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Alex Keene, Ph.D. - Publications

Affiliations: 
2021- Biology Texas A & M University, College Station, TX, United States 
Area:
Evolution, genetics, biology, behavior
Website:
https://www.alexckeene.com/
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27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Warren WC, Rice ES, Maggs X, Roback E, Keene A, Martin F, Ogeh D, Haggerty L, Carroll RA, McGaugh S, Rohner N. Astyanax mexicanus surface and cavefish chromosome-scale assemblies for trait variation discovery. Biorxiv : the Preprint Server For Biology. PMID 38014157 DOI: 10.1101/2023.11.16.567450  0.537
2023 Moran RL, Richards EJ, Ornelas-García CP, Gross JB, Donny A, Wiese J, Keene AC, Kowalko JE, Rohner N, McGaugh SE. Selection-driven trait loss in independently evolved cavefish populations. Nature Communications. 14: 2557. PMID 37137902 DOI: 10.1038/s41467-023-37909-8  0.508
2022 Perry A, McGaugh SE, Keene AC, Blackmon H. CaveCrawler: An interactive analysis suite for cavefish bioinformatics. G3 (Bethesda, Md.). PMID 35708643 DOI: 10.1093/g3journal/jkac132  0.679
2022 Moran RL, Jaggard JB, Roback EY, Kenzior A, Rohner N, Kowalko JE, Ornelas-García CP, McGaugh SE, Keene AC. Hybridization underlies localized trait evolution in cavefish. Iscience. 25: 103778. PMID 35146393 DOI: 10.1016/j.isci.2022.103778  0.558
2021 O'Gorman M, Thakur S, Imrie G, Moran RL, Choy S, Sifuentes-Romero I, Bilandžija H, Renner KJ, Duboué E, Rohner N, McGaugh SE, Keene AC, Kowalko JE. Pleiotropic function of the oca2 gene underlies the evolution of sleep loss and albinism in cavefish. Current Biology : Cb. PMID 34293332 DOI: 10.1016/j.cub.2021.06.077  0.547
2021 Mack KL, Jaggard JB, Persons JL, Roback EY, Passow CN, Stanhope BA, Ferrufino E, Tsuchiya D, Smith SE, Slaughter BD, Kowalko J, Rohner N, Keene AC, McGaugh SE. Repeated evolution of circadian clock dysregulation in cavefish populations. Plos Genetics. 17: e1009642. PMID 34252077 DOI: 10.1371/journal.pgen.1009642  0.534
2021 Warren WC, Boggs TE, Borowsky R, Carlson BM, Ferrufino E, Gross JB, Hillier L, Hu Z, Keene AC, Kenzior A, Kowalko JE, Tomlinson C, Kremitzki M, Lemieux ME, Graves-Lindsay T, et al. A chromosome-level genome of Astyanax mexicanus surface fish for comparing population-specific genetic differences contributing to trait evolution. Nature Communications. 12: 1447. PMID 33664263 DOI: 10.1038/s41467-021-21733-z  0.551
2020 McGaugh SE, Kowalko JE, Duboué E, Lewis P, Franz-Odendaal TA, Rohner N, Gross JB, Keene AC. Dark world rises: The emergence of cavefish as a model for the study of evolution, development, behavior, and disease. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 32638529 DOI: 10.1002/Jez.B.22978  0.527
2020 McGaugh SE, Passow CN, Jaggard JB, Stahl BA, Keene AC. Unique transcriptional signatures of sleep loss across independently evolved cavefish populations. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 32351033 DOI: 10.1002/jez.b.22949  0.515
2019 Loomis C, Peuß R, Jaggard JB, Wang Y, McKinney SA, Raftopoulos SC, Raftopoulos A, Whu D, Green M, McGaugh SE, Rohner N, Keene AC, Duboue ER. An Adult Brain Atlas Reveals Broad Neuroanatomical Changes in Independently Evolved Populations of Mexican Cavefish. Frontiers in Neuroanatomy. 13: 88. PMID 31636546 DOI: 10.3389/Fnana.2019.00088  0.51
2019 Stahl BA, Jaggard JB, Chin JSR, Kowalko JE, Keene AC, Duboué ER. Manipulation of Gene Function in Mexican Cavefish. Journal of Visualized Experiments : Jove. PMID 31058898 DOI: 10.3791/59093  0.308
2019 Stahl BA, Peuß R, McDole B, Kenzior A, Jaggard JB, Gaudenz K, Krishnan J, McGaugh SE, Duboue ER, Keene AC, Rohner N. Stable transgenesis in Astyanax mexicanus using the Tol2 transposase system. Developmental Dynamics : An Official Publication of the American Association of Anatomists. PMID 30938001 DOI: 10.1002/Dvdy.32  0.518
2018 Passow CN, Kono TJY, Stahl BA, Jaggard JB, Keene AC, McGaugh SE. Nonrandom RNAseq gene expression associated with RNAlater and flash freezing storage methods. Molecular Ecology Resources. PMID 30447171 DOI: 10.1111/1755-0998.12965  0.474
2018 Herman A, Brandvain Y, Weagley J, Jeffery WR, Keene AC, Kono TJY, Bilandžija H, Borowsky R, Espinasa L, O'Quin K, Ornelas-García CP, Yoshizawa M, Carlson B, Maldonado E, Gross JB, et al. The role of gene flow in rapid and repeated evolution of cave related traits in Mexican tetra, Astyanax mexicanus. Molecular Ecology. PMID 30252986 DOI: 10.1111/Mec.14877  0.533
2016 Masek P, Keene AC. Gustatory processing and taste memory in Drosophila. Journal of Neurogenetics. 30: 112-21. PMID 27328844 DOI: 10.1080/01677063.2016.1185104  0.304
2015 Masek P, Worden K, Aso Y, Rubin GM, Keene AC. A dopamine-modulated neural circuit regulating aversive taste memory in Drosophila. Current Biology : Cb. 25: 1535-41. PMID 25981787 DOI: 10.1016/J.Cub.2015.04.027  0.35
2014 McGaugh SE, Gross JB, Aken B, Blin M, Borowsky R, Chalopin D, Hinaux H, Jeffery WR, Keene A, Ma L, Minx P, Murphy D, O'Quin KE, Rétaux S, Rohner N, et al. The cavefish genome reveals candidate genes for eye loss. Nature Communications. 5: 5307. PMID 25329095 DOI: 10.1038/Ncomms6307  0.55
2012 Masek P, Keene AC. Dopamine: on the threshold of sleep. Current Biology : Cb. 22: R949-51. PMID 23174295 DOI: 10.1016/j.cub.2012.09.007  0.302
2012 Keene AC, Masek P. Optogenetic induction of aversive taste memory. Neuroscience. 222: 173-80. PMID 22820051 DOI: 10.1016/j.neuroscience.2012.07.028  0.314
2011 Keene AC, Mazzoni EO, Zhen J, Younger MA, Yamaguchi S, Blau J, Desplan C, Sprecher SG. Distinct visual pathways mediate Drosophila larval light avoidance and circadian clock entrainment. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 31: 6527-34. PMID 21525293 DOI: 10.1523/Jneurosci.6165-10.2011  0.546
2010 Keene AC, Duboué ER, McDonald DM, Dus M, Suh GS, Waddell S, Blau J. Clock and cycle limit starvation-induced sleep loss in Drosophila. Current Biology : Cb. 20: 1209-15. PMID 20541409 DOI: 10.1016/J.Cub.2010.05.029  0.627
2007 Keene AC, Waddell S. Drosophila olfactory memory: single genes to complex neural circuits. Nature Reviews. Neuroscience. 8: 341-54. PMID 17453015 DOI: 10.1038/nrn2098  0.581
2007 Krashes MJ, Keene AC, Leung B, Armstrong JD, Waddell S. Sequential use of mushroom body neuron subsets during drosophila odor memory processing. Neuron. 53: 103-15. PMID 17196534 DOI: 10.1016/j.neuron.2006.11.021  0.58
2006 Keene AC, Krashes MJ, Leung B, Bernard JA, Waddell S. Drosophila dorsal paired medial neurons provide a general mechanism for memory consolidation. Current Biology : Cb. 16: 1524-30. PMID 16890528 DOI: 10.1016/j.cub.2006.06.022  0.58
2005 Yu D, Keene AC, Srivatsan A, Waddell S, Davis RL. Drosophila DPM neurons form a delayed and branch-specific memory trace after olfactory classical conditioning. Cell. 123: 945-57. PMID 16325586 DOI: 10.1016/J.Cell.2005.09.037  0.585
2005 Keene AC, Waddell S. Drosophila memory: dopamine signals punishment? Current Biology : Cb. 15: R932-4. PMID 16303554 DOI: 10.1016/j.cub.2005.10.058  0.539
2004 Keene AC, Stratmann M, Keller A, Perrat PN, Vosshall LB, Waddell S. Diverse odor-conditioned memories require uniquely timed dorsal paired medial neuron output. Neuron. 44: 521-33. PMID 15504331 DOI: 10.1016/j.neuron.2004.10.006  0.664
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