| Year |
Citation |
Score |
| 2024 |
Liu DD, Ding W, Cheng JT, Wei Q, Lin Y, Zhu TY, Tian J, Sun K, Zhang L, Lu P, Yