Michael Schatz - Publications

Affiliations: 
2010 Computer Science University of Maryland, College Park, College Park, MD 

218 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Ahmed O, Rossi M, Kovaka S, Schatz MC, Gagie T, Boucher C, Langmead B. Pan-genomic matching statistics for targeted nanopore sequencing. Iscience. 24: 102696. PMID 34195571 DOI: 10.1016/j.isci.2021.102696  1
2021 Pereira L, Sapkota M, Alonge M, Zheng Y, Zhang Y, Razifard H, Taitano NK, Schatz MC, Fernie AR, Wang Y, Fei Z, Caicedo AL, Tieman DM, van der Knaap E. Natural Genetic Diversity in Tomato Flavor Genes. Frontiers in Plant Science. 12: 642828. PMID 34149747 DOI: 10.3389/fpls.2021.642828  0.04
2021 Hulse-Kemp AM, Bostan H, Chen S, Ashrafi H, Stoffel K, Sanseverino W, Li L, Cheng S, Schatz MC, Garvin T, du Toit LJ, Tseng E, Chin J, Iorizzo M, Van Deynze A. An anchored chromosome-scale genome assembly of spinach improves annotation and reveals extensive gene rearrangements in euasterids. The Plant Genome. e20101. PMID 34109759 DOI: 10.1002/tpg2.20101  1
2021 Namazy JA, Schatz M. Contemporary management and treatment strategies for asthma during pregnancy. Expert Review of Respiratory Medicine. PMID 34058955 DOI: 10.1080/17476348.2021.1935243  0.01
2021 Reinbold PAK, Kageorge LM, Schatz MF, Grigoriev RO. Robust learning from noisy, incomplete, high-dimensional experimental data via physically constrained symbolic regression. Nature Communications. 12: 3219. PMID 34050155 DOI: 10.1038/s41467-021-23479-0  0.01
2021 Fouks B, Brand P, Nguyen HN, Herman J, Camara F, Ence D, Hagen D, Hoff KJ, Nachweide S, Romoth L, Walden KK, Guigo R, Stanke M, Narzisi G, Yandell M, ... ... Schatz MC, et al. The genomic basis of evolutionary differentiation among honey bees. Genome Research. PMID 33947700 DOI: 10.1101/gr.272310.120  1
2021 Vornhagen J, Bassis CM, Ramakrishnan S, Hein R, Mason S, Bergman Y, Sunshine N, Fan Y, Holmes CL, Timp W, Schatz MC, Young VB, Simner PJ, Bachman MA. A plasmid locus associated with Klebsiella clinical infections encodes a microbiome-dependent gut fitness factor. Plos Pathogens. 17: e1009537. PMID 33930099 DOI: 10.1371/journal.ppat.1009537  1
2021 Luo G, Nau CL, Crawford WW, Schatz M, Zeiger RS, Koebnick C. Generalizability of an Automatic Explanation Method for Machine Learning Prediction Results on Asthma-Related Hospital Visits in Patients With Asthma: Quantitative Analysis. Journal of Medical Internet Research. 23: e24153. PMID 33856359 DOI: 10.2196/24153  0.01
2021 Ranallo-Benavidez TR, Lemmon Z, Soyk S, Aganezov S, Salerno WJ, McCoy RC, Lippman ZB, Schatz MC, Sedlazeck FJ. Optimized sample selection for cost-efficient long-read population sequencing. Genome Research. PMID 33811084 DOI: 10.1101/gr.264879.120  1
2021 Thielen PM, Wohl S, Mehoke T, Ramakrishnan S, Kirsche M, Falade-Nwulia O, Trovão NS, Ernlund A, Howser C, Sadowski N, Morris CP, Hopkins M, Schwartz M, Fan Y, Gniazdowski V, ... ... Schatz MC, et al. Genomic diversity of SARS-CoV-2 during early introduction into the Baltimore-Washington metropolitan area. Jci Insight. 6. PMID 33749660 DOI: 10.1172/jci.insight.144350  0.01
2021 Chambers CD, Krishnan JA, Alba L, Albano J, Bryant A, Carver M, Cohen LS, Gorodetsky E, Hernandez-Diaz S, Honein MA, Jones BL, Murray RK, Namazy JA, Sahin L, Spong CY, ... ... Schatz M, et al. The Safety of Asthma Medications during Pregnancy and Lactation: Clinical Management and Research Priorities. The Journal of Allergy and Clinical Immunology. PMID 33713765 DOI: 10.1016/j.jaci.2021.02.037  0.01
2021 Xu Z, Green B, Benoit N, Sobel JD, Schatz MC, Wheelan S, Cormack BP. Cell Wall Protein variation, Break Induced Replication, and Subtelomere Dynamics in Candida glabrata. Molecular Microbiology. PMID 33713372 DOI: 10.1111/mmi.14707  0.01
2021 Choi CP, Tay RJ, Starostik MR, Feng S, Moresco JJ, Montgomery BE, Xu E, Hammonds MA, Schatz MC, Montgomery TA, Yates JR, Jacobsen SE, Kim JK. SNPC-1.3 is a sex-specific transcription factor that drives male piRNA expression in . Elife. 10. PMID 33587037 DOI: 10.7554/eLife.60681  0.01
2021 Ostrovsky A, Hillman-Jackson J, Bouvier D, Clements D, Afgan E, Blankenberg D, Schatz MC, Nekrutenko A, Taylor J, Team TG, Lariviere D. Using Galaxy to Perform Large-Scale Interactive Data Analyses-An Update. Current Protocols. 1: e31. PMID 33583104 DOI: 10.1002/cpz1.31  0.01
2021 Mencia-Trinchant N, MacKay MJ, Chin C, Afshinnekoo E, Foox J, Meydan C, Butler D, Mozsary C, Vernice NA, Darby C, Schatz MC, Bailey SM, Melnick AM, Guzman ML, Bolton K, et al. Clonal hematopoiesis before, during, and after human spaceflight. Cell Reports. 34: 108740. PMID 33567281 DOI: 10.1016/j.celrep.2021.108740  1
2021 Chou HC, Bhalla K, Demerdesh OE, Klingbeil O, Hanington K, Aganezov S, Andrews P, Alsudani H, Chang K, Vakoc CR, Schatz MC, McCombie WR, Stillman B. The human Origin Recognition Complex is essential for pre-RC assembly, mitosis and maintenance of nuclear structure. Elife. 10. PMID 33522487 DOI: 10.7554/eLife.61797  1
2020 Zeiger RS, Xie F, Schatz M, Hong BD, Weaver JP, Bali V, Schelfhout J, Chen W. Prevalence and Characteristics of Chronic Cough in Adults Identified by Administrative Data. The Permanente Journal. 24: 1-3. PMID 33482968 DOI: 10.7812/TPP/20.022  0.01
2020 Nelsen LM, Kosinski M, Rizio AA, Jacques L, Schatz M, Stanford RH, Svedsater H. A structured review evaluating content validity of the Asthma Control Test, and its consistency with U.S. guidelines and patient expectations for asthma control. The Journal of Asthma : Official Journal of the Association For the Care of Asthma. 1-15. PMID 33377411 DOI: 10.1080/02770903.2020.1861624  0.01
2020 Zarate S, Carroll A, Mahmoud M, Krasheninina O, Jun G, Salerno WJ, Schatz MC, Boerwinkle E, Gibbs RA, Sedlazeck FJ. Parliament2: Accurate structural variant calling at scale. Gigascience. 9. PMID 33347570 DOI: 10.1093/gigascience/giaa145  1
2020 Palatnick A, Zhou B, Ghedin E, Schatz MC. iGenomics: Comprehensive DNA sequence analysis on your Smartphone. Gigascience. 9. PMID 33284326 DOI: 10.1093/gigascience/giaa138  0.04
2020 Cloutier MM, Baptist AP, Blake KV, Brooks EG, Bryant-Stephens T, DiMango E, Dixon AE, Elward KS, Hartert T, Krishnan JA, Ouellette DR, Pace WD, Schatz M, Skolnik NS, et al. 2020 Focused Updates to the Asthma Management Guidelines: A Report from the National Asthma Education and Prevention Program Coordinating Committee Expert Panel Working Group. The Journal of Allergy and Clinical Immunology. 146: 1217-1270. PMID 33280709 DOI: 10.1016/j.jaci.2020.10.003  0.01
2020 Cloutier MM, Dixon AE, Krishnan JA, Lemanske RF, Pace W, Schatz M. Managing Asthma in Adolescents and Adults: 2020 Asthma Guideline Update From the National Asthma Education and Prevention Program. Jama. PMID 33270095 DOI: 10.1001/jama.2020.21974  0.01
2020 Krishnan JA, Cloutier MM, Schatz M. National Asthma Education and Prevention Program 2020 Guideline Update: Where Do We Go From Here? American Journal of Respiratory and Critical Care Medicine. PMID 33269974 DOI: 10.1164/rccm.202011-4236ED  0.01
2020 Kovaka S, Fan Y, Ni B, Timp W, Schatz MC. Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED. Nature Biotechnology. PMID 33257863 DOI: 10.1038/s41587-020-0731-9  1
2020 Zeiger RS, Schatz M, Hong B, Li Q, Stern JA, Takhar HS, Weaver JP, Bali V, Schelfhout J, Chen W. Patient Reported Burden of Chronic Cough in a Managed Care Organization. The Journal of Allergy and Clinical Immunology. in Practice. PMID 33227523 DOI: 10.1016/j.jaip.2020.11.018  0.01
