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Boojala V. B. Reddy - Publications

Affiliations: 
Biochemistry City University of New York, New York, NY, United States 
 Rockefeller University, New York, NY, United States 
Area:
Biochemistry, Bioinformatics Biology
Website:
https://www.researchgate.net/profile/Boojala_Reddy
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29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Chu J, Vila-Farres X, Inoyama D, Ternei M, Cohen LJ, Gordon EA, Reddy BV, Charlop-Powers Z, Zebroski HA, Gallardo-Macias R, Jaskowski M, Satish S, Park S, Perlin DS, Freundlich JS, et al. Discovery of MRSA active antibiotics using primary sequence from the human microbiome. Nature Chemical Biology. PMID 27748750 DOI: 10.1038/Nchembio.2207  0.315
2015 Cohen LJ, Kang HS, Chu J, Huang YH, Gordon EA, Reddy BV, Ternei MA, Craig JW, Brady SF. Functional metagenomic discovery of bacterial effectors in the human microbiome and isolation of commendamide, a GPCR G2A/132 agonist. Proceedings of the National Academy of Sciences of the United States of America. 112: E4825-34. PMID 26283367 DOI: 10.1073/Pnas.1508737112  0.361
2015 Owen JG, Charlop-Powers Z, Smith AG, Ternei MA, Calle PY, Reddy BV, Montiel D, Brady SF. Multiplexed metagenome mining using short DNA sequence tags facilitates targeted discovery of epoxyketone proteasome inhibitors. Proceedings of the National Academy of Sciences of the United States of America. 112: 4221-6. PMID 25831524 DOI: 10.1073/Pnas.1501124112  0.351
2015 Charlop-Powers Z, Owen JG, Reddy BV, Ternei MA, Guimarães DO, de Frias UA, Pupo MT, Seepe P, Feng Z, Brady SF. Global biogeographic sampling of bacterial secondary metabolism. Elife. 4: e05048. PMID 25599565 DOI: 10.7554/Elife.05048  0.335
2014 Reddy BV, Milshteyn A, Charlop-Powers Z, Brady SF. eSNaPD: a versatile, web-based bioinformatics platform for surveying and mining natural product biosynthetic diversity from metagenomes. Chemistry & Biology. 21: 1023-33. PMID 25065533 DOI: 10.1016/J.Chembiol.2014.06.007  0.308
2013 Owen JG, Reddy BV, Ternei MA, Charlop-Powers Z, Calle PY, Kim JH, Brady SF. Mapping gene clusters within arrayed metagenomic libraries to expand the structural diversity of biomedically relevant natural products. Proceedings of the National Academy of Sciences of the United States of America. 110: 11797-802. PMID 23824289 DOI: 10.1073/Pnas.1222159110  0.319
2012 Reddy BV, Kallifidas D, Kim JH, Charlop-Powers Z, Feng Z, Brady SF. Natural product biosynthetic gene diversity in geographically distinct soil microbiomes. Applied and Environmental Microbiology. 78: 3744-52. PMID 22427492 DOI: 10.1128/Aem.00102-12  0.339
2010 Pecic S, Makkar P, Chaudhary S, Reddy BV, Navarro HA, Harding WW. Affinity of aporphines for the human 5-HT2A receptor: insights from homology modeling and molecular docking studies. Bioorganic & Medicinal Chemistry. 18: 5562-75. PMID 20621490 DOI: 10.1016/J.Bmc.2010.06.043  0.621
2010 Ahmed S, Metpally RP, Sangadala S, Reddy BV. Virtual screening and selection of drug-like compounds to block noggin interaction with bone morphogenetic proteins. Journal of Molecular Graphics & Modelling. 28: 670-82. PMID 20137990 DOI: 10.1016/J.Jmgm.2010.01.006  0.58
2009 Okada M, Sangadala S, Liu Y, Yoshida M, Reddy BV, Titus L, Boden SD. Development and optimization of a cell-based assay for the selection of synthetic compounds that potentiate bone morphogenetic protein-2 activity. Cell Biochemistry and Function. 27: 526-34. PMID 19862690 DOI: 10.1002/Cbf.1615  0.395
2009 Makkar P, Metpally RP, Sangadala S, Reddy BV. Modeling and analysis of MH1 domain of Smads and their interaction with promoter DNA sequence motif. Journal of Molecular Graphics & Modelling. 27: 803-12. PMID 19157940 DOI: 10.1016/J.Jmgm.2008.12.003  0.645
2009 Metpally RP, Reddy BV. Comparative proteome analysis of psychrophilic versus mesophilic bacterial species: Insights into the molecular basis of cold adaptation of proteins. Bmc Genomics. 10: 11. PMID 19133128 DOI: 10.1186/1471-2164-10-11  0.318
2007 Reddy BV, Kaznessis YN. Use of secondary structural information and C alpha-C alpha distance restraints to model protein structures with MODELLER. Journal of Biosciences. 32: 929-36. PMID 17914235 DOI: 10.1007/S12038-007-0093-1  0.449
