William R. Jeffery - Publications

University of Maryland, College Park, College Park, MD 
Evolution of Development

165 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Ma L, Ng M, Shi J, Gore AV, Castranova D, Weinstein BM, Jeffery WR. Publisher Correction: Maternal control of visceral asymmetry evolution in Astyanax cavefish. Scientific Reports. 11: 12934. PMID 34131272 DOI: 10.1038/s41598-021-92148-5  1
2021 Ma L, Ng M, Shi J, Gore AV, Castranova D, Weinstein BM, Jeffery WR. Maternal control of visceral asymmetry evolution in Astyanax cavefish. Scientific Reports. 11: 10312. PMID 33986376 DOI: 10.1038/s41598-021-89702-6  1
2021 Jeffery WR, Gorički Š. Apoptosis is a generator of Wnt-dependent regeneration and homeostatic cell renewal in the ascidian Ciona. Biology Open. 10. PMID 33913473 DOI: 10.1242/bio.058526  0.56
2021 Ma L, Dessiatoun R, Shi J, Jeffery WR. Incremental Temperature Changes for Maximal Breeding and Spawning in Astyanax mexicanus. Journal of Visualized Experiments : Jove. PMID 33645574 DOI: 10.3791/61708  1
2020 Ma L, Gore AV, Castranova D, Shi J, Ng M, Tomins KA, van der Weele CM, Weinstein BM, Jeffery WR. Author Correction: A hypomorphic cystathionine ß-synthase gene contributes to cavefish eye loss by disrupting optic vasculature. Nature Communications. 11: 5458. PMID 33093486 DOI: 10.1038/s41467-020-19340-5  1
2020 Mammola S, Amorim IR, Bichuette ME, Borges PAV, Cheeptham N, Cooper SJB, Culver DC, Deharveng L, Eme D, Ferreira RL, Fišer C, Fišer Ž, Fong DW, Griebler C, Jeffery WR, et al. Fundamental research questions in subterranean biology. Biological Reviews of the Cambridge Philosophical Society. PMID 32841483 DOI: 10.1111/Brv.12642  0.6
2020 Ma L, Gore AV, Castranova D, Shi J, Ng M, Tomins KA, van der Weele CM, Weinstein BM, Jeffery WR. A hypomorphic cystathionine ß-synthase gene contributes to cavefish eye loss by disrupting optic vasculature. Nature Communications. 11: 2772. PMID 32487986 DOI: 10.1038/S41467-020-16497-X  1
2020 Bilandžija H, Hollifield B, Steck M, Meng G, Ng M, Koch AD, Gračan R, Ćetković H, Porter ML, Renner KJ, Jeffery W. Phenotypic plasticity as a mechanism of cave colonization and adaptation. Elife. 9. PMID 32314737 DOI: 10.7554/Elife.51830  0.6
2020 Ma L, Ng M, van der Weele CM, Yoshizawa M, Jeffery WR. Dual roles of the retinal pigment epithelium and lens in cavefish eye degeneration. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 31930686 DOI: 10.1002/Jez.B.22923  1
2020 Bilandžija H, Hollifield B, Steck M, Meng G, Ng M, Koch AD, Gračan R, Ćetković H, Porter ML, Renner KJ, Jeffery W. Author response: Phenotypic plasticity as a mechanism of cave colonization and adaptation Elife. DOI: 10.7554/Elife.51830.Sa2  0.6
2018 Herman A, Brandvain Y, Weagley J, Jeffery WR, Keene AC, Kono TJY, Bilandžija H, Borowsky R, Espinasa L, O'Quin K, Ornelas-García CP, Yoshizawa M, Carlson B, Maldonado E, Gross JB, et al. The role of gene flow in rapid and repeated evolution of cave related traits in Mexican tetra, Astyanax mexicanus. Molecular Ecology. PMID 30252986 DOI: 10.1111/Mec.14877  1
2018 Gore AV, Rohner N, Rétaux S, Jeffery WR. Seeing a bright future for a blind fish. Developmental Biology. 441: 207-208. PMID 30166000 DOI: 10.1016/J.Ydbio.2018.08.004  0.48
2018 Ma L, Strickler AG, Parkhurst A, Yoshizawa M, Shi J, Jeffery WR. Maternal Genetic Effects in Astyanax Cavefish Development. Developmental Biology. PMID 30031754 DOI: 10.1016/J.Ydbio.2018.07.014  1
2018 Gore AV, Tomins KA, Iben J, Ma L, Castranova D, Davis AE, Parkhurst A, Jeffery WR, Weinstein BM. An epigenetic mechanism for cavefish eye degeneration. Nature Ecology & Evolution. PMID 29807993 DOI: 10.1038/S41559-018-0569-4  1
2018 Bilandžija H, Abraham L, Ma L, Renner KJ, Jeffery WR. Behavioural changes controlled by catecholaminergic systems explain recurrent loss of pigmentation in cavefish. Proceedings. Biological Sciences. 285. PMID 29720416 DOI: 10.1098/Rspb.2018.0243  1
2018 Yoshizawa M, Hixon E, Jeffery WR. Neural Crest Transplantation Reveals Key Roles in the Evolution of Cavefish Development. Integrative and Comparative Biology. PMID 29718239 DOI: 10.1093/Icb/Icy006  1
2017 Gorički Š, Stanković D, Snoj A, Kuntner M, Jeffery WR, Trontelj P, Pavićević M, Grizelj Z, Năpăruş-Aljančič M, Aljančič G. Environmental DNA in subterranean biology: range extension and taxonomic implications for Proteus. Scientific Reports. 7: 45054. PMID 28345609 DOI: 10.1038/Srep45054  0.56
2016 Kowalko JE, Ma L, Jeffery WR. Genome Editing in Astyanax mexicanus Using Transcription Activator-like Effector Nucleases (TALENs). Journal of Visualized Experiments : Jove. PMID 27404092 DOI: 10.3791/54113  1