2020 Luo G, Nau CL, Crawford WW, Schatz M, Zeiger RS, Rozema E, Koebnick C. Developing a Predictive Model for Asthma-Related Hospital Encounters in Patients With Asthma in a Large, Integrated Health Care System: Secondary Analysis. Jmir Medical Informatics. 8: e22689. PMID 33164906 DOI: 10.2196/22689  0.01
2020 Kirsche M, Das A, Schatz MC. Sapling: Accelerating Suffix Array Queries with Learned Data Models. Bioinformatics (Oxford, England). PMID 33107913 DOI: 10.1093/bioinformatics/btaa911  0.01
2020 Sornette D, Mearns E, Schatz M, Wu K, Darcet D. Interpreting, analysing and modelling COVID-19 mortality data. Nonlinear Dynamics. 1-26. PMID 33020681 DOI: 10.1007/s11071-020-05966-z  0.01
2020 Chin CS, Wagner J, Zeng Q, Garrison E, Garg S, Fungtammasan A, Rautiainen M, Aganezov S, Kirsche M, Zarate S, Schatz MC, Xiao C, Rowell WJ, Markello C, Farek J, et al. A diploid assembly-based benchmark for variants in the major histocompatibility complex. Nature Communications. 11: 4794. PMID 32963235 DOI: 10.1038/s41467-020-18564-9  1
2020 Aganezov S, Goodwin S, Sherman RM, Sedlazeck FJ, Arun G, Bhatia S, Lee I, Kirsche M, Wappel R, Kramer M, Kostroff K, Spector DL, Timp W, McCombie WR, Schatz MC. Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing. Genome Research. PMID 32887686 DOI: 10.1101/Gr.260497.119  1
2020 Suri B, Kageorge L, Grigoriev RO, Schatz MF. Capturing Turbulent Dynamics and Statistics in Experiments with Unstable Periodic Orbits. Physical Review Letters. 125: 064501. PMID 32845663 DOI: 10.1103/Physrevlett.125.064501  0.01
2020 Lu M, Litonjua AA, O'Connor GT, Zeiger RS, Bacharier L, Schatz M, Carey VJ, Weiss ST, Mirzakhani H. Effect of early and late prenatal vitamin D and maternal asthma status on offspring asthma or recurrent wheeze. The Journal of Allergy and Clinical Immunology. PMID 32822692 DOI: 10.1016/J.Jaci.2020.06.041  0.01
2020 Thielen PM, Wohl S, Mehoke T, Ramakrishnan S, Kirsche M, Falade-Nwulia O, Trovao NS, Erlund A, Howser C, Sadowski N, Morris P, Hopkins M, Schwartz M, Fan Y, Gniazdowski V, ... ... Schatz MC, et al. Genomic Diversity of SARS-CoV-2 During Early Introduction into the United States National Capital Region. Medrxiv : the Preprint Server For Health Sciences. PMID 32817965 DOI: 10.1101/2020.08.13.20174136  0.01
2020 Kosinski M, Nelsen L, Rizio AA, Lay-Flurrie J, von Maltzahn R, Jacques L, Schatz M, Stanford RH, Svedsater H. Psychometric properties of the Asthma Control Test in 2 randomized clinical trials. The Journal of Allergy and Clinical Immunology. in Practice. PMID 32771685 DOI: 10.1016/J.Jaip.2020.07.040  0.01
2020 Nattestad M, Aboukhalil R, Chin CS, Schatz MC. Ribbon: Intuitive visualization for complex genomic variation. Bioinformatics (Oxford, England). PMID 32766814 DOI: 10.1093/Bioinformatics/Btaa680  1
2020 Zook JM, Hansen NF, Olson ND, Chapman L, Mullikin JC, Xiao C, Sherry S, Koren S, Phillippy AM, Boutros PC, Sahraeian SME, Huang V, Rouette A, Alexander N, Mason CE, ... ... Schatz MC, et al. Author Correction: A robust benchmark for detection of germline large deletions and insertions. Nature Biotechnology. PMID 32699374 DOI: 10.1038/S41587-020-0640-Y  1
2020 Alonge M, Wang X, Benoit M, Soyk S, Pereira L, Zhang L, Suresh H, Ramakrishnan S, Maumus F, Ciren D, Levy Y, Harel TH, Shalev-Schlosser G, Amsellem Z, Razifard H, ... ... Schatz MC, et al. Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato. Cell. PMID 32553272 DOI: 10.1016/J.Cell.2020.05.021  1
2020 Zook JM, Hansen NF, Olson ND, Chapman L, Mullikin JC, Xiao C, Sherry S, Koren S, Phillippy AM, Boutros PC, Sahraeian SME, Huang V, Rouette A, Alexander N, Mason CE, ... ... Schatz MC, et al. A robust benchmark for detection of germline large deletions and insertions. Nature Biotechnology. PMID 32541955 DOI: 10.1038/S41587-020-0538-8  1
2020 Nekrutenko A, Schatz MC. In memory of James Taylor: the birth of Galaxy. Genome Biology. 21: 105. PMID 32354350 DOI: 10.1186/S13059-020-02016-0  0.01
2020 Cloutier MM, Akinbami LJ, Salo PM, Schatz M, Simoneau T, Wilkerson JC, Diette G, Elward KS, Fuhlbrigge A, Mazurek JM, Feinstein L, Williams S, Zeldin DC. Use of National Asthma Guidelines by Allergists and Pulmonologists: A National Survey. The Journal of Allergy and Clinical Immunology. in Practice. PMID 32344187 DOI: 10.1016/J.Jaip.2020.04.026  0.01
2020 Darby CA, Gaddipati R, Schatz MC, Langmead B. Vargas: heuristic-free alignment for assessing linear and graph read aligners. Bioinformatics (Oxford, England). PMID 32321164 DOI: 10.1093/Bioinformatics/Btaa265  1
2020 Wang L, Lu Z, delaBastide M, Van Buren P, Wang X, Ghiban C, Regulski M, Drenkow J, Xu X, Ortiz-Ramirez C, Marco CF, Goodwin S, Dobin A, Birnbaum KD, Jackson DP, ... ... Schatz MC, et al. Management, Analyses, and Distribution of the MaizeCODE Data on the Cloud. Frontiers in Plant Science. 11: 289. PMID 32296450 DOI: 10.3389/Fpls.2020.00289  1
2020 Angel DM, Zeiger RS, Sicherer SH, Khan DA, Schatz M. JACI: In Practice Response to COVID-19 Pandemic. The Journal of Allergy and Clinical Immunology. in Practice. PMID 32272283 DOI: 10.1016/j.jaip.2020.03.027  0.01
2020 Lee LK, Ramakrishnan K, Safioti G, Ariely R, Schatz M. Asthma control is associated with economic outcomes, work productivity and health-related quality of life in patients with asthma. Bmj Open Respiratory Research. 7. PMID 32193226 DOI: 10.1136/bmjresp-2019-000534  0.01
2020 Ranallo-Benavidez TR, Jaron KS, Schatz MC. GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes. Nature Communications. 11: 1432. PMID 32188846 DOI: 10.1038/s41467-020-14998-3  0.01
2020 Leisman DE, Harhay MO, Lederer DJ, Abramson M, Adjei AA, Bakker J, Ballas ZK, Barreiro E, Bell SC, Bellomo R, Bernstein JA, Branson RD, Brusasco V, Chalmers JD, Chokroverty S, ... ... Schatz M, et al. Development and Reporting of Prediction Models: Guidance for Authors From Editors of Respiratory, Sleep, and Critical Care Journals. Critical Care Medicine. PMID 32141923 DOI: 10.1097/Ccm.0000000000004246  0.01
2020 Namazy J, Chambers C, Sahin L, Johnson T, Dinatale M, Lappin B, Schatz M. Clinicians' Perspective of The New Pregnancy and Lactation Labeling Final Rule (PLLR): Results from an AAAAI/FDA Survey. The Journal of Allergy and Clinical Immunology. in Practice. PMID 32084595 DOI: 10.1016/J.Jaip.2020.01.056  0.01
2020 Xu Z, Green B, Benoit N, Schatz M, Wheelan S, Cormack B. De novo genome assembly of Candida glabrata reveals cell wall protein complement and structure of dispersed tandem repeat arrays. Molecular Microbiology. PMID 32068314 DOI: 10.1111/Mmi.14488  0.01
2020 Zeiger RS, Schatz M, Butler RK, Weaver JP, Bali V, Chen W. Burden of Specialist-Diagnosed Chronic Cough in Adults. The Journal of Allergy and Clinical Immunology. in Practice. PMID 32059869 DOI: 10.1016/j.jaip.2020.01.054  0.01
2020 Litonjua AA, Carey VJ, Laranjo N, Stubbs BJ, Mirzakhani H, O'Connor GT, Sandel M, Beigelman A, Bacharier LB, Zeiger RS, Schatz M, Hollis BW, Weiss ST. Six-Year Follow-up of a Trial of Antenatal Vitamin D for Asthma Reduction. The New England Journal of Medicine. 382: 525-533. PMID 32023372 DOI: 10.1056/Nejmoa1906137  0.01
2020 Yland JJ, Bateman BT, Huybrechts KF, Brill G, Schatz MX, Wurst KE, Hernández-Díaz S. Perinatal Outcomes Associated with Maternal Asthma and its Severity and Control during Pregnancy. The Journal of Allergy and Clinical Immunology. in Practice. PMID 31981730 DOI: 10.1016/J.Jaip.2020.01.016  0.01
