DOI: 10.1093/Gbe/Evw060 |
0.499 |
|
| 2016 |
Welker CA, Souza-Chies TT, Longhi-Wagner HM, Peichoto MC, McKain MR, Kellogg EA. Multilocus phylogeny and phylogenomics of Eriochrysis P. Beauv. (Poaceae - Andropogoneae): Taxonomic implications and evidence of interspecific hybridization. Molecular Phylogenetics and Evolution. PMID 26947710 DOI: 10.1016/J.Ympev.2016.02.022 |
0.483 |
|
| 2016 |
Schröder S, Mamidi S, Lee R, McKain MR, McClean PE, Osorno JM. Optimization of genotyping by sequencing (GBS) data in common bean (Phaseolus vulgaris L.) Molecular Breeding. 36: 1-9. DOI: 10.1007/S11032-015-0431-1 |
0.364 |
|
| 2015 |
Ming R, VanBuren R, Wai CM, Tang H, Schatz MC, Bowers JE, Lyons E, Wang ML, Chen J, Biggers E, Zhang J, Huang L, Zhang L, Miao W, Zhang J, ... ... McKain MR, et al. The pineapple genome and the evolution of CAM photosynthesis. Nature Genetics. 47: 1435-42. PMID 26523774 DOI: 10.1038/Ng.3435 |
0.444 |
|
| 2015 |
Frank MH, Edwards MB, Schultz ER, McKain MR, Fei Z, Sørensen I, Rose JK, Scanlon MJ. Dissecting the molecular signatures of apical cell-type shoot meristems from two ancient land plant lineages. The New Phytologist. 207: 893-904. PMID 25900772 DOI: 10.1111/Nph.13407 |
0.368 |
|
| 2015 |
Welker CA, Souza-Chies TT, Longhi-Wagner HM, Peichoto MC, McKain MR, Kellogg EA. Phylogenetic analysis of Saccharum s.l. (Poaceae; Andropogoneae), with emphasis on the circumscription of the South American species. American Journal of Botany. 102: 248-63. PMID 25667078 DOI: 10.3732/Ajb.1400397 |
0.413 |
|
| 2015 |
Cannon SB, McKain MR, Harkess A, Nelson MN, Dash S, Deyholos MK, Peng Y, Joyce B, Stewart CN, Rolf M, Kutchan T, Tan X, Chen C, Zhang Y, Carpenter E, et al. Multiple polyploidy events in the early radiation of nodulating and nonnodulating legumes. Molecular Biology and Evolution. 32: 193-210. PMID 25349287 DOI: 10.1093/Molbev/Msu296 |
0.461 |
|
| 2014 |
Estep MC, McKain MR, Vela Diaz D, Zhong J, Hodge JG, Hodkinson TR, Layton DJ, Malcomber ST, Pasquet R, Kellogg EA. Allopolyploidy, diversification, and the Miocene grassland expansion. Proceedings of the National Academy of Sciences of the United States of America. 111: 15149-54. PMID 25288748 DOI: 10.1073/Pnas.1404177111 |
0.52 |
|
| 2014 |
Arias T, Beilstein MA, Tang M, McKain MR, Pires JC. Diversification times among Brassica (Brassicaceae) crops suggest hybrid formation after 20 million years of divergence. American Journal of Botany. 101: 86-91. PMID 24388963 DOI: 10.3732/Ajb.1300312 |
0.346 |
|
| 2014 |
Zomlefer WB, McKain M, Rentsch J. Documentation of the Chromosome Number for Zigadenus glaberrimus (Liliales: Melanthiaceae) and its Significance in the Taxonomy of Tribe Melanthieae Systematic Botany. 39: 411-414. DOI: 10.1600/036364414X680951 |
0.302 |
|
| 2013 |
Khera P, Upadhyaya HD, Pandey MK, Roorkiwal M, Sriswathi M, Janila P, Guo Y, McKain MR, Nagy ED, Knapp SJ, Leebens-Mack J, Conner JA, Ozias-Akins P, Varshney RK. Single nucleotide polymorphism-based genetic diversity in the reference set of peanut (Arachis spp.) by developing and applying cost-effective kompetitive allele specific polymerase chain reaction genotyping assays Plant Genome. 6: 10. DOI: 10.3835/Plantgenome2013.06.0019 |
0.318 |
|
| 2012 |
D'Hont A, Denoeud F, Aury JM, Baurens FC, Carreel F, Garsmeur O, Noel B, Bocs S, Droc G, Rouard M, Da Silva C, Jabbari K, Cardi C, Poulain J, Souquet M, ... ... Mckain MR, et al. The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature. 488: 213-7. PMID 22801500 DOI: 10.1038/Nature11241 |
0.501 |
|
| 2012 |
McKain MR, Wickett N, Zhang Y, Ayyampalayam S, McCombie WR, Chase MW, Pires JC, dePamphilis CW, Leebens-Mack J. Phylogenomic analysis of transcriptome data elucidates co-occurrence of a paleopolyploid event and the origin of bimodal karyotypes in Agavoideae (Asparagaceae). American Journal of Botany. 99: 397-406. PMID 22301890 DOI: 10.3732/Ajb.1100537 |
0.412 |
|
| 2012 |
Steele PR, Hertweck KL, Mayfield D, McKain MR, Leebens-Mack J, Pires JC. Quality and quantity of data recovered from massively parallel sequencing: Examples in Asparagales and Poaceae. American Journal of Botany. 99: 330-48. PMID 22291168 DOI: 10.3732/Ajb.1100491 |
0.433 |
|
| 2012 |
Jiao Y, Leebens-Mack J, Ayyampalayam S, Bowers JE, McKain MR, McNeal J, Rolf M, Ruzicka DR, Wafula E, Wickett NJ, Wu X, Zhang Y, Wang J, Zhang Y, Carpenter EJ, et al. A genome triplication associated with early diversification of the core eudicots. Genome Biology. 13: R3. PMID 22280555 DOI: 10.1186/Gb-2012-13-1-R3 |
0.368 |
|
| 2010 |
Givnish TJ, Ames M, McNeal JR, McKain MR, Steele PR, Depamphilis CW, Graham SW, Pires JC, Stevenson DW, Zomlefer WB, Briggs BG, Duvall MR, Moore MJ, Heaney JM, Soltis DE, et al. Assembling the tree of the monocotyledons: Plastome sequence phylogeny and evolution of Poales Annals of the Missouri Botanical Garden. 97: 584-616. DOI: 10.3417/2010023 |
0.435 |
|
| Show low-probability matches. |