2015 O'Quin KE, Doshi P, Lyon A, Hoenemeyer E, Yoshizawa M, Jeffery WR. Complex Evolutionary and Genetic Patterns Characterize the Loss of Scleral Ossification in the Blind Cavefish Astyanax mexicanus. Plos One. 10: e0142208. PMID 26649887 DOI: 10.1371/Journal.Pone.0142208  1
2015 Hamada M, Goricki S, Byerly MS, Satoh N, Jeffery WR. Evolution of the chordate regeneration blastema: Differential gene expression and conserved role of notch signaling during siphon regeneration in the ascidian Ciona. Developmental Biology. 405: 304-15. PMID 26206613 DOI: 10.1016/J.Ydbio.2015.07.017  1
2015 Ma L, Jeffery WR, Essner JJ, Kowalko JE. Genome editing using TALENs in blind Mexican Cavefish, Astyanax mexicanus. Plos One. 10: e0119370. PMID 25774757 DOI: 10.1371/Journal.Pone.0119370  1
2015 Yoshizawa M, Robinson BG, Duboué ER, Masek P, Jaggard JB, O'Quin KE, Borowsky RL, Jeffery WR, Keene AC. Distinct genetic architecture underlies the emergence of sleep loss and prey-seeking behavior in the Mexican cavefish. Bmc Biology. 13: 15. PMID 25761998 DOI: 10.1186/S12915-015-0119-3  1
2015 Jeffery WR. The Tunicate CIONA: A Model System for Understanding the Relationship Between Regeneration and Aging. Invertebrate Reproduction & Development. 59: 17-22. PMID 25544801 DOI: 10.1080/07924259.2014.925515  1
2015 Jeffery WR. Closing the wounds: one hundred and twenty five years of regenerative biology in the ascidian Ciona intestinalis. Genesis (New York, N.Y. : 2000). 53: 48-65. PMID 24974948 DOI: 10.1002/Dvg.22799  1
2015 Jeffery WR. Regeneration, Stem Cells, and Aging in the Tunicate Ciona: Insights from the Oral Siphon International Review of Cell and Molecular Biology. DOI: 10.1016/bs.ircmb.2015.06.005  1
2015 Jeffery WR. The Comparative Organismal Approach in Evolutionary Developmental Biology: Insights from Ascidians and Cavefish Current Topics in Developmental Biology. DOI: 10.1016/bs.ctdb.2015.10.006  1
2014 Espinasa L, Bibliowicz J, Jeffery WR, Rétaux S. Enhanced prey capture skills in Astyanax cavefish larvae are independent from eye loss. Evodevo. 5: 35. PMID 25908953 DOI: 10.1186/2041-9139-5-35  1
2014 McGaugh SE, Gross JB, Aken B, Blin M, Borowsky R, Chalopin D, Hinaux H, Jeffery WR, Keene A, Ma L, Minx P, Murphy D, O'Quin KE, Rétaux S, Rohner N, et al. The cavefish genome reveals candidate genes for eye loss. Nature Communications. 5: 5307. PMID 25329095 DOI: 10.1038/Ncomms6307  1
2014 Ma L, Parkhurst A, Jeffery WR. The role of a lens survival pathway including sox2 and αA-crystallin in the evolution of cavefish eye degeneration. Evodevo. 5: 28. PMID 25210614 DOI: 10.1186/2041-9139-5-28  1
2014 Yoshizawa M, Jeffery WR, van Netten SM, McHenry MJ. The sensitivity of lateral line receptors and their role in the behavior of Mexican blind cavefish (Astyanax mexicanus). The Journal of Experimental Biology. 217: 886-95. PMID 24265419 DOI: 10.1242/Jeb.094599  1
2014 Ma L, Jeffery WR. Eye development (vertebrate) Access Science. DOI: 10.1036/1097-8542.Yb150966  1
2014 Hamada M, Goricki S, Byerly MS, Satoh N, Jeffery WR. Evolution of the chordate regeneration blastema: Differential gene expression and conserved role of notch signaling during siphon regeneration in the ascidian Ciona Developmental Biology. DOI: 10.1016/j.ydbio.2015.07.017  1
2013 Rohner N, Jarosz DF, Kowalko JE, Yoshizawa M, Jeffery WR, Borowsky RL, Lindquist S, Tabin CJ. Cryptic variation in morphological evolution: HSP90 as a capacitor for loss of eyes in cavefish. Science (New York, N.Y.). 342: 1372-5. PMID 24337296 DOI: 10.1126/Science.1240276  1
2013 Bilandžija H, Ma L, Parkhurst A, Jeffery WR. A potential benefit of albinism in Astyanax cavefish: downregulation of the oca2 gene increases tyrosine and catecholamine levels as an alternative to melanin synthesis. Plos One. 8: e80823. PMID 24282555 DOI: 10.1371/Journal.Pone.0080823  1
2013 Kowalko JE, Rohner N, Linden TA, Rompani SB, Warren WC, Borowsky R, Tabin CJ, Jeffery WR, Yoshizawa M. Convergence in feeding posture occurs through different genetic loci in independently evolved cave populations of Astyanax mexicanus. Proceedings of the National Academy of Sciences of the United States of America. 110: 16933-8. PMID 24085851 DOI: 10.1073/Pnas.1317192110  1
2013 Kowalko JE, Rohner N, Rompani SB, Peterson BK, Linden TA, Yoshizawa M, Kay EH, Weber J, Hoekstra HE, Jeffery WR, Borowsky R, Tabin CJ. Loss of schooling behavior in cavefish through sight-dependent and sight-independent mechanisms. Current Biology : Cb. 23: 1874-83. PMID 24035545 DOI: 10.1016/J.Cub.2013.07.056  1