2020 Schatz M, Sicherer SH, Khan DA, Zeiger RS. The Journal of Allergy and Clinical Immunology: In Practice 2019 Highlights. The Journal of Allergy and Clinical Immunology. in Practice. PMID 31980411 DOI: 10.1016/j.jaip.2020.01.002  0.01
2019 Chen S, Krusche P, Dolzhenko E, Sherman RM, Petrovski R, Schlesinger F, Kirsche M, Bentley DR, Schatz MC, Sedlazeck FJ, Eberle MA. Paragraph: a graph-based structural variant genotyper for short-read sequence data. Genome Biology. 20: 291. PMID 31856913 DOI: 10.1186/s13059-019-1909-7  1
2019 Aganezov S, Zban I, Aksenov V, Alexeev N, Schatz MC. Recovering rearranged cancer chromosomes from karyotype graphs. Bmc Bioinformatics. 20: 641. PMID 31842730 DOI: 10.1186/s12859-019-3208-4  0.01
2019 Souza GM, Van Sluys MA, Lembke CG, Lee H, Margarido GRA, Hotta CT, Gaiarsa JW, Diniz AL, Oliveira MM, Ferreira SS, Nishiyama MY, Ten-Caten F, Ragagnin GT, Andrade PM, de Souza RF, ... ... Schatz MC, et al. Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop. Gigascience. 8. PMID 31782791 DOI: 10.1093/Gigascience/Giz129  1
2019 Nyenhuis SM, Akkoyun E, Liu L, Schatz M, Casale TB. "Real world assessment of asthma control and severity in children, adolescents, and adults with asthma: Relationships to care settings and co-morbidities". The Journal of Allergy and Clinical Immunology. in Practice. PMID 31707065 DOI: 10.1016/j.jaip.2019.10.032  0.01
2019 Alonge M, Soyk S, Ramakrishnan S, Wang X, Goodwin S, Sedlazeck FJ, Lippman ZB, Schatz MC. RaGOO: fast and accurate reference-guided scaffolding of draft genomes. Genome Biology. 20: 224. PMID 31661016 DOI: 10.1186/S13059-019-1829-6  1
2019 Chen LY, VanBuren R, Paris M, Zhou H, Zhang X, Wai CM, Yan H, Chen S, Alonge M, Ramakrishnan S, Liao Z, Liu J, Lin J, Yue J, Fatima M, ... ... Schatz MC, et al. The bracteatus pineapple genome and domestication of clonally propagated crops. Nature Genetics. PMID 31570895 DOI: 10.1038/S41588-019-0506-8  1
2019 Suri B, Pallantla RK, Schatz MF, Grigoriev RO. Heteroclinic and homoclinic connections in a Kolmogorov-like flow. Physical Review. E. 100: 013112. PMID 31499915 DOI: 10.1103/Physreve.100.013112  0.01
2019 Wenger AM, Peluso P, Rowell WJ, Chang PC, Hall RJ, Concepcion GT, Ebler J, Fungtammasan A, Kolesnikov A, Olson ND, Töpfer A, Alonge M, Mahmoud M, Qian Y, Chin CS, ... ... Schatz MC, et al. Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome. Nature Biotechnology. PMID 31406327 DOI: 10.1038/S41587-019-0217-9  1
2019 Soyk S, Lemmon ZH, Sedlazeck FJ, Jiménez-Gómez JM, Alonge M, Hutton SF, Van Eck J, Schatz MC, Lippman ZB. Author Correction: Duplication of a domestication locus neutralized a cryptic variant that caused a breeding barrier in tomato. Nature Plants. PMID 31292536 DOI: 10.1038/S41477-019-0488-7  1
2019 Darby CA, Fitch JR, Brennan PJ, Kelly BJ, Bir N, Magrini V, Leonard J, Cottrell CE, Gastier-Foster JM, Wilson RK, Mardis ER, White P, Langmead B, Schatz MC. Samovar: Single-Sample Mosaic Single-Nucleotide Variant Calling with Linked Reads. Iscience. 18: 1-10. PMID 31271967 DOI: 10.1016/J.Isci.2019.05.037  1
2019 Cohen JM, Bateman BT, Huybrechts KF, Mogun H, Yland J, Schatz M, Wurst KE, Hernandez-Diaz S. Poorly Controlled Asthma During Pregnancy Remains Common in the United States. The Journal of Allergy and Clinical Immunology. in Practice. PMID 31257187 DOI: 10.1016/J.Jaip.2019.05.043  0.01
2019 Gaiser MR, Lorenzen S, Merx K, Trojan J, Ocvirk J, Ettrich TJ, Al-Batran SE, Schulz H, Homann N, Feustel HP, Schatz M, Kripp M, Schulte N, Heeger S, Vlassak S, et al. Evaluation of EGFR inhibitor-mediated acneiform skin toxicity within the double-blind randomized EVITA trial: A thorough gender-specific analysis using the WoMo score. Cancer Medicine. PMID 31199595 DOI: 10.1002/cam4.2132  0.01
2019 Luo G, Stone BL, Koebnick C, He S, Au DH, Sheng X, Murtaugh MA, Sward KA, Schatz M, Zeiger RS, Davidson GH, Nkoy FL. Using Temporal Features to Provide Data-Driven Clinical Early Warnings for Chronic Obstructive Pulmonary Disease and Asthma Care Management: Protocol for a Secondary Analysis. Jmir Research Protocols. 8: e13783. PMID 31199308 DOI: 10.2196/13783  0.01
2019 Parsana P, Ruberman C, Jaffe AE, Schatz MC, Battle A, Leek JT. Addressing confounding artifacts in reconstruction of gene co-expression networks. Genome Biology. 20: 94. PMID 31097038 DOI: 10.1186/S13059-019-1700-9  0.08
2019 Tsai HJ, Nelliat AR, Choudhury MI, Kucharavy A, Bradford WD, Cook ME, Kim J, Mair DB, Sun SX, Schatz MC, Li R. Hypo-osmotic-like stress underlies general cellular defects of aneuploidy. Nature. PMID 31068692 DOI: 10.1038/S41586-019-1187-2  0.04
2019 Soyk S, Lemmon ZH, Sedlazeck FJ, Jiménez-Gómez JM, Alonge M, Hutton SF, Van Eck J, Schatz MC, Lippman ZB. Duplication of a domestication locus neutralized a cryptic variant that caused a breeding barrier in tomato. Nature Plants. 5: 471-479. PMID 31061537 DOI: 10.1038/S41477-019-0422-Z  1
2019 Zeiger RS, Schatz M, Yang SJ, Chen W. Fractional Exhaled Nitric Oxide-Assisted Management of Uncontrolled Persistent Asthma: A Real-World Prospective Observational Study. The Permanente Journal. 23. PMID 31050641 DOI: 10.7812/TPP/18-109  0.01
2019 Flores KF, Bandoli G, Chambers CD, Schatz M, Palmsten K. Asthma prevalence among women aged 18 to 44 in the United States: National health and nutrition examination survey 2001-2016. The Journal of Asthma : Official Journal of the Association For the Care of Asthma. 1-10. PMID 31014137 DOI: 10.1080/02770903.2019.1602874  0.01
2019 Alonge M, Schatz MC. A master regulator of regeneration. Science (New York, N.Y.). 363: 1152-1153. PMID 30872508 DOI: 10.1126/science.aaw6258  0.01
2019 Luo R, Sedlazeck FJ, Lam TW, Schatz MC. A multi-task convolutional deep neural network for variant calling in single molecule sequencing. Nature Communications. 10: 998. PMID 30824707 DOI: 10.1038/S41467-019-09025-Z  1
2019 Schatz MC, Cosgrove A. Graph genomes article collection. Genome Biology. 20: 25. PMID 30709357 DOI: 10.1186/s13059-019-1636-0  0.01
2019 Schatz M, Fiocchi A, Jensen-Jarolim E, Ballas ZK. Controversies in drug allergy: Consensus documents from the world experts. The Journal of Allergy and Clinical Immunology. 143: 82-83. PMID 30612666 DOI: 10.1016/j.jaci.2018.10.014  0.01
2019 Schatz M, Fiocchi A, Jensen-Jarolim E, Ballas ZK. Controversies in Drug Allergy: Consensus Documents From the World Experts. The Journal of Allergy and Clinical Immunology. in Practice. 7: 66-67. PMID 30573420 DOI: 10.1016/j.jaip.2018.10.012  0.01
2019 Mirzakhani H, Carey VJ, Zeiger R, Bacharier LB, O'Connor GT, Schatz MX, Laranjo N, Weiss ST, Litonjua AA. Impact of parental asthma, prenatal maternal asthma control, and vitamin D status on risk of asthma and recurrent wheeze in 3-year-old children. Clinical and Experimental Allergy : Journal of the British Society For Allergy and Clinical Immunology. 49: 419-429. PMID 30461089 DOI: 10.1111/Cea.13320  0.01
2018 Schatz M, Fiocchi A, Jensen-Jarolim E, Ballas ZK. Controversies in drug allergy: consensus documents from the world experts. The World Allergy Organization Journal. 11: 41. PMID 30598722 DOI: 10.1186/s40413-018-0223-2  0.01
2018 Wang Z, Ma K, Pitts S, Cheng Y, Liu X, Ke X, Kovaka S, Ashktorab H, Smoot DT, Schatz M, Wang Z, Meltzer S. Novel circular RNA NF1 acts as a molecular sponge, promoting gastric cancer by absorbing miR-16. Endocrine-Related Cancer. PMID 30576282 DOI: 10.1530/Erc-18-0478  1
2018 Schatz M, Sicherer SH, Khan D, Zeiger RS. The Journal of Allergy and Clinical Immunology: In Practice 2018 Highlights. The Journal of Allergy and Clinical Immunology. in Practice. PMID 30557718 DOI: 10.1016/j.jaip.2018.12.007  0.01