2007 Sangadala S, Metpally RP, Reddy BV. Molecular interaction between Smurf1 WW2 domain and PPXY motifs of Smad1, Smad5, and Smad6--modeling and analysis. Journal of Biomolecular Structure & Dynamics. 25: 11-23. PMID 17676934 DOI: 10.1080/07391102.2007.10507151  0.462
2007 Sangadala S, Boden SD, Metpally RP, Reddy BV. Modeling and analysis of molecularinteraction between Smurf1-WW2 domain and various isoforms of LIM mineralization protein. Proteins. 68: 690-701. PMID 17510966 DOI: 10.1002/Prot.21429  0.448
2006 Duan Y, Reddy BV, Kaznessis YN. Residue conservation information for generating near-native structures in protein-protein docking. Journal of Bioinformatics and Computational Biology. 4: 793-806. PMID 17007068 DOI: 10.1142/S0219720006002223  0.419
2005 Reddy BV, Kaznessis YN. A quantitative analysis of interfacial amino acid conservation in protein-protein hetero complexes. Journal of Bioinformatics and Computational Biology. 3: 1137-50. PMID 16278951 DOI: 10.1142/S0219720005001429  0.425
2005 Duan Y, Reddy BV, Kaznessis YN. Physicochemical and residue conservation calculations to improve the ranking of protein-protein docking solutions. Protein Science : a Publication of the Protein Society. 14: 316-28. PMID 15659366 DOI: 10.1110/Ps.04941505  0.417
2005 Vicatos S, Reddy BV, Kaznessis Y. Prediction of distant residue contacts with the use of evolutionary information. Proteins. 58: 935-49. PMID 15645442 DOI: 10.1002/Prot.20370  0.408
2002 Reddy BV, Li WW, Bourne PE. Use of conserved key amino acid positions to morph protein folds. Biopolymers. 64: 139-45. PMID 12012349 DOI: 10.1002/Bip.10152  0.417
2002 Li WW, Reddy BV, Tate JG, Shindyalov IN, Bourne PE. CKAAPs DB: a Conserved Key Amino Acid Positions DataBase. Nucleic Acids Research. 30: 409-11. PMID 11752351 DOI: 10.1093/Nar/29.1.329  0.431
2001 Reddy BV, Li WW, Shindyalov IN, Bourne PE. Conserved key amino acid positions (CKAAPs) derived from the analysis of common substructures in proteins. Proteins. 42: 148-63. PMID 11119639 DOI: 10.1002/1097-0134(20010201)42:2<148::Aid-Prot20>3.0.Co;2-R  0.468
1999 Nagarajaram HA, Reddy BV, Blundell TL. Analysis and prediction of inter-strand packing distances between beta-sheets of globular proteins. Protein Engineering. 12: 1055-62. PMID 10611399 DOI: 10.1093/Protein/12.12.1055  0.546
1999 Burke DF, Deane CM, Nagarajaram HA, Campillo N, Martin-Martinez M, Mendes J, Molina F, Perry J, Reddy BV, Soares CM, Steward RE, Williams M, Carrondo MA, Blundell TL, Mizuguchi K. An iterative structure-assisted approach to sequence alignment and comparative modeling. Proteins. 55-60. PMID 10526352 DOI: 10.1002/(Sici)1097-0134(1999)37:3+<55::Aid-Prot8>3.0.Co;2-B  0.514
1999 Reddy BV, Nagarajaram HA, Blundell TL. Analysis of interactive packing of secondary structural elements in alpha/beta units in proteins. Protein Science : a Publication of the Protein Society. 8: 573-86. PMID 10091660 DOI: 10.1110/ps.8.3.573  0.461
1997 Reddy BV, Gopal V, Chatterji D. Recognition of promoter DNA by subdomain 4.2 of Escherichia coli sigma 70: a knowledge based model of -35 hexamer interaction with 4.2 helix-turn-helix motif. Journal of Biomolecular Structure & Dynamics. 14: 407-19. PMID 9172641 DOI: 10.1080/07391102.1997.10508140  0.339
1996 Reddy BV. Structural distribution of dipeptides that are identified to be determinants of intracellular protein stability. Journal of Biomolecular Structure & Dynamics. 14: 201-10. PMID 8913856 DOI: 10.1080/07391102.1996.10508109  0.314
1993 Reddy BV, Blundell TL. Packing of secondary structural elements in proteins. Analysis and prediction of inter-helix distances. Journal of Molecular Biology. 233: 464-79. PMID 8411156 DOI: 10.1006/Jmbi.1993.1524  0.544
1990 Guruprasad K, Reddy BV, Pandit MW. Correlation between stability of a protein and its dipeptide composition: a novel approach for predicting in vivo stability of a protein from its primary sequence. Protein Engineering. 4: 155-61. PMID 2075190 DOI: 10.1093/Protein/4.2.155  0.381
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