2013 Yoshizawa M, O'Quin KE, Jeffery WR. QTL clustering as a mechanism for rapid multi-trait evolution. Communicative & Integrative Biology. 6: e24548. PMID 23956812 DOI: 10.4161/Cib.24548  1
2013 Yoshizawa M, O'Quin KE, Jeffery WR. Evolution of an adaptive behavior and its sensory receptors promotes eye regression in blind cavefish: response to Borowsky (2013). Bmc Biology. 11: 82. PMID 23844745 DOI: 10.1186/1741-7007-11-82  1
2013 O'Quin KE, Yoshizawa M, Doshi P, Jeffery WR. Quantitative genetic analysis of retinal degeneration in the blind cavefish Astyanax mexicanus. Plos One. 8: e57281. PMID 23437360 DOI: 10.1371/Journal.Pone.0057281  1
2013 Hinaux H, Poulain J, Da Silva C, Noirot C, Jeffery WR, Casane D, Rétaux S. De novo sequencing of Astyanax mexicanus surface fish and Pachón cavefish transcriptomes reveals enrichment of mutations in cavefish putative eye genes. Plos One. 8: e53553. PMID 23326453 DOI: 10.1371/Journal.Pone.0053553  1
2012 Protas M, Jeffery WR. Evolution and development in cave animals: from fish to crustaceans. Wiley Interdisciplinary Reviews. Developmental Biology. 1: 823-45. PMID 23580903 DOI: 10.1002/Wdev.61  1
2012 Yoshizawa M, Yamamoto Y, O'Quin KE, Jeffery WR. Evolution of an adaptive behavior and its sensory receptors promotes eye regression in blind cavefish. Bmc Biology. 10: 108. PMID 23270452 DOI: 10.1186/1741-7007-10-108  1
2012 Bilandžija H, Cetković H, Jeffery WR. Evolution of albinism in cave planthoppers by a convergent defect in the first step of melanin biosynthesis. Evolution & Development. 14: 196-203. PMID 23017027 DOI: 10.1111/J.1525-142X.2012.00535.X  1
2012 Yoshizawa M, Ashida G, Jeffery WR. Parental genetic effects in a cavefish adaptive behavior explain disparity between nuclear and mitochondrial DNA. Evolution; International Journal of Organic Evolution. 66: 2975-82. PMID 22946818 DOI: 10.1111/J.1558-5646.2012.01651.X  1
2012 Jeffery WR. Siphon regeneration capacity is compromised during aging in the ascidian Ciona intestinalis. Mechanisms of Ageing and Development. 133: 629-36. PMID 22935550 DOI: 10.1016/J.Mad.2012.08.003  1
2012 Gallo ND, Jeffery WR. Evolution of space dependent growth in the teleost Astyanax mexicanus. Plos One. 7: e41443. PMID 22870223 DOI: 10.1371/Journal.Pone.0041443  1
2012 Jeffery WR. Astyanax Mexicanus: A Model Organism for Evolution and Adaptation Encyclopedia of Caves. 36-43. DOI: 10.1016/B978-0-12-383832-2.00006-2  1
2011 Yoshizawa M, Jeffery WR. Evolutionary tuning of an adaptive behavior requires enhancement of the neuromast sensory system. Communicative & Integrative Biology. 4: 89-91. PMID 21509190 DOI: 10.4161/Cib.14118  1
2011 Yamamoto Y, Jeffery WR. Bony fishes | Blind Cavefish Encyclopedia of Fish Physiology. 3: 1843-1849. DOI: 10.1016/B978-0-12-374553-8.00245-8  1
2010 Yoshizawa M, Goricki S, Soares D, Jeffery WR. Evolution of a behavioral shift mediated by superficial neuromasts helps cavefish find food in darkness. Current Biology : Cb. 20: 1631-6. PMID 20705469 DOI: 10.1016/J.Cub.2010.07.017  1
2010 Jeffery WR. Pleiotropy and eye degeneration in cavefish. Heredity. 105: 495-6. PMID 20179737 DOI: 10.1038/Hdy.2010.7  1
2010 Auger H, Sasakura Y, Joly JS, Jeffery WR. Regeneration of oral siphon pigment organs in the ascidian Ciona intestinalis. Developmental Biology. 339: 374-89. PMID 20059994 DOI: 10.1016/J.Ydbio.2009.12.040  1
2009 Strickler AG, Jeffery WR. Differentially expressed genes identified by cross-species microarray in the blind cavefish Astyanax. Integrative Zoology. 4: 99-109. PMID 21392280 DOI: 10.1111/J.1749-4877.2008.00139.X  1
2009 Jeffery WR. Regressive evolution in Astyanax cavefish. Annual Review of Genetics. 43: 25-47. PMID 19640230 DOI: 10.1146/Annurev-Genet-102108-134216  1
2009 Jeffery WR. Chapter 8. Evolution and development in the cavefish Astyanax. Current Topics in Developmental Biology. 86: 191-221. PMID 19361694 DOI: 10.1016/S0070-2153(09)01008-4  1
2009 Jeffery WR. Current topics in developmental biology. Evolution and development. Preface. Current Topics in Developmental Biology. 86: xi-xii. PMID 19361686 DOI: 10.1016/S0070-2153(09)01012-6  1
2009 Yamamoto Y, Byerly MS, Jackman WR, Jeffery WR. Pleiotropic functions of embryonic sonic hedgehog expression link jaw and taste bud amplification with eye loss during cavefish evolution. Developmental Biology. 330: 200-11. PMID 19285488 DOI: 10.1016/J.Ydbio.2009.03.003  1
2008 Gross JB, Protas M, Conrad M, Scheid PE, Vidal O, Jeffery WR, Borowsky R, Tabin CJ. Synteny and candidate gene prediction using an anchored linkage map of Astyanax mexicanus. Proceedings of the National Academy of Sciences of the United States of America. 105: 20106-11. PMID 19104060 DOI: 10.1073/Pnas.0806238105  1
2008 Jeffery WR, Chiba T, Krajka FR, Deyts C, Satoh N, Joly JS. Trunk lateral cells are neural crest-like cells in the ascidian Ciona intestinalis: insights into the ancestry and evolution of the neural crest. Developmental Biology. 324: 152-60. PMID 18801357 DOI: 10.1016/J.Ydbio.2008.08.022  1
2008 Jeffery WR. Emerging model systems in evo-devo: cavefish and microevolution of development. Evolution & Development. 10: 265-72. PMID 18460088 DOI: 10.1111/J.1525-142X.2008.00235.X  1
2008 Yoshizawa M, Jeffery WR. Shadow response in the blind cavefish Astyanax reveals conservation of a functional pineal eye. The Journal of Experimental Biology. 211: 292-9. PMID 18203983 DOI: 10.1242/Jeb.012864  1
2007 Strickler AG, Byerly MS, Jeffery WR. Lens gene expression analysis reveals downregulation of the anti-apoptotic chaperone alphaA-crystallin during cavefish eye degeneration. Development Genes and Evolution. 217: 771-82. PMID 18026750 DOI: 10.1007/S00427-007-0190-Z  1
2007 Strickler AG, Yamamoto Y, Jeffery WR. The lens controls cell survival in the retina: Evidence from the blind cavefish Astyanax. Developmental Biology. 311: 512-23. PMID 17936264 DOI: 10.1016/J.Ydbio.2007.08.050  1
2007 Alunni A, Menuet A, Candal E, Pénigault JB, Jeffery WR, Rétaux S. Developmental mechanisms for retinal degeneration in the blind cavefish Astyanax mexicanus. The Journal of Comparative Neurology. 505: 221-33. PMID 17853442 DOI: 10.1002/Cne.21488  1
2007 Jeffery WR. Chordate ancestry of the neural crest: new insights from ascidians. Seminars in Cell & Developmental Biology. 18: 481-91. PMID 17509911 DOI: 10.1016/J.Semcdb.2007.04.005  1
2007 Menuet A, Alunni A, Joly JS, Jeffery WR, Rétaux S. Expanded expression of Sonic Hedgehog in Astyanax cavefish: multiple consequences on forebrain development and evolution. Development (Cambridge, England). 134: 845-55. PMID 17251267 DOI: 10.1242/Dev.02780  1
2006 Jeffery WR. Ascidian neural crest-like cells: phylogenetic distribution, relationship to larval complexity, and pigment cell fate. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 306: 470-80. PMID 16619245 DOI: 10.1002/Jez.B.21109  1
2006 Espinasa L, Jeffery WR. Conservation of retinal circadian rhythms during cavefish eye degeneration. Evolution & Development. 8: 16-22. PMID 16409379 DOI: 10.1111/J.1525-142X.2006.05071.X  1
2006 Protas ME, Hersey C, Kochanek D, Zhou Y, Wilkens H, Jeffery WR, Zon LI, Borowsky R, Tabin CJ. Genetic analysis of cavefish reveals molecular convergence in the evolution of albinism. Nature Genetics. 38: 107-11. PMID 16341223 DOI: 10.1038/Ng1700  1
2006 Jeffery WR. Regressive evolution of pigmentation in the cavefish Astyanax Israel Journal of Ecology and Evolution. 52: 405-422. DOI: 10.1560/Ijee_52_3-4_405  1
2005 Kocher TD, Jeffery WR, Parichy DM, Peichel CL, Streelman JT, Thorgaard GH. Special feature--roundtable discussion. Fish models for studying adaptive evolution and speciation. Zebrafish. 2: 147-56. PMID 18248189 DOI: 10.1089/Zeb.2005.2.147  1
2005 Espinasa L, Yamamoto Y, Jeffery WR. Non-optical releasers for aggressive behavior in blind and blinded Astyanax (Teleostei, Characidae). Behavioural Processes. 70: 144-8. PMID 16054777 DOI: 10.1016/J.Beproc.2005.06.003  1
2005 Evans TG, Yamamoto Y, Jeffery WR, Krone PH. Zebrafish Hsp70 is required for embryonic lens formation. Cell Stress & Chaperones. 10: 66-78. PMID 15832949 DOI: 10.1379/Csc-79R.1  1
2005 Vihtelic TS, Yamamoto Y, Springer SS, Jeffery WR, Hyde DR. Lens opacity and photoreceptor degeneration in the zebrafish lens opaque mutant. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 233: 52-65. PMID 15765514 DOI: 10.1002/Dvdy.20294  1
2005 Jeffery WR. Adaptive evolution of eye degeneration in the Mexican blind cavefish. The Journal of Heredity. 96: 185-96. PMID 15653557 DOI: 10.1093/Jhered/Esi028  1
2004 Soares D, Yamamoto Y, Strickler AG, Jeffery WR. The lens has a specific influence on optic nerve and tectum development in the blind cavefish Astyanax. Developmental Neuroscience. 26: 308-17. PMID 15855759 DOI: 10.1159/000082272  1
2004 Hooven TA, Yamamoto Y, Jeffery WR. Blind cavefish and heat shock protein chaperones: a novel role for hsp90alpha in lens apoptosis. The International Journal of Developmental Biology. 48: 731-8. PMID 15558465 DOI: 10.1387/Ijdb.041874Th  1
2004 Yamamoto Y, Stock DW, Jeffery WR. Hedgehog signalling controls eye degeneration in blind cavefish. Nature. 431: 844-7. PMID 15483612 DOI: 10.1038/Nature02864  1
2004 Jeffery WR, Strickler AG, Yamamoto Y. Migratory neural crest-like cells form body pigmentation in a urochordate embryo. Nature. 431: 696-9. PMID 15470430 DOI: 10.1038/Nature02975  1
2004 McCauley DW, Hixon E, Jeffery WR. Evolution of pigment cell regression in the cavefish Astyanax: a late step in melanogenesis. Evolution & Development. 6: 209-18. PMID 15230961 DOI: 10.1111/J.1525-142X.2004.04026.X  1
2004 Jeffery WR. Evolution and development of brain sensory organs in molgulid ascidians. Evolution & Development. 6: 170-9. PMID 15099304 DOI: 10.1111/J.1525-142X.2004.04022.X  1
2004 Reza HM, Yasuda K, Mazzoni EO, Desplan C, Çelik A, Colicos MA, Firth SI, Bosze J, Goldstein J, Feller MB, Zilinski C, Brownell I, Hashimoto R, Medina-Martinez O, Swindell EC, ... ... Jeffery WR, et al. Contents Vol. 26, 2004 Developmental Neuroscience. 26: 471-472. DOI: 10.1159/000085532  1
2004 Reza HM, Yasuda K, Mazzoni EO, Desplan C, Çelik A, Colicos MA, Firth SI, Bosze J, Goldstein J, Feller MB, Zilinski C, Brownell I, Hashimoto R, Medina-Martinez O, Swindell EC, ... ... Jeffery WR, et al. Subject Index Vol. 26, 2004 Developmental Neuroscience. 26: 469-470. DOI: 10.1159/000085531  1
2003 Jeffery WR, Strickler AG, Yamamoto Y. To see or not to see: evolution of eye degeneration in mexican blind cavefish. Integrative and Comparative Biology. 43: 531-41. PMID 21680461 DOI: 10.1093/Icb/43.4.531  1
2003 Yamamoto Y, Espinasa L, Stock DW, Jeffery WR. Development and evolution of craniofacial patterning is mediated by eye-dependent and -independent processes in the cavefish Astyanax. Evolution & Development. 5: 435-46. PMID 12950623 DOI: 10.1046/J.1525-142X.2003.03050.X  1
2003 Espinasa L, Jeffery WR. A troglomorphic sculpin (Pisces: Cottidae) population: Geography, morphology and conservation status Journal of Cave and Karst Studies. 65: 93-100.  1
2002 Yamamoto Y, Jeffery WR. Probing teleost eye development by lens transplantation. Methods (San Diego, Calif.). 28: 420-6. PMID 12507460 DOI: 10.1016/S1046-2023(02)00261-X  1
2002 Jeffery WR. Ascidian gene-expression profiles. Genome Biology. 3: REVIEWS1030. PMID 12372151 DOI: 10.1186/Gb-2002-3-10-Reviews1030  1
2002 Jeffery WR. Programmed cell death in the ascidian embryo: modulation by FoxA5 and Manx and roles in the evolution of larval development. Mechanisms of Development. 118: 111-24. PMID 12351175 DOI: 10.1016/S0925-4773(02)00236-8  1
2002 Strickler AG, Famuditimi K, Jeffery WR. Retinal homeobox genes and the role of cell proliferation in cavefish eye degeneration. The International Journal of Developmental Biology. 46: 285-94. PMID 12068949 DOI: 10.1387/Ijdb.12068949  1
2002 Jeffery WR. Role of PCNA and ependymal cells in ascidian neural development. Gene. 287: 97-105. PMID 11992727 DOI: 10.1016/S0378-1119(01)00864-2  1
2002 Dowling TE, Martasian DP, Jeffery WR. Evidence for multiple genetic forms with similar eyeless phenotypes in the blind cavefish, Astyanax mexicanus. Molecular Biology and Evolution. 19: 446-55. PMID 11919286 DOI: 10.1093/Oxfordjournals.Molbev.A004100  1
2001 Vihtelic TS, Yamamoto Y, Sweeney MT, Jeffery WR, Hyde DR. Arrested differentiation and epithelial cell degeneration in zebrafish lens mutants. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 222: 625-36. PMID 11748831 DOI: 10.1002/Dvdy.1217  1
2001 Strickler AG, Yamamoto Y, Jeffery WR. Early and late changes in Pax6 expression accompany eye degeneration during cavefish development. Development Genes and Evolution. 211: 138-44. PMID 11455425 DOI: 10.1007/S004270000123  1
2001 Jeffery WR. Cavefish as a model system in evolutionary developmental biology. Developmental Biology. 231: 1-12. PMID 11180948 DOI: 10.1006/Dbio.2000.0121  1
2001 Jeffery WR. Determinants of cell and positional fate in ascidian embryos. International Review of Cytology. 203: 3-62. PMID 11131520 DOI: 10.1016/S0074-7696(01)03003-0  1
2000 Jeffery WR, Strickler AG, Guiney S, Heyser DG, Tomarev SI. Prox 1 in eye degeneration and sensory organ compensation during development and evolution of the cavefish Astyanax Development Genes and Evolution. 210: 223-230. PMID 11180826 DOI: 10.1007/S004270050308  1
2000 Yamamoto Y, Jeffery WR. Central role for the lens in cave fish eye degeneration. Science (New York, N.Y.). 289: 631-3. PMID 10915628 DOI: 10.1126/Science.289.5479.631  1
1999 Olsen CL, Natzle JE, Jeffery WR. The forkhead gene FH1 is involved in evolutionary modification of the ascidian tadpole larva. Mechanisms of Development. 85: 49-58. PMID 10415346 DOI: 10.1016/S0925-4773(99)00061-1  1
1999 Jeffery WR, Swalla BJ, Ewing N, Kusakabe T. Evolution of the ascidian anural larva: evidence from embryos and molecules. Molecular Biology and Evolution. 16: 646-54. PMID 10335658 DOI: 10.1093/Oxfordjournals.Molbev.A026147  1