2018 Wirthlin M, Lima NCB, Guedes RLM, Soares AER, Almeida LGP, Cavaleiro NP, Loss de Morais G, Chaves AV, Howard JT, Teixeira MM, Schneider PN, Santos FR, Schatz MC, Felipe MS, Miyaki CY, et al. Parrot Genomes and the Evolution of Heightened Longevity and Cognition. Current Biology : Cb. PMID 30528582 DOI: 10.1016/J.Cub.2018.10.050  1
2018 Dennenmoser S, Sedlazeck FJ, Schatz MC, Altmüller J, Zytnicki M, Nolte AW. Genome-wide patterns of transposon proliferation in an evolutionary young hybrid fish. Molecular Ecology. PMID 30520198 DOI: 10.1111/mec.14969  1
2018 Zhang J, Zhang X, Tang H, Zhang Q, Hua X, Ma X, Zhu F, Jones T, Zhu X, Bowers J, Wai CM, Zheng C, Shi Y, Chen S, Xu X, ... ... Schatz MC, et al. Publisher Correction: Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. Nature Genetics. PMID 30425353 DOI: 10.1038/S41588-018-0293-7  1
2018 Tamma PD, Fan Y, Bergman Y, Pertea G, Kazmi A, Lewis S, Carroll KC, Schatz MC, Timp W, Simner PJ. Applying Rapid Whole Genome Sequencing to Predict Phenotypic Antimicrobial Susceptibility Testing Results Among Carbapenem-Resistant Clinical Isolates. Antimicrobial Agents and Chemotherapy. PMID 30373801 DOI: 10.1128/AAC.01923-18  1
2018 Desai SH, Crawford WW, Sheikh J, Li ZQ, Chen W, Gong A, Vogel R, Schatz M. The HEDIS Medication Management for People with Asthma (MMA) Measure Is Not Associated with Improved Asthma Outcomes. The Journal of Allergy and Clinical Immunology. in Practice. PMID 30368008 DOI: 10.1016/j.jaip.2018.10.015  0.01
2018 Lippner E, Sicherer SH, Land MH, Schatz M, Dinakar C. Needs Assessment Survey for a Food Allergy Control Tool. The Journal of Allergy and Clinical Immunology. in Practice. PMID 30317004 DOI: 10.1016/j.jaip.2018.09.035  0.01
2018 Zhang J, Zhang X, Tang H, Zhang Q, Hua X, Ma X, Zhu F, Jones T, Zhu X, Bowers J, Wai CM, Zheng C, Shi Y, Chen S, Xu X, ... ... Schatz MC, et al. Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. Nature Genetics. PMID 30297971 DOI: 10.1038/S41588-018-0237-2  1
2018 Suri B, Tithof J, Grigoriev RO, Schatz MF. Unstable equilibria and invariant manifolds in quasi-two-dimensional Kolmogorov-like flow. Physical Review. E. 98: 023105. PMID 30253486 DOI: 10.1103/Physreve.98.023105  0.01
2018 Lederer DJ, Bell SC, Branson RD, Chalmers JD, Marshall R, Maslove DM, Ost DE, Punjabi NM, Schatz M, Smyth AR, Stewart PW, Suissa S, Adjei AA, Akdis CA, Azoulay É, et al. Control of Confounding and Reporting of Results in Causal Inference Studies: Guidance for Authors from Editors of Respiratory, Sleep, and Critical Care Journals. Annals of the American Thoracic Society. PMID 30230362 DOI: 10.1513/Annalsats.201808-564Ps  0.01
2018 Kent CF, Dey A, Patel H, Tsvetkov N, Tiwari T, MacPhail VJ, Gobeil Y, Harpur BA, Gurtowski J, Schatz MC, Colla SR, Zayed A. Conservation Genomics of the Declining North American Bumblebee Reveals Inbreeding and Selection on Immune Genes. Frontiers in Genetics. 9: 316. PMID 30147708 DOI: 10.3389/Fgene.2018.00316  1
2018 Schatz M, Krishnan JA, Chambers C. Implications of Changes in FDA Prescribing Information Regarding the Safety and Use of Asthma Biologics during Pregnancy. Annals of the American Thoracic Society. PMID 30130420 DOI: 10.1513/Annalsats.201806-400Pp  0.01
2018 Arkin AP, Cottingham RW, Henry CS, Harris NL, Stevens RL, Maslov S, Dehal P, Ware D, Perez F, Canon S, Sneddon MW, Henderson ML, Riehl WJ, Murphy-Olson D, Chan SY, ... ... Schatz MC, et al. KBase: The United States Department of Energy Systems Biology Knowledgebase. Nature Biotechnology. 36: 566-569. PMID 29979655 DOI: 10.1038/Nbt.4163  1
2018 Nattestad M, Goodwin S, Ng K, Baslan T, Sedlazeck F, Rescheneder P, Garvin T, Fang H, Gurtowski J, Hutton E, Tseng E, Chin J, Beck T, Sundaravadanam Y, Kramer M, ... ... Schatz MC, et al. Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line. Genome Research. PMID 29954844 DOI: 10.1101/Gr.231100.117  1
2018 Chen W, Schatz M, Liang Z, Li Q, Sadikova E, Zhang Z, Bagga S, Zeiger RS. Controller therapy in Asians and whites with persistent Asthma. Asian Pacific Journal of Allergy and Immunology. PMID 29888928 DOI: 10.12932/AP-210617-0105  0.01
2018 Gómez-Romero L, Palacios-Flores K, Reyes J, García D, Boege M, Dávila G, Flores M, Schatz MC, Palacios R. Precise detection of de novo single nucleotide variants in human genomes. Proceedings of the National Academy of Sciences of the United States of America. PMID 29735690 DOI: 10.1073/Pnas.1802244115  0.01
2018 Sedlazeck FJ, Rescheneder P, Smolka M, Fang H, Nattestad M, von Haeseler A, Schatz MC. Accurate detection of complex structural variations using single-molecule sequencing. Nature Methods. PMID 29713083 DOI: 10.1038/S41592-018-0001-7  1
2018 Namazy JA, Schatz M, Dombrowski M. Clinical Updates in Women's Health Care Summary: Asthma. Obstetrics and Gynecology. 131: 954. PMID 29683908 DOI: 10.1097/AOG.0000000000002630  0.01
2018 Simner PJ, Antar AAR, Hao S, Gurtowski J, Tamma PD, Rock C, Opene BNA, Tekle T, Carroll KC, Schatz MC, Timp W. Antibiotic pressure on the acquisition and loss of antibiotic resistance genes in Klebsiella pneumoniae. The Journal of Antimicrobial Chemotherapy. PMID 29648629 DOI: 10.1093/jac/dky121  1
2018 Sedlazeck FJ, Lee H, Darby CA, Schatz MC. Piercing the dark matter: bioinformatics of long-range sequencing and mapping. Nature Reviews. Genetics. PMID 29599501 DOI: 10.1038/S41576-018-0003-4  1
2018 Palmsten K, Rolland M, Hebert MF, Clowse MEB, Schatz M, Xu R, Chambers CD. Patterns of prednisone use during pregnancy in women with rheumatoid arthritis: Daily and cumulative dose. Pharmacoepidemiology and Drug Safety. PMID 29488292 DOI: 10.1002/Pds.4410  0.01
2018 Stanford RH, Nag A, Mapel DW, Lee TA, Rosiello R, Schatz M, Vekeman F, Gauthier-Loiselle M, Merrigan JFP, Duh MS. Claims-based risk model for first severe COPD exacerbation. The American Journal of Managed Care. 24: e45-e53. PMID 29461849  0.01
2018 Namazy JA, Schatz M. Management of Asthma during Pregnancy: Optimizing Outcomes and Minimizing Risk. Seminars in Respiratory and Critical Care Medicine. 39: 29-35. PMID 29427983 DOI: 10.1055/s-0037-1606216  0.01
2018 Hulse-Kemp AM, Maheshwari S, Stoffel K, Hill TA, Jaffe D, Williams SR, Weisenfeld N, Ramakrishnan S, Kumar V, Shah P, Schatz MC, Church DM, Van Deynze A. Reference quality assembly of the 3.5-Gb genome of Capsicum annuum from a single linked-read library. Horticulture Research. 5: 4. PMID 29423234 DOI: 10.1038/S41438-017-0011-0  0.01
2018 Schatz M, Sicherer SH, Zeiger RS. The Journal of Allergy and Clinical Immunology: In Practice 2017 Year in Review. The Journal of Allergy and Clinical Immunology. in Practice. 6: 328-352. PMID 29397373 DOI: 10.1016/j.jaip.2017.12.016  0.01
2018 Fang H, Huang YF, Radhakrishnan A, Siepel A, Lyon GJ, Schatz MC. Scikit-ribo Enables Accurate Estimation and Robust Modeling of Translation Dynamics at Codon Resolution. Cell Systems. PMID 29361467 DOI: 10.1016/J.Cels.2017.12.007  1
2018 Mirzakhani H, Carey VJ, McElrath TF, Laranjo N, O'Connor G, Iverson RE, Lee-Parritz A, Strunk RC, Bacharier LB, Macones GA, Zeiger RS, Schatz M, Hollis BW, Litonjua AA, Weiss ST. The Association of Maternal Asthma and Early Pregnancy Vitamin D with Risk of Preeclampsia: An Observation From Vitamin D Antenatal Asthma Reduction Trial (VDAART). The Journal of Allergy and Clinical Immunology. in Practice. 6: 600-608.e2. PMID 28923490 DOI: 10.1016/J.Jaip.2017.07.018  0.01
