Bing Yang - Publications

Affiliations: 
University of California, San Francisco, San Francisco, CA 
Area:
Chemical Biology; Proteomics

40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Shu X, Asghar S, Yang F, Li ST, Wu H, Yang B. Uncover New Reactivity of Genetically Encoded Alkyl Bromide Non-Canonical Amino Acids. Frontiers in Chemistry. 10: 815991. PMID 35252115 DOI: 10.3389/fchem.2022.815991  0.408
2021 Tian H, Yang J, Guo AD, Ran Y, Yang YZ, Yang B, Huang R, Liu H, Chen XH. Genetically Encoded Benzoyllysines Serve as Versatile Probes for Interrogating Histone Benzoylation and Interactions in Living Cells. Acs Chemical Biology. PMID 34618427 DOI: 10.1021/acschembio.1c00614  0.576
2021 Liu C, Wu T, Shu X, Li ST, Wang DR, Wang N, Zhou R, Yang H, Jiang H, Hendriks IA, Gong P, Zhang L, Nielsen ML, Li K, Wang L, ... Yang B, et al. Identification of Protein Direct Interactome with Genetic Code Expansion and Search Engine OpenUaa. Advanced Biology. 5: e2000308. PMID 33729691 DOI: 10.1002/adbi.202000308  0.754
2020 Li S, Yang B, Kobayashi T, Yu B, Liu J, Wang L. Genetically encoding thyronine for fluorescent detection of peroxynitrite. Bioorganic & Medicinal Chemistry. 28: 115665. PMID 32828428 DOI: 10.1016/J.Bmc.2020.115665  0.662
2019 Liu J, Li S, Aslam NA, Zheng F, Yang B, Cheng R, Wang N, Rozovsky S, Wang PG, Wang Q, Wang L. Genetically Encoding Photocaged Quinone Methide to Multitarget Protein Residues Covalently in Vivo. Journal of the American Chemical Society. PMID 31184146 DOI: 10.1021/Jacs.9B01738  0.767
2019 Yang B, Wang N, Schnier PD, Zheng F, Zhu H, Polizzi NF, Ittuveetil A, Saikam V, DeGrado W, Wang Q, Wang PG, Wang L. Genetically Introducing Biochemically Reactive Amino Acids Dehydroalanine and Dehydrobutyrine in Proteins. Journal of the American Chemical Society. PMID 31038942 DOI: 10.1021/Jacs.9B02611  0.752
2018 Dai T, Wu L, Wang S, Wang J, Xie F, Zhang Z, Fang X, Li J, Fang P, Li F, Jin K, Dai J, Yang B, Zhou F, van Dam H, et al. FAF1 Regulates Antiviral Immunity by Inhibiting MAVS but Is Antagonized by Phosphorylation upon Viral Infection. Cell Host & Microbe. PMID 30472208 DOI: 10.1016/J.Chom.2018.10.006  0.304
2018 Yang B, Wu H, Schnier PD, Liu Y, Liu J, Wang N, DeGrado WF, Wang L. Proximity-enhanced SuFEx chemical cross-linker for specific and multitargeting cross-linking mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. PMID 30322930 DOI: 10.1073/Pnas.1813574115  0.746
2018 Fu C, Kobayashi T, Wang N, Hoppmann C, Yang B, Irannejad R, Wang L. Genetically Encoding Quinoline Reverses Chromophore Charge and Enables Fluorescent Protein Brightening in Acidic Vesicles. Journal of the American Chemical Society. PMID 30132658 DOI: 10.1021/Jacs.8B05814  0.734
2018 Wang N, Yang B, Fu C, Zhu H, Zheng F, Kobayashi T, Liu J, Li S, Ma C, Wang PG, Wang Q, Wang L. Genetically encoding fluorosulfate-L-tyrosine to react with lysine, histidine and tyrosine via SuFEx in proteins in vivo. Journal of the American Chemical Society. PMID 29601199 DOI: 10.1021/Jacs.8B01087  0.801
2018 Zuzow N, Ghosh A, Leonard M, Liao J, Yang B, Bennett EJ. Mapping the mammalian ribosome quality control complex interactome using proximity labeling approaches. Molecular Biology of the Cell. PMID 29540532 DOI: 10.1091/Mbc.E17-12-0714  0.414
2017 Yang B, Tang S, Ma C, Li ST, Shao GC, Dang B, DeGrado WF, Dong MQ, Wang PG, Ding S, Wang L. Spontaneous and specific chemical cross-linking in live cells to capture and identify protein interactions. Nature Communications. 8: 2240. PMID 29269770 DOI: 10.1038/S41467-017-02409-Z  0.644