1999 Swalla BJ, Just MA, Pederson EL, Jeffery WR. A multigene locus containing the Manx and bobcat genes is required for development of chordate features in the ascidian tadpole larva. Development (Cambridge, England). 126: 1643-53. PMID 10079227  1
1998 Jeffery WR, Ewing N, Machula J, Olsen CL, Swalla BJ. Cytoskeletal actin genes function downstream of HNF-3beta in ascidian notochord development. The International Journal of Developmental Biology. 42: 1085-92. PMID 9879705 DOI: 10.1387/Ijdb.9879705  1
1998 Jeffery WR, Martasian DP. Evolution of eye regression in the cavefish astyanax: apoptosis and the pax-6 gene American Zoologist. 38: 685-696. DOI: 10.1093/Icb/38.4.685  1
1997 Olsen CL, Jeffery WR. A forkhead gene related to HNF-3beta is required for gastrulation and axis formation in the ascidian embryo. Development (Cambridge, England). 124: 3609-19. PMID 9342053  1
1997 Tagawa K, Jeffery WR, Satoh N. The recently-described ascidian species Molgula tectiformis is a direct developer. Zoological Science. 14: 297-303. PMID 9256052 DOI: 10.2108/Zsj.14.297  1
1997 Kusakabe T, Araki I, Satoh N, Jeffery WR. Evolution of chordate actin genes: evidence from genomic organization and amino acid sequences. Journal of Molecular Evolution. 44: 289-98. PMID 9060395 DOI: 10.1007/Pl00006146  1
1997 Jeffery WR. Evolution of ascidian development: Interspecific modifications of the tadpole larva have revealed some of the mechanisms of evolutionary change in development Bioscience. 47: 417-425.  1
1996 Swalla BJ, Jeffery WR. Localization of ribosomal protein L5 mRNA in myoplasm during ascidian development. Developmental Genetics. 19: 258-67. PMID 8952068 DOI: 10.1002/(Sici)1520-6408(1996)19:3<258::Aid-Dvg9>3.0.Co;2-8  1
1996 Swalla BJ, Jeffery WR. Requirement of the Manx gene for expression of chordate features in a tailless ascidian larva. Science (New York, N.Y.). 274: 1205-8. PMID 8895472 DOI: 10.1126/Science.274.5290.1205  1
1996 Ma L, Swalla BJ, Zhou J, Dobias SL, Bell JR, Chen J, Maxson RE, Jeffery WR. Expression of an Msx homeobox gene in ascidians: insights into the archetypal chordate expression pattern. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 205: 308-18. PMID 8850566 DOI: 10.1002/(Sici)1097-0177(199603)205:3<308::Aid-Aja10>3.0.Co;2-0  1
1996 Swalla BJ, Jeffery WR. PCNA mRNA has a 3'UTR antisense to yellow crescent RNA and is localized in ascidian eggs and embryos. Developmental Biology. 178: 23-34. PMID 8812106 DOI: 10.1006/Dbio.1996.0195  1
1996 Kusakabe T, Swalla BJ, Satoh N, Jeffery WR. Mechanism of an evolutionary change in muscle cell differentiation in ascidians with different modes of development. Developmental Biology. 174: 379-92. PMID 8631509 DOI: 10.1006/Dbio.1996.0082  1
1995 Jeffery WR. Development and evolution of an egg cytoskeletal domain in ascidians. Current Topics in Developmental Biology. 31: 243-76. PMID 8746667 DOI: 10.1016/S0070-2153(08)60230-6  1
1995 Hadfield KA, Swalla BJ, Jeffery WR. Multiple origins of anural development in ascidians inferred from rDNA sequences. Journal of Molecular Evolution. 40: 413-27. PMID 7646666 DOI: 10.1007/Bf00164028  1
1995 Swalla BJ, Jeffery WR. A maternal RNA localized in the yellow crescent is segregated to the larval muscle cells during ascidian development. Developmental Biology. 170: 353-64. PMID 7544307 DOI: 10.1006/Dbio.1995.1221  1
1995 Satoh N, Jeffery WR. Chasing tails in ascidians: developmental insights into the origin and evolution of chordates. Trends in Genetics : Tig. 11: 354-9. PMID 7482787 DOI: 10.1016/S0168-9525(00)89106-4  1
1994 Swalla BJ, White ME, Zhou J, Jeffery WR. Heterochronic expression of an adult muscle actin gene during ascidian larval development. Developmental Genetics. 15: 51-63. PMID 8187350 DOI: 10.1002/Dvg.1020150107  1
1994 Jeffery WR. Actin as a tissue-specific marker in studies of ascidian development and evolution Advances in Developmental Biology (1992). 3: 137-183.  1
1993 Kovilur S, Jacobson JW, Beach RL, Jeffery WR, Tomlinson CR. Evolution of the chordate muscle actin gene. Journal of Molecular Evolution. 36: 361-8. PMID 8315656 DOI: 10.1007/Bf00182183  0.68
1993 Swalla BJ, Makabe KW, Satoh N, Jeffery WR. Novel genes expressed differentially in ascidians with alternate modes of development. Development (Cambridge, England). 119: 307-18. PMID 8287790  1
1993 Jeffery WR, Swalla BJ. An ankryin-like protein in ascidian eggs and its role in the evolution of direct development. Zygote (Cambridge, England). 1: 197-208. PMID 8081816 DOI: 10.1017/S0967199400001477  1
1993 Jeffery WR. The myoplasm of ascidian eggs: A plasma membrane skeleton which is modified during evolution Biological Research. 26: 481-490.  1