2017 Luo R, Sedlazeck FJ, Darby CA, Kelly SM, Schatz MC. LRSim: A Linked-Reads Simulator Generating Insights for Better Genome Partitioning. Computational and Structural Biotechnology Journal. 15: 478-484. PMID 29213995 DOI: 10.1016/J.Csbj.2017.10.002  1
2017 Zeiger RS, Tran TN, Butler RK, Schatz M, Li Q, Khatry DB, Martin U, Kawatkar AA, Chen W. Relationship of Blood Eosinophil Count to Exacerbations in Chronic Obstructive Pulmonary Disease. The Journal of Allergy and Clinical Immunology. in Practice. PMID 29153881 DOI: 10.1016/j.jaip.2017.10.004  0.01
2017 Nyenhuis SM, Apter AJ, Schatz M, Krishnan JA. Comparative effectiveness trials in asthma - how will I recognize one? Current Opinion in Pulmonary Medicine. PMID 29076829 DOI: 10.1097/MCP.0000000000000442  0.01
2017 Afanasyev P, Seer-Linnemayr C, Ravelli RBG, Matadeen R, De Carlo S, Alewijnse B, Portugal RV, Pannu NS, Schatz M, van Heel M. Single-particle cryo-EM using alignment by classification (ABC): the structure of Lumbricus terrestris haemoglobin. Iucrj. 4: 678-694. PMID 28989723 DOI: 10.1107/S2052252517010922  0.01
2017 Roberts RJ, Carneiro MO, Schatz MC. Erratum to: The advantages of SMRT sequencing. Genome Biology. 18: 156. PMID 28814314 DOI: 10.1186/S13059-017-1295-Y  1
2017 Miller JR, Zhou P, Mudge J, Gurtowski J, Lee H, Ramaraj T, Walenz BP, Liu J, Stupar RM, Denny R, Song L, Singh N, Maron LG, McCouch SR, McCombie WR, ... Schatz MC, et al. Hybrid assembly with long and short reads improves discovery of gene family expansions. Bmc Genomics. 18: 541. PMID 28724409 DOI: 10.1186/S12864-017-3927-8  1
2017 Zeiger RS, Tran TN, Schatz M, Li Q, Chen W, Khatry DB, Davis J, Kawatkar AA. Drivers of health care costs for adults with persistent asthma. The Journal of Allergy and Clinical Immunology. in Practice. PMID 28709819 DOI: 10.1016/j.jaip.2017.05.026  0.01
2017 Luo R, Schatz MC, Salzberg SL. 16GT: a fast and sensitive variant caller using a 16-genotype probabilistic model. Gigascience. PMID 28637275 DOI: 10.1093/Gigascience/Gix045  1
2017 Brauer DL, Tse KY, Lin JC, Schatz MX, Simon RA. The Utility of the Reflux Symptom Index for Diagnosis of Laryngopharyngeal Reflux in an Allergy Patient Population. The Journal of Allergy and Clinical Immunology. in Practice. PMID 28606786 DOI: 10.1016/j.jaip.2017.04.039  0.01
2017 Mirzakhani H, O'Connor G, Bacharier LB, Zeiger RS, Schatz MX, Weiss ST, Litonjua AA. Asthma control status in pregnancy, body mass index, and maternal vitamin D levels. The Journal of Allergy and Clinical Immunology. 140: 1453-1456.e7. PMID 28606587 DOI: 10.1016/J.Jaci.2017.03.053  0.01
2017 Feigin ME, Garvin T, Bailey P, Waddell N, Chang DK, Kelley DR, Shuai S, Gallinger S, McPherson JD, Grimmond SM, Khurana E, Stein LD, Biankin AV, Schatz MC, Tuveson DA. Recurrent noncoding regulatory mutations in pancreatic ductal adenocarcinoma. Nature Genetics. PMID 28481342 DOI: 10.1038/Ng.3861  1
2017 Sullivan PW, Ghushchyan VH, Globe G, Schatz M. Oral Corticosteroid Exposure and Adverse Effects in Asthma. The Journal of Allergy and Clinical Immunology. PMID 28456623 DOI: 10.1016/j.jaci.2017.04.009  0.01
2017 Vurture GW, Sedlazeck FJ, Nattestad M, Underwood CJ, Fang H, Gurtowski J, Schatz MC. GenomeScope: Fast reference-free genome profiling from short reads. Bioinformatics (Oxford, England). PMID 28369201 DOI: 10.1093/Bioinformatics/Btx153  1
2017 Suri B, Tithof J, Grigoriev RO, Schatz MF. Forecasting Fluid Flows Using the Geometry of Turbulence. Physical Review Letters. 118: 114501. PMID 28368628 DOI: 10.1103/Physrevlett.118.114501  0.01
2017 Schatz MC. Nanopore sequencing meets epigenetics. Nature Methods. 14: 347-348. PMID 28362434 DOI: 10.1038/nmeth.4240  0.01
2017 Wolsk HM, Harshfield BJ, Laranjo N, Carey VJ, O'Connor G, Sandel M, Strunk RC, Bacharier LB, Zeiger RS, Schatz M, Hollis BW, Weiss ST, Litonjua AA. Vitamin D supplementation in pregnancy, prenatal 25(OH)D levels, race, and subsequent asthma or recurrent wheeze in offspring: Secondary analyses from the Vitamin D Antenatal Asthma Reduction Trial. The Journal of Allergy and Clinical Immunology. 140: 1423-1429.e5. PMID 28285844 DOI: 10.1016/J.Jaci.2017.01.013  0.01
2017 Zeiger RS, Schatz M, Li Q, Chen W, Khatry DB, Tran TN. Burden of Chronic Oral Corticosteroid Use by Adults with Persistent Asthma. The Journal of Allergy and Clinical Immunology. in Practice. PMID 28215604 DOI: 10.1016/j.jaip.2016.12.023  0.01
2017 Schatz M, Sicherer SH, Zeiger RS. The Journal of Allergy and Clinical Immunology: In Practice - 2016 Year in Review. The Journal of Allergy and Clinical Immunology. in Practice. 5: 218-236. PMID 28143692 DOI: 10.1016/j.jaip.2016.12.002  0.01
2017 Pal D, Pertot A, Shirole NH, Yao Z, Anaparthy N, Garvin T, Cox H, Chang K, Rollins F, Kendall J, Edwards L, Singh VA, Stone GC, Schatz MC, Hicks J, et al. TGF-β reduces DNA ds-break repair mechanisms to heighten genetic diversity and adaptability of CD44+/CD24- cancer cells. Elife. 6. PMID 28092266 DOI: 10.7554/Elife.21615  1
2017 Namazy JA, Schatz M. Pharmacological difficulties in the treatment of asthma in pregnant women. Expert Review of Clinical Pharmacology. 10: 285-292. PMID 27927045 DOI: 10.1080/17512433.2017.1268914  0.01
2016 Vij S, Kuhl H, Kuznetsova IS, Komissarov A, Yurchenko AA, Van Heusden P, Singh S, Thevasagayam NM, Prakki SR, Purushothaman K, Saju JM, Jiang J, Mbandi SK, Jonas M, Hin Yan Tong A, ... ... Schatz MC, et al. Correction: Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding. Plos Genetics. 12: e1006500. PMID 27935956 DOI: 10.1371/journal.pgen.1006500  1
2016 Fang H, Bergmann EA, Arora K, Vacic V, Zody MC, Iossifov I, O'Rawe JA, Wu Y, Jimenez Barron LT, Rosenbaum J, Ronemus M, Lee YH, Wang Z, Dikoglu E, Jobanputra V, ... ... Schatz MC, et al. Indel variant analysis of short-read sequencing data with Scalpel. Nature Protocols. 11: 2529-2548. PMID 27854363 DOI: 10.1038/Nprot.2016.150  1
2016 Lemmon ZH, Park SJ, Jiang K, Van Eck J, Schatz MC, Lippman ZB. The evolution of inflorescence diversity in the nightshades and heterochrony during meristem maturation. Genome Research. PMID 27821409 DOI: 10.1101/gr.207837.116  0.01
2016 Chin CS, Peluso P, Sedlazeck FJ, Nattestad M, Concepcion GT, Clum A, Dunn C, O'Malley R, Figueroa-Balderas R, Morales-Cruz A, Cramer GR, Delledonne M, Luo C, Ecker JR, Cantu D, ... ... Schatz MC, et al. Phased diploid genome assembly with single-molecule real-time sequencing. Nature Methods. PMID 27749838 DOI: 10.1038/Nmeth.4035  1
2016 Zeiger RS, Schatz M, Dalal AA, Chen W, Sadikova E, Suruki RY, Kawatkar AA, Qian L. Blood Eosinophil Count and Outcomes in Severe Uncontrolled Asthma: A Prospective Study. The Journal of Allergy and Clinical Immunology. in Practice. PMID 27665383 DOI: 10.1016/j.jaip.2016.07.015  0.01
2016 Schatz M, Zeiger RS, Sicherer SH. The Journal of Allergy Clinical Immunology: In Practice. Making An Impact. The Journal of Allergy and Clinical Immunology. in Practice. 4: 797-8. PMID 27587312 DOI: 10.1016/j.jaip.2016.06.026  0.01
2016 Camargo CA, Davis KJ, Andrews EB, Stempel DA, Schatz M. Pharmacoepidemiological Study of Long-Acting β-agonist/Inhaled Corticosteroid Therapy and Asthma Mortality: Clinical Implications. Clinical Drug Investigation. PMID 27581247 DOI: 10.1007/s40261-016-0448-1  1
2016 Namazy JA, Schatz M, Yang SJ, Chen W. Antibiotics for respiratory infections during pregnancy: prevalence and risk factors. The Journal of Allergy and Clinical Immunology. in Practice. PMID 27452887 DOI: 10.1016/j.jaip.2016.06.015  0.01
2016 Louik C, Kerr S, Van Bennekom CM, Chambers C, Jones KL, Schatz M, Mitchell AA. Safety of the 2011-12, 2012-13, and 2013-14 seasonal influenza vaccines in pregnancy: Preterm delivery and specific malformations, a study from the case-control arm of VAMPSS. Vaccine. PMID 27452865 DOI: 10.1016/J.Vaccine.2016.06.078  0.01
2016 Chambers CD, Johnson DL, Xu R, Luo YJ, Louik C, Mitchell AA, Schatz M, Jones KL. Safety of the 2010-11, 2011-12, 2012-13, and 2013-14 seasonal influenza vaccines in pregnancy: Birth defects, spontaneous abortion, preterm delivery, and small for gestational age infants, a study from the cohort arm of VAMPSS. Vaccine. PMID 27449682 DOI: 10.1016/J.Vaccine.2016.06.054  1
2016 Namazy JA, Schatz M. The safety of intranasal steroids during pregnancy: A good start. The Journal of Allergy and Clinical Immunology. 138: 105-6. PMID 27373328 DOI: 10.1016/j.jaci.2016.04.026  0.01
2016 Vembar SS, Seetin M, Lambert C, Nattestad M, Schatz MC, Baybayan P, Scherf A, Smith ML. Complete telomere-to-telomere de novo assembly of the Plasmodium falciparum genome through long-read (>11 kb), single molecule, real-time sequencing. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 27345719 DOI: 10.1093/dnares/dsw022  1
2016 Gater A, Nelsen L, Fleming S, Lundy JJ, Bonner N, Hall R, Marshall C, Staunton H, Krishnan JA, Stoloff S, Schatz M, Haughney J. Assessing Asthma Symptoms in Adolescents and Adults: Qualitative Research Supporting Development of the Asthma Daily Symptom Diary. Value in Health : the Journal of the International Society For Pharmacoeconomics and Outcomes Research. 19: 440-50. PMID 27325336 DOI: 10.1016/j.jval.2016.01.007  0.01
2016 Nattestad M, Schatz MC. Assemblytics: a web analytics tool for the detection of variants from an assembly. Bioinformatics (Oxford, England). 32: 3021-3. PMID 27318204 DOI: 10.1093/bioinformatics/btw369  1
2016 Bombarely A, Moser M, Amrad A, Bao M, Bapaume L, Barry CS, Bliek M, Boersma MR, Borghi L, Bruggmann R, Bucher M, D'Agostino N, Davies K, Druege U, Dudareva N, ... ... Schatz MC, et al. Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida. Nature Plants. 2: 16074. PMID 27255838 DOI: 10.1038/Nplants.2016.74  1
2016 Vij S, Kuhl H, Kuznetsova IS, Komissarov A, Yurchenko AA, Van Heusden P, Singh S, Thevasagayam NM, Prakki SR, Purushothaman K, Saju JM, Jiang J, Mbandi SK, Jonas M, Hin Yan Tong A, ... ... Schatz MC, et al. Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding. Plos Genetics. 12: e1005954. PMID 27082250 DOI: 10.1371/Journal.Pgen.1005954  1
2016 Stanford RH, Nag A, Mapel DW, Lee TA, Rosiello R, Vekeman F, Gauthier-Loiselle M, Duh MS, Merrigan JF, Schatz M. Validation of a New Risk Measure for Chronic Obstructive Pulmonary Disease Exacerbation Using Health Insurance Claims Data. Annals of the American Thoracic Society. PMID 27070274 DOI: 10.1513/AnnalsATS.201508-493OC  0.01
2016 Rosenfeld JA, Reeves D, Brugler MR, Narechania A, Simon S, Durrett R, Foox J, Shianna K, Schatz MC, Gandara J, Afshinnekoo E, Lam ET, Hastie AR, Chan S, Cao H, et al. Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius. Nature Communications. 7: 10164. PMID 26836631 DOI: 10.1038/Ncomms10164  1
2016 Litonjua AA, Carey VJ, Laranjo N, Harshfield BJ, McElrath TF, O'Connor GT, Sandel M, Iverson RE, Lee-Paritz A, Strunk RC, Bacharier LB, Macones GA, Zeiger RS, Schatz M, Hollis BW, et al. Effect of Prenatal Supplementation With Vitamin D on Asthma or Recurrent Wheezing in Offspring by Age 3 Years: The VDAART Randomized Clinical Trial. Jama. 315: 362-70. PMID 26813209 DOI: 10.1001/Jama.2015.18589  1
2016 Palmsten K, Schatz M, Chan PH, Johnson DL, Chambers CD. Validation of the Pregnancy Asthma Control Test. The Journal of Allergy and Clinical Immunology. in Practice. PMID 26776373 DOI: 10.1016/j.jaip.2015.11.019  1
2015 Bender BG, Krishnan JA, Chambers DA, Cloutier MM, Riekert KA, Rand CS, Schatz M, Thomson CC, Wilson SR, Apter A, Carson SS, George M, Gerald JK, Gerald L, Goss CH, et al. American Thoracic Society and National Heart, Lung, and Blood Institute Implementation Research Workshop Report. Annals of the American Thoracic Society. 12: S213-S221. PMID 26653201 DOI: 10.1513/AnnalsATS.201506-367OT  1
2015 Zeiger RS, Schatz M, Li Q, Chen W, Khatry DB, Tran TN. Characteristics and Outcomes of HEDIS-Defined Asthma Patients with COPD Diagnostic Coding. The Journal of Allergy and Clinical Immunology. in Practice. PMID 26619923 DOI: 10.1016/j.jaip.2015.10.002  1
2015 Globe G, Wiklund I, Lin J, Chen WH, Martin M, Mattera MS, von Maltzahn R, Feng JY, Chon Y, Viswanathan HN, Schatz M. Psychometric Properties of the Asthma Symptom Diary (ASD), a Diary for Use in Clinical Trials of Persistent Asthma. The Journal of Allergy and Clinical Immunology. in Practice. PMID 26549745 DOI: 10.1016/j.jaip.2015.07.008  1
2015 Ming R, VanBuren R, Wai CM, Tang H, Schatz MC, Bowers JE, Lyons E, Wang ML, Chen J, Biggers E, Zhang J, Huang L, Zhang L, Miao W, Zhang J, et al. The pineapple genome and the evolution of CAM photosynthesis. Nature Genetics. 47: 1435-42. PMID 26523774 DOI: 10.1038/Ng.3435  1
2015 Rank MA, Liesinger JT, Branda ME, Gionfriddo MR, Schatz M, Zeiger RS, Shah ND. Comparative safety and costs of stepping down asthma medications in patients with controlled asthma. The Journal of Allergy and Clinical Immunology. PMID 26506020 DOI: 10.1016/j.jaci.2015.08.035  1
2015 Smolka M, Rescheneder P, Schatz MC, von Haeseler A, Sedlazeck FJ. Teaser: Individualized benchmarking and optimization of read mapping results for NGS data. Genome Biology. 16: 235. PMID 26494581 DOI: 10.1186/s13059-015-0803-1  1
2015 Goodwin S, Gurtowski J, Ethe-Sayers S, Deshpande P, Schatz MC, McCombie WR. Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome. Genome Research. 25: 1750-6. PMID 26447147 DOI: 10.1101/Gr.191395.115  1
2015 Zeiger RS, Schatz M, Dalal AA, Qian L, Chen W, Ngor EW, Suruki RY, Kawatkar AA. Utilization and Costs of Severe Uncontrolled Asthma in a Managed-Care Setting. The Journal of Allergy and Clinical Immunology. in Practice. PMID 26439182 DOI: 10.1016/j.jaip.2015.08.003  1
2015 Schatz MC. Biological data sciences in genome research. Genome Research. 25: 1417-22. PMID 26430150 DOI: 10.1101/gr.191684.115  0.01
2015 Wences AH, Schatz MC. Metassembler: merging and optimizing de novo genome assemblies. Genome Biology. 16: 207. PMID 26403281 DOI: 10.1186/s13059-015-0764-4  0.01
2015 Wasik K, Gurtowski J, Zhou X, Ramos OM, Delás MJ, Battistoni G, El Demerdash O, Falciatori I, Vizoso DB, Smith AD, Ladurner P, Schärer L, McCombie WR, Hannon GJ, Schatz M. Genome and transcriptome of the regeneration-competent flatworm, Macrostomum lignano. Proceedings of the National Academy of Sciences of the United States of America. 112: 12462-7. PMID 26392545 DOI: 10.1073/Pnas.1516718112  1
2015 Garvin T, Aboukhalil R, Kendall J, Baslan T, Atwal GS, Hicks J, Wigler M, Schatz MC. Interactive analysis and assessment of single-cell copy-number variations. Nature Methods. 12: 1058-60. PMID 26344043 DOI: 10.1038/Nmeth.3578  1
2015 Christiansen SC, Schatz M, Yang SJ, Ngor E, Chen W, Zuraw BL. Hypertension and Asthma: A Comorbid Relationship. The Journal of Allergy and Clinical Immunology. in Practice. PMID 26342745 DOI: 10.1016/j.jaip.2015.07.009  1
2015 Zhou X, Battistoni G, El Demerdash O, Gurtowski J, Wunderer J, Falciatori I, Ladurner P, Schatz MC, Hannon GJ, Wasik KA. Dual functions of Macpiwi1 in transposon silencing and stem cell maintenance in the flatworm Macrostomum lignano. Rna (New York, N.Y.). PMID 26323280 DOI: 10.1261/Rna.052456.115  1
2015 Zeiger RS, Schatz M, Chen W, Li Q, Khatry DB, Tran TN. Adherent uncontrolled adult persistent asthma: Characteristics and asthma outcomes. The Journal of Allergy and Clinical Immunology. in Practice. 3: 986-990.e2. PMID 26282160 DOI: 10.1016/j.jaip.2015.06.016  1
2015 Namazy JA, Schatz M. Pharmacotherapy options to treat asthma during pregnancy. Expert Opinion On Pharmacotherapy. 16: 1783-91. PMID 26194212 DOI: 10.1517/14656566.2015.1066332  0.01
2015 Stephens ZD, Lee SY, Faghri F, Campbell RH, Zhai C, Efron MJ, Iyer R, Schatz MC, Sinha S, Robinson GE. Big Data: Astronomical or Genomical? Plos Biology. 13: e1002195. PMID 26151137 DOI: 10.1371/Journal.Pbio.1002195  1
2015 Zazzali JL, Raimundo KP, Trzaskoma B, Rosén KE, Schatz M. Changes in asthma control, work productivity, and impairment with omalizumab: 5-year EXCELS study results. Allergy and Asthma Proceedings : the Official Journal of Regional and State Allergy Societies. 36: 283-92. PMID 26108086 DOI: 10.2500/aap.2015.36.3849  1
2015 Sullivan PW, Campbell JD, Globe G, Ghushchyan VH, Bender B, Schatz M, Chon Y, Woolley JM, Magid DJ. Measuring the effect of asthma control on exacerbations and health resource use. The Journal of Allergy and Clinical Immunology. PMID 26073753 DOI: 10.1016/j.jaci.2015.04.046  1
2015 Afanasyev P, Ravelli RB, Matadeen R, De Carlo S, van Duinen G, Alewijnse B, Peters PJ, Abrahams JP, Portugal RV, Schatz M, van Heel M. A posteriori correction of camera characteristics from large image data sets. Scientific Reports. 5: 10317. PMID 26068909 DOI: 10.1038/srep10317  1
2015 Mitchell AA, Louik C, Chambers C, Jones KL, Schatz M. Immunization surveillance systems for pregnant women. Pharmacoepidemiology and Drug Safety. 24: 669. PMID 26053022 DOI: 10.1002/Pds.3784  1
2015 MacColl E, Therkelsen MD, Sherpa T, Ellerbrock H, Johnston LA, Jariwala RH, Chang W, Gurtowski J, Schatz MC, Mozammal Hossain M, Cassidy-Hanley DM, Clark TG, Chang WJ. Molecular genetic diversity and characterization of conjugation genes in the fish parasite Ichthyophthirius multifiliis. Molecular Phylogenetics and Evolution. 86: 1-7. PMID 25743182 DOI: 10.1016/j.ympev.2015.02.017  1
2015 Narzisi G, Schatz MC. The challenge of small-scale repeats for indel discovery. Frontiers in Bioengineering and Biotechnology. 3: 8. PMID 25674564 DOI: 10.3389/Fbioe.2015.00008  1
2015 Church DM, Schneider VA, Steinberg KM, Schatz MC, Quinlan AR, Chin CS, Kitts PA, Aken B, Marth GT, Hoffman MM, Herrero J, Mendoza ML, Durbin R, Flicek P. Extending reference assembly models. Genome Biology. 16: 13. PMID 25651527 DOI: 10.1186/S13059-015-0587-3  1
2014 Schatz MC, Maron LG, Stein JC, Hernandez Wences A, Gurtowski J, Biggers E, Lee H, Kramer M, Antoniou E, Ghiban E, Wright MH, Chia JM, Ware D, McCouch SR, McCombie WR. Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica. Genome Biology. 15: 506. PMID 25468217 DOI: 10.1186/S13059-014-0506-Z  1
2014 Fang H, Wu Y, Narzisi G, O'Rawe JA, Barrón LT, Rosenbaum J, Ronemus M, Iossifov I, Schatz MC, Lyon GJ. Reducing INDEL calling errors in whole genome and exome sequencing data. Genome Medicine. 6: 89. PMID 25426171 DOI: 10.1186/S13073-014-0089-Z  1
2014 Marcus S, Lee H, Schatz MC. SplitMEM: a graphical algorithm for pan-genome analysis with suffix skips. Bioinformatics (Oxford, England). 30: 3476-83. PMID 25398610 DOI: 10.1093/Bioinformatics/Btu756  1
2014 Iossifov I, O'Roak BJ, Sanders SJ, Ronemus M, Krumm N, Levy D, Stessman HA, Witherspoon KT, Vives L, Patterson KE, Smith JD, Paeper B, Nickerson DA, Dea J, Dong S, ... ... Schatz MC, et al. The contribution of de novo coding mutations to autism spectrum disorder. Nature. 515: 216-21. PMID 25363768 DOI: 10.1038/Nature13908  1
2014 Narzisi G, O'Rawe JA, Iossifov I, Fang H, Lee YH, Wang Z, Wu Y, Lyon GJ, Wigler M, Schatz MC. Accurate de novo and transmitted indel detection in exome-capture data using microassembly. Nature Methods. 11: 1033-6. PMID 25128977 DOI: 10.1038/Nmeth.3069  1
2014 Ganapathy G, Howard JT, Ward JM, Li J, Li B, Li Y, Xiong Y, Zhang Y, Zhou S, Schwartz DC, Schatz M, Aboukhalil R, Fedrigo O, Bukovnik L, Wang T, et al. High-coverage sequencing and annotated assemblies of the budgerigar genome. Gigascience. 3: 11. PMID 25061512 DOI: 10.1186/2047-217X-3-11  1
2014 Blood PD, Marcus S, Schatz MC. Large-scale sequencing and assembly of cereal genomes using blacklight Acm International Conference Proceeding Series. DOI: 10.1145/2616498.2616502  1
2013 Schatz MC, Langmead B. The DNA Data Deluge: Fast, efficient genome sequencing machines are spewing out more data than geneticists can analyze. Ieee Spectrum. 50: 26-33. PMID 24920863 DOI: 10.1109/Mspec.2013.6545119  1
2013 Saw JH, Schatz M, Brown MV, Kunkel DD, Foster JS, Shick H, Christensen S, Hou S, Wan X, Donachie SP. Cultivation and complete genome sequencing of Gloeobacter kilaueensis sp. nov., from a lava cave in KÄ«lauea Caldera, Hawai'i. Plos One. 8: e76376. PMID 24194836 DOI: 10.1371/Journal.Pone.0076376  1
2013 Bradnam KR, Fass JN, Alexandrov A, Baranay P, Bechner M, Birol I, Boisvert S, Chapman JA, Chapuis G, Chikhi R, Chitsaz H, Chou WC, Corbeil J, Del Fabbro C, Docking TR, ... ... Schatz MC, et al. Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. Gigascience. 2: 10. PMID 23870653 DOI: 10.1186/2047-217X-2-10  1
2013 Roberts RJ, Carneiro MO, Schatz MC. The advantages of SMRT sequencing. Genome Biology. 14: 405. PMID 23822731 DOI: 10.1186/gb-2013-14-6-405  1
2013 Ming R, VanBuren R, Liu Y, Yang M, Han Y, Li LT, Zhang Q, Kim MJ, Schatz MC, Campbell M, Li J, Bowers JE, Tang H, Lyons E, Ferguson AA, et al. Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.). Genome Biology. 14: R41. PMID 23663246 DOI: 10.1186/Gb-2013-14-5-R41  1
2013 Doolittle WF, Fraser P, Gerstein MB, Graveley BR, Henikoff S, Huttenhower C, Oshlack A, Ponting CP, Rinn JL, Schatz MC, Ule J, Weigel D, Weinstock GM. Sixty years of genome biology. Genome Biology. 14: 113. PMID 23651518 DOI: 10.1186/Gb-2013-14-4-113  1
2013 Maron LG, Guimarães CT, Kirst M, Albert PS, Birchler JA, Bradbury PJ, Buckler ES, Coluccio AE, Danilova TV, Kudrna D, Magalhaes JV, Piñeros MA, Schatz MC, Wing RA, Kochian LV. Aluminum tolerance in maize is associated with higher MATE1 gene copy number. Proceedings of the National Academy of Sciences of the United States of America. 110: 5241-6. PMID 23479633 DOI: 10.1073/Pnas.1220766110  1
2013 Schatz MC, Phillippy AM, Sommer DD, Delcher AL, Puiu D, Narzisi G, Salzberg SL, Pop M. Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies. Briefings in Bioinformatics. 14: 213-24. PMID 22199379 DOI: 10.1093/Bib/Bbr074  1
2013 Roberts RJ, Carneiro MO, Schatz MC. The advantages of SMRT sequencing Genome Biology. 405. DOI: 10.1186/Gb-2013-14-7-405  1
2012 Schatz MC, Phillippy AM. The rise of a digital immune system. Gigascience. 1: 4. PMID 23587178 DOI: 10.1186/2047-217X-1-4  1
2012 Gurtowski J, Schatz MC, Langmead B. Genotyping in the cloud with Crossbow. Current Protocols in Bioinformatics. Unit15.3. PMID 22948728 DOI: 10.1002/0471250953.Bi1503S39  1
2012 Koren S, Schatz MC, Walenz BP, Martin J, Howard JT, Ganapathy G, Wang Z, Rasko DA, McCombie WR, Jarvis ED, Adam M Phillippy. Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nature Biotechnology. 30: 693-700. PMID 22750884 DOI: 10.1038/Nbt.2280  1
2012 Iossifov I, Ronemus M, Levy D, Wang Z, Hakker I, Rosenbaum J, Yamrom B, Lee YH, Narzisi G, Leotta A, Kendall J, Grabowska E, Ma B, Marks S, Rodgers L, ... ... Schatz MC, et al. De novo gene disruptions in children on the autistic spectrum. Neuron. 74: 285-99. PMID 22542183 DOI: 10.1016/J.Neuron.2012.04.009  1
2012 Salzberg SL, Phillippy AM, Zimin A, Puiu D, Magoc T, Koren S, Treangen TJ, Schatz MC, Delcher AL, Roberts M, Marçais G, Pop M, Yorke JA. GAGE: A critical evaluation of genome assemblies and assembly algorithms. Genome Research. 22: 557-67. PMID 22147368 DOI: 10.1101/Gr.131383.111  1
2011 Donia MS, Fricke WF, Partensky F, Cox J, Elshahawi SI, White JR, Phillippy AM, Schatz MC, Piel J, Haygood MG, Ravel J, Schmidt EW. Complex microbiome underlying secondary and primary metabolism in the tunicate-Prochloron symbiosis. Proceedings of the National Academy of Sciences of the United States of America. 108: E1423-32. PMID 22123943 DOI: 10.1073/Pnas.1111712108  1
2011 Earl D, Bradnam K, St John J, Darling A, Lin D, Fass J, Yu HO, Buffalo V, Zerbino DR, Diekhans M, Nguyen N, Ariyaratne PN, Sung WK, Ning Z, Haimel M, ... ... Schatz MC, et al. Assemblathon 1: a competitive assessment of de novo short read assembly methods. Genome Research. 21: 2224-41. PMID 21926179 DOI: 10.1101/Gr.126599.111  1
2011 Bogdanove AJ, Koebnik R, Lu H, Furutani A, Angiuoli SV, Patil PB, Van Sluys MA, Ryan RP, Meyer DF, Han SW, Aparna G, Rajaram M, Delcher AL, Phillippy AM, Puiu D, ... Schatz MC, et al. Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp. Journal of Bacteriology. 193: 5450-64. PMID 21784931 DOI: 10.1128/Jb.05262-11  1
2010 Kelley DR, Schatz MC, Salzberg SL. Quake: quality-aware detection and correction of sequencing errors. Genome Biology. 11: R116. PMID 21114842 DOI: 10.1186/gb-2010-11-11-r116  1
2010 Cornman SR, Schatz MC, Johnston SJ, Chen YP, Pettis J, Hunt G, Bourgeois L, Elsik C, Anderson D, Grozinger CM, Evans JD. Genomic survey of the ectoparasitic mite Varroa destructor, a major pest of the honey bee Apis mellifera. Bmc Genomics. 11: 602. PMID 20973996 DOI: 10.1186/1471-2164-11-602  1
2010 Dalloul RA, Long JA, Zimin AV, Aslam L, Beal K, Blomberg Le Ann, Bouffard P, Burt DW, Crasta O, Crooijmans RP, Cooper K, Coulombe RA, De S, Delany ME, Dodgson JB, ... ... Schatz MC, et al. Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis. Plos Biology. 8. PMID 20838655 DOI: 10.1371/Journal.Pbio.1000475  1
2010 Schatz MC, Langmead B, Salzberg SL. Cloud computing and the DNA data race Nature Biotechnology. 28: 691-693. PMID 20622843 DOI: 10.1038/Nbt0710-691  1
2010 Schatz MC, Phillippy AM, Gajer P, DeSantis TZ, Andersen GL, Ravel J. Integrated microbial survey analysis of prokaryotic communities for the PhyloChip microarray. Applied and Environmental Microbiology. 76: 5636-8. PMID 20581189 DOI: 10.1128/Aem.00303-10  1
2010 Schatz MC, Delcher AL, Salzberg SL. Assembly of large genomes using second-generation sequencing Genome Research. 20: 1165-1173. PMID 20508146 DOI: 10.1101/gr.101360.109  1
2010 Kingsford C, Schatz MC, Pop M. Assembly complexity of prokaryotic genomes using short reads. Bmc Bioinformatics. 11: 21. PMID 20064276 DOI: 10.1186/1471-2105-11-21  1
2010 Kelley D, Schatz M, Salzberg S. Quality-aware error correction of sequencing reads F1000research. 1. DOI: 10.7490/F1000Research.274.1  0.96
2009 Trapnell C, Schatz MC. Optimizing Data Intensive GPGPU Computations for DNA Sequence Alignment. Parallel Computing. 35: 429-440. PMID 20161021 DOI: 10.1016/j.parco.2009.05.002  1
2009 Langmead B, Schatz MC, Lin J, Pop M, Salzberg SL. Searching for SNPs with cloud computing. Genome Biology. 10: R134. PMID 19930550 DOI: 10.1186/Gb-2009-10-11-R134  1
2009 Cornman RS, Chen YP, Schatz MC, Street C, Zhao Y, Desany B, Egholm M, Hutchison S, Pettis JS, Lipkin WI, Evans JD. Genomic analyses of the microsporidian Nosema ceranae, an emergent pathogen of honey bees. Plos Pathogens. 5: e1000466. PMID 19503607 DOI: 10.1371/journal.ppat.1000466  1
2009 Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marçais G, Roberts M, Subramanian P, Yorke JA, Salzberg SL. A whole-genome assembly of the domestic cow, Bos taurus. Genome Biology. 10: R42. PMID 19393038 DOI: 10.1186/Gb-2009-10-4-R42  1
2009 Navlakha S, Schatz MC, Kingsford C. Revealing biological modules via graph summarization. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 253-64. PMID 19183002 DOI: 10.1089/Cmb.2008.11Tt  1
2008 Desjardins CA, Gundersen-Rindal DE, Hostetler JB, Tallon LJ, Fadrosh DW, Fuester RW, Pedroni MJ, Haas BJ, Schatz MC, Jones KM, Crabtree J, Forberger H, Nene V. Comparative genomics of mutualistic viruses of Glyptapanteles parasitic wasps. Genome Biology. 9: R183. PMID 19116010 DOI: 10.1186/gb-2008-9-12-r183  1
2008 Salzberg SL, Sommer DD, Schatz MC, Phillippy AM, Rabinowicz PD, Tsuge S, Furutani A, Ochiai H, Delcher AL, Kelley D, Madupu R, Puiu D, Radune D, Shumway M, Trapnell C, et al. Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A. Bmc Genomics. 9: 204. PMID 18452608 DOI: 10.1186/1471-2164-9-204  1
2008 Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KL, Salzberg SL, Feng L, Jones MR, Skelton RL, Murray JE, ... ... Schatz M, et al. The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature. 452: 991-6. PMID 18432245 DOI: 10.1038/Nature06856  1
2008 Phillippy AM, Schatz MC, Pop M. Genome assembly forensics: finding the elusive mis-assembly. Genome Biology. 9: R55. PMID 18341692 DOI: 10.1186/Gb-2008-9-3-R55  1
2007 Schatz MC, Trapnell C, Delcher AL, Varshney A. High-throughput sequence alignment using Graphics Processing Units. Bmc Bioinformatics. 8: 474. PMID 18070356 DOI: 10.1186/1471-2105-8-474  1
2007 Ghedin E, Wang S, Spiro D, Caler E, Zhao Q, Crabtree J, Allen JE, Delcher AL, Guiliano DB, Miranda-Saavedra D, Angiuoli SV, Creasy T, Amedeo P, Haas B, El-Sayed NM, ... ... Schatz M, et al. Draft genome of the filarial nematode parasite Brugia malayi. Science (New York, N.Y.). 317: 1756-60. PMID 17885136 DOI: 10.1126/Science.1145406  1
2007 Desjardins CA, Gundersen-Rindal DE, Hostetler JB, Tallon LJ, Fuester RW, Schatz MC, Pedroni MJ, Fadrosh DW, Haas BJ, Toms BS, Chen D, Nene V. Structure and evolution of a proviral locus of Glyptapanteles indiensis bracovirus. Bmc Microbiology. 7: 61. PMID 17594494 DOI: 10.1186/1471-2180-7-61  1
2007 Nene V, Wortman JR, Lawson D, Haas B, Kodira C, Tu ZJ, Loftus B, Xi Z, Megy K, Grabherr M, Ren Q, Zdobnov EM, Lobo NF, Campbell KS, Brown SE, ... ... Schatz M, et al. Genome sequence of Aedes aegypti, a major arbovirus vector. Science (New York, N.Y.). 316: 1718-23. PMID 17510324 DOI: 10.1126/Science.1138878  1
2007 Schatz MC, Phillippy AM, Shneiderman B, Salzberg SL. Hawkeye: an interactive visual analytics tool for genome assemblies. Genome Biology. 8: R34. PMID 17349036 DOI: 10.1186/Gb-2007-8-3-R34  1
2007 Carlton JM, Hirt RP, Silva JC, Delcher AL, Schatz M, Zhao Q, Wortman JR, Bidwell SL, Alsmark UC, Besteiro S, Sicheritz-Ponten T, Noel CJ, Dacks JB, Foster PG, Simillion C, et al. Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis. Science (New York, N.Y.). 315: 207-12. PMID 17218520 DOI: 10.1126/Science.1132894  1
2005 Fouts DE, Mongodin EF, Mandrell RE, Miller WG, Rasko DA, Ravel J, Brinkac LM, DeBoy RT, Parker CT, Daugherty SC, Dodson RJ, Durkin AS, Madupu R, Sullivan SA, Shetty JU, ... ... Schatz MC, et al. Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species. Plos Biology. 3: e15. PMID 15660156 DOI: 10.1371/Journal.Pbio.0030015  1
2004 Gajer P, Schatz M, Salzberg SL. Automated correction of genome sequence errors. Nucleic Acids Research. 32: 562-9. PMID 14744981 DOI: 10.1093/Nar/Gkh216  1
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