2017 Li X, Han H, Zhou MT, Yang B, Ta AP, Li N, Chen J, Wang W. Proteomic Analysis of the Human Tankyrase Protein Interaction Network Reveals Its Role in Pexophagy. Cell Reports. 20: 737-749. PMID 28723574 DOI: 10.1016/J.Celrep.2017.06.077  0.301
2017 Hoppmann C, Wong A, Yang B, Li S, Hunter T, Shokat KM, Wang L. Site-specific incorporation of phosphotyrosine using an expanded genetic code. Nature Chemical Biology. PMID 28604697 DOI: 10.1038/Nchembio.2406  0.74
2016 Kobayashi T, Hoppmann C, Yang B, Wang L. Using Protein-Confined Proximity to Determine Chemical Reactivity. Journal of the American Chemical Society. PMID 27797495 DOI: 10.1021/Jacs.6B08656  0.761
2016 Ren H, Yang B, Ma C, Hu Y, Wang PG, Wang L. Cysteine Sulfoxidation Increases the Photostability of Red Fluorescent Proteins. Acs Chemical Biology. PMID 27603966 DOI: 10.1021/Acschembio.6B00579  0.662
2016 Gendron JM, Webb K, Yang B, Rising L, Zuzow N, Bennett EJ. Using the ubiquitin-modified proteome to monitor distinct and spatially restricted protein homeostasis dysfunction. Molecular & Cellular Proteomics : McP. PMID 27185884 DOI: 10.1074/Mcp.M116.058420  0.451
2016 Tan D, Li Q, Zhang MJ, Liu C, Ma C, Zhang P, Ding YH, Fan SB, Tao L, Yang B, Li X, Ma S, Liu J, Feng B, Liu X, et al. Trifunctional cross-linker for mapping protein-protein interaction networks and comparing protein conformational states. Elife. 5. PMID 26952210 DOI: 10.7554/Elife.12509  0.777
2016 Tan D, Li Q, Zhang M, Liu C, Ma C, Zhang P, Ding Y, Fan S, Tao L, Yang B, Li X, Ma S, Liu J, Feng B, Liu X, et al. Author response: Trifunctional cross-linker for mapping protein-protein interaction networks and comparing protein conformational states Elife. DOI: 10.7554/Elife.12509.104  0.749
2015 Chi H, He K, Yang B, Chen Z, Sun RX, Fan SB, Zhang K, Liu C, Yuan ZF, Wang QH, Liu SQ, Dong MQ, He SM. Reprint of "pFind-Alioth: A novel unrestricted database search algorithm to improve the interpretation of high-resolution MS/MS data". Journal of Proteomics. PMID 26232248 DOI: 10.1016/j.jprot.2015.07.019  0.411
2015 Higgins R, Gendron JM, Rising L, Mak R, Webb K, Kaiser SE, Zuzow N, Riviere P, Yang B, Fenech E, Tang X, Lindsay SA, Christianson JC, Hampton RY, Wasserman SA, et al. The Unfolded Protein Response Triggers Site-Specific Regulatory Ubiquitylation of 40S Ribosomal Proteins. Molecular Cell. 59: 35-49. PMID 26051182 DOI: 10.1016/J.Molcel.2015.04.026  0.413
2015 Chi H, He K, Yang B, Chen Z, Sun RX, Fan SB, Zhang K, Liu C, Yuan ZF, Wang QH, Liu SQ, Dong MQ, He SM. pFind-Alioth: A novel unrestricted database search algorithm to improve the interpretation of high-resolution MS/MS data. Journal of Proteomics. 125: 89-97. PMID 25979774 DOI: 10.1016/J.Jprot.2015.05.009  0.475
2015 Lu S, Fan SB, Yang B, Li YX, Meng JM, Wu L, Li P, Zhang K, Zhang MJ, Fu Y, Luo J, Sun RX, He SM, Dong MQ. Mapping native disulfide bonds at a proteome scale. Nature Methods. 12: 329-31. PMID 25664544 DOI: 10.1038/Nmeth.3283  0.532
2014 Hendriks IA, D'Souza RC, Yang B, Verlaan-de Vries M, Mann M, Vertegaal AC. Uncovering global SUMOylation signaling networks in a site-specific manner. Nature Structural & Molecular Biology. 21: 927-36. PMID 25218447 DOI: 10.1038/Nsmb.2890  0.341
2014 Coffman K, Yang B, Lu J, Tetlow AL, Pelliccio E, Lu S, Guo DC, Tang C, Dong MQ, Tamanoi F. Characterization of the Raptor/4E-BP1 interaction by chemical cross-linking coupled with mass spectrometry analysis. The Journal of Biological Chemistry. 289: 4723-34. PMID 24403073 DOI: 10.1074/Jbc.M113.482067  0.519
2013 Sun LL, Li M, Suo F, Liu XM, Shen EZ, Yang B, Dong MQ, He WZ, Du LL. Global analysis of fission yeast mating genes reveals new autophagy factors. Plos Genetics. 9: e1003715. PMID 23950735 DOI: 10.1371/Journal.Pgen.1003715  0.535
2013 Chi H, Chen H, He K, Wu L, Yang B, Sun RX, Liu J, Zeng WF, Song CQ, He SM, Dong MQ. pNovo+: de novo peptide sequencing using complementary HCD and ETD tandem mass spectra. Journal of Proteome Research. 12: 615-25. PMID 23272783 DOI: 10.1021/Pr3006843  0.485
2012 Qu M, Yang B, Tao L, Yates JR, Russell P, Dong MQ, Du LL. Phosphorylation-dependent interactions between Crb2 and Chk1 are essential for DNA damage checkpoint. Plos Genetics. 8: e1002817. PMID 22792081 DOI: 10.1371/Journal.Pgen.1002817  0.509
2012 Yang B, Wu YJ, Zhu M, Fan SB, Lin J, Zhang K, Li S, Chi H, Li YX, Chen HF, Luo SK, Ding YH, Wang LH, Hao Z, Xiu LY, et al. Identification of cross-linked peptides from complex samples. Nature Methods. 9: 904-6. PMID 22772728 DOI: 10.1038/Nmeth.2099  0.761
2011 Li S, Duan J, Li D, Yang B, Dong M, Ye K. Reconstitution and structural analysis of the yeast box H/ACA RNA-guided pseudouridine synthase. Genes & Development. 25: 2409-21. PMID 22085967 DOI: 10.1101/Gad.175299.111  0.458
2010 Sun RX, Dong MQ, Song CQ, Chi H, Yang B, Xiu LY, Tao L, Jing ZY, Liu C, Wang LH, Fu Y, He SM. Improved peptide identification for proteomic analysis based on comprehensive characterization of electron transfer dissociation spectra. Journal of Proteome Research. 9: 6354-67. PMID 20883037 DOI: 10.1021/Pr100648R  0.498
2010 Chi H, Sun RX, Yang B, Song CQ, Wang LH, Liu C, Fu Y, Yuan ZF, Wang HP, He SM, Dong MQ. pNovo: de novo peptide sequencing and identification using HCD spectra. Journal of Proteome Research. 9: 2713-24. PMID 20329752 DOI: 10.1021/Pr100182K  0.479
2010 Chen M, Yang B, Ying W, He F, Qian X. Annotation of non-synonymous single polymorphisms in human liver proteome by mass spectrometry. Protein and Peptide Letters. 17: 277-86. PMID 19508201 DOI: 10.2174/092986610790780242  0.313
2010 Sun RX, Dong MQ, Chi H, Yang B, Xiu LY, Wang LH, Fu Y, He SM. ECD/ETD-based tandem mass spectrometry in proteomics Progress in Biochemistry and Biophysics. 37: 94-102. DOI: 10.3724/Sp.J.1206.2009.00352  0.467
2009 McLean MA, Rajfur Z, Chen Z, Humphrey D, Yang B, Sligar SG, Jacobson K. Mechanism of chromophore assisted laser inactivation employing fluorescent proteins. Analytical Chemistry. 81: 1755-61. PMID 19199572 DOI: 10.1021/Ac801663Y  0.345
2008 Sui S, Wang J, Yang B, Song L, Zhang J, Chen M, Liu J, Lu Z, Cai Y, Chen S, Bi W, Zhu Y, He F, Qian X. Phosphoproteome analysis of the human Chang liver cells using SCX and a complementary mass spectrometric strategy. Proteomics. 8: 2024-34. PMID 18491316 DOI: 10.1002/Pmic.200700896  0.339
2007 Liu J, Cai Y, Wang J, Zhou Q, Yang B, Lu Z, Jiao L, Zhang D, Sui S, Jiang Y, Ying W, Qian X. Phosphoproteome profile of human liver Chang's cell based on 2-DE with fluorescence staining and MALDI-TOF/TOF-MS. Electrophoresis. 28: 4348-58. PMID 17987627 DOI: 10.1002/Elps.200600696  0.427
2007 Chen M, Ying W, Song Y, Liu X, Yang B, Wu S, Jiang Y, Cai Y, He F, Qian X. Analysis of human liver proteome using replicate shotgun strategy. Proteomics. 7: 2479-88. PMID 17623305 DOI: 10.1002/Pmic.200600338  0.398
2006 Gong Y, Li X, Yang B, Ying W, Li D, Zhang Y, Dai S, Cai Y, Wang J, He F, Qian X. Different immunoaffinity fractionation strategies to characterize the human plasma proteome. Journal of Proteome Research. 5: 1379-87. PMID 16739989 DOI: 10.1021/Pr0600024  0.424
2005 Dai J, Wang J, Zhang Y, Lu Z, Yang B, Li X, Cai Y, Qian X. Enrichment and identification of cysteine-containing peptides from tryptic digests of performic oxidized proteins by strong cation exchange LC and MALDI-TOF/TOF MS. Analytical Chemistry. 77: 7594-604. PMID 16316166 DOI: 10.1021/Ac0506276  0.33
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