1992 Jeffery WR, Swalla BJ. Evolution of alternate modes of development in ascidians. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 14: 219-26. PMID 1596271 DOI: 10.1002/Bies.950140404  1
1992 Beach RL, Jeffery WR. Multiple actin genes encoding the same alpha-muscle isoform are expressed during ascidian development. Developmental Biology. 151: 55-66. PMID 1577198 DOI: 10.1016/0012-1606(92)90213-Z  1
1992 Jeffery WR, Swalla BJ. Factors necessary for restoring an evolutionary change in an anural ascidian embryo. Developmental Biology. 153: 194-205. PMID 1397677 DOI: 10.1016/0012-1606(92)90105-P  1
1992 Jeffery WR. A gastrulation center in the ascidian egg. Development (Cambridge, England). Supplement. 53-63. PMID 1299368  1
1992 Swalla BJ, Jeffery WR. Vestigial brain melanocyte development during embryogenesis of an anural ascidian Development Growth and Differentiation. 34: 17-25. DOI: 10.1111/J.1440-169X.1992.00017.X  1
1991 Jeffery WR, Swalla BJ. An evolutionary change in the muscle lineage of an anural ascidian embryo is restored by interspecific hybridization with a urodele ascidian. Developmental Biology. 145: 328-37. PMID 2040375 DOI: 10.1016/0012-1606(91)90131-L  1
1991 Swalla BJ, Badgett MR, Jeffery WR. Identification of a cytoskeletal protein localized in the myoplasm of ascidian eggs: localization is modified during anural development. Development (Cambridge, England). 111: 425-36. PMID 1893869  1
1990 Beach RL, Jeffery WR. Temporal and spatial expression of a cytoskeletal actin gene in the ascidian Styela clava. Developmental Genetics. 11: 2-14. PMID 2361333 DOI: 10.1002/Dvg.1020110103  1
1990 Swalla BJ, Jeffery WR. Interspecific hybridization between an anural and urodele ascidian: differential expression of urodele features suggests multiple mechanisms control anural development. Developmental Biology. 142: 319-34. PMID 2124192 DOI: 10.1016/0012-1606(90)90353-K  1
1990 Jeffery WR, Swalla BJ. The myoplasm of ascidian eggs: a localized cytoskeletal domain with multiple roles in embryonic development. Seminars in Cell Biology. 1: 373-81. PMID 2102391  1
1989 Venuti JM, Jeffery WR. Cell lineage and determination of cell fate in ascidian embryos. The International Journal of Developmental Biology. 33: 197-212. PMID 2701421 DOI: 10.1387/Ijdb.2701421  1
1988 Bates WR, Jeffery WR. Polarization of ooplasmic segregation and dorsal-ventral axis determination in ascidian embryos. Developmental Biology. 130: 98-107. PMID 3141234 DOI: 10.1016/0012-1606(88)90417-4  1
1987 Bates WR, Jeffery WR. Alkaline phosphatase expression in ascidian egg fragments and andromerogons. Developmental Biology. 119: 382-9. PMID 3803710 DOI: 10.1016/0012-1606(87)90043-1  1
1987 Tomlinson CR, Bates WR, Jeffery WR. Development of a muscle actin specified by maternal and zygotic mRNA in ascidian embryos. Developmental Biology. 123: 470-82. PMID 3653520 DOI: 10.1016/0012-1606(87)90404-0  1
1987 Brodeur RD, Jeffery WR. Translational control and the cytoskeleton in Physarum polycephalum. Cell Motility and the Cytoskeleton. 7: 129-37. PMID 3581185 DOI: 10.1002/Cm.970070205  1
1987 Tomlinson CR, Beach RL, Jeffery WR. Differential expression of a muscle actin gene in muscle cell lineages of ascidian embryos. Development (Cambridge, England). 101: 751-65. PMID 3503695  0.68
1987 Bates WR, Jeffery WR. Localization of axial determinants in the vegetal pole region of ascidian eggs Developmental Biology. 124: 65-76. DOI: 10.1016/0012-1606(87)90460-X  1
1986 Halsell SR, Jeffery WR. Role of mRNA 5'-terminal caps in translational dormancy of Physarum polycephalum. Biochemical and Biophysical Research Communications. 134: 469-76. PMID 3947335 DOI: 10.1016/S0006-291X(86)80444-2  1
1986 Bates WR, Jeffery WR. Expression of alkaline phosphatase determinants in egg fragments and andromerogons of ascidians. Progress in Clinical and Biological Research. 217: 341-4. PMID 3749188  1
1986 Jeffery WR, Bates WR, Beach RL, Tomlinson CR. Is maternal mRNA a determinant of tissue-specific proteins in ascidian embryos? Journal of Embryology and Experimental Morphology. 97: 1-14. PMID 3625106  1
1985 Swalla BJ, Moon RT, Jeffery WR. Developmental significance of a cortical cytoskeletal domain in Chaetopterus eggs. Developmental Biology. 111: 434-50. PMID 2412913 DOI: 10.1016/0012-1606(85)90496-8  1
1984 Jeffery WR, Meier S. Ooplasmic segregation of the myoplasmic actin network in stratified ascidian eggs Wilhelm Roux's Archives of Developmental Biology. 193: 257-262. DOI: 10.1007/BF01260348  1
1983 Jeffery WR, Wilson LJ. Localization of messenger RNA in the cortex of Chaetopterus eggs and early embryos. Journal of Embryology and Experimental Morphology. 75: 225-39. PMID 6684146  1
1983 Jeffery WR, Tomlinson CR, Brodeur RD. Localization of actin messenger RNA during early ascidian development. Developmental Biology. 99: 408-17. PMID 6194032 DOI: 10.1016/0012-1606(83)90290-7  1
1983 Jeffery WR, Meier S. A yellow crescent cytoskeletal domain in ascidian eggs and its role in early development. Developmental Biology. 96: 125-43. PMID 6186551 DOI: 10.1016/0012-1606(83)90317-2  1
1983 Moon RT, Nicosia RF, Olsen C, Hille MB, Jeffery WR. The cytoskeletal framework of sea urchin eggs and embryos: developmental changes in the association of messenger RNA. Developmental Biology. 95: 447-58. PMID 6186548 DOI: 10.1016/0012-1606(83)90046-5  1
1982 Capco DG, Jeffrey WR. Transient localizations of messenger RNA in Xenopus laevis oocytes. Developmental Biology. 89: 1-12. PMID 6172301 DOI: 10.1016/0012-1606(82)90288-3  1
1981 Adams DS, Noonan D, Jeffery WR. Cytoplasmic polyadenylate processing events accompany the transfer of mRNA from the free mRNP particles to the polysomes in Physarum. Proceedings of the National Academy of Sciences of the United States of America. 78: 83-7. PMID 6941265 DOI: 10.1073/Pnas.78.1.83  1
1981 Adams DS, Noonan D, Jeffery WR. Stored messenger ribonucleoprotein particles in differentiated sclerotia of Physarum polycephalum. Differentiation; Research in Biological Diversity. 20: 177-87. PMID 6175547 DOI: 10.1111/J.1432-0436.1981.Tb01174.X  1
1981 Capco DG, Jeffery WR. Regional accumulation of vegetal pole poly(A)+ RNA injected into fertilized Xenopus eggs. Nature. 294: 255-7. PMID 6170892 DOI: 10.1038/294255A0  1
1981 Jeffery WR, Adams DS, Noonan D. Cytoplasmic processing events in the polyadenylate region of Physarum messenger RNA. Molecular Biology Reports. 7: 63-70. PMID 6166854 DOI: 10.1007/Bf00778735  1
1980 Adams DS, Noonan D, Jeffery WR. A model for the organization of the poly(A) . protein complex in messenger ribonucleoprotein. Febs Letters. 114: 115-8. PMID 7380010 DOI: 10.1016/0014-5793(80)80872-6  1
1980 Adams DS, Noonan D, Jeffery WR. The poly(adenylic acid)-protein complex is restricted to the nonpolysomal messenger ribonucleoprotein of Physarum polycephalum. Biochemistry. 19: 1965-70. PMID 7378386 DOI: 10.1021/Bi00550A036  1
1980 Adams DS, Noonan D, Jeffery WR. An improved method for the isolation of polysomes from synchronous macroplasmodia of Physarum polycephalum. Analytical Biochemistry. 103: 408-12. PMID 6770713 DOI: 10.1016/0003-2697(80)90631-4  1
1979 Capco DG, Jeffery WR. Origin and spatial distribution of maternal messenger RNA during oogenesis of an insect, Oncopeltus fasciatus. Journal of Cell Science. 39: 63-76. PMID 528591  1
1978 Jeffery WR, Capco DG. Differential accumulation and localization of maternal poly(A)-containing RNA during early development of the ascidian, Styela. Developmental Biology. 67: 152-66. PMID 720751 DOI: 10.1016/0012-1606(78)90306-8  1
1978 Capco DG, Jeffery WR. Differential distribution of poly(A)-containing RNA in the embryonic cells of Oncopeltus fasciatus. Analysis by in situ hybridization with a [3H]poly(U) probe. Developmental Biology. 67: 137-51. PMID 720750 DOI: 10.1016/0012-1606(78)90305-6  1
1978 Adams DS, Jeffery WR. Poly(adenylic acid) degradation by two distinct processes in the cytoplasmic RNA of Physarum polycephalum. Biochemistry. 17: 4519-24. PMID 718854 DOI: 10.1021/Bi00614A025  1
1975 Jeffery WR, Brawerman G. Association of the polyadenylate segment of messenger RNA with other polynucleotide sequences in mouse sarcoma 180 polyribosomes. Biochemistry. 14: 3445-51. PMID 1148210 DOI: 10.1021/Bi00686A024  1
1974 Jeffery WR, Rusch HP. Induction of somatic fusion and heterokaryosis in two incompatible strains of Physarum polycephalum. Developmental Biology. 39: 331-5. PMID 4859361 DOI: 10.1016/S0012-1606(74)80036-9  1
1974 Jeffery WR, Brawerman G. Characterization of the steady-state population of messenger RNA and its poly(adenylic acid) segment in mammalian cells. Biochemistry. 13: 4633-7. PMID 4425653 DOI: 10.1021/Bi00719A026  1
1973 Jeffery WR, Frankel J, DeBault LE, Jenkins LM. Analysis of the schedule of DNA replication in heat-synchronized Tetrahymena. The Journal of Cell Biology. 59: 1-11. PMID 4201707 DOI: 10.1083/Jcb.59.1.1  0.6
1970 Jeffery WR, Stuart KD, Frankel J. The relationship between deoxyribonucleic acid replication and cell division in heat-synchronized tetrahymena. The Journal of Cell Biology. 46: 533-43. PMID 5527238 DOI: 10.1083/Jcb.46.3.533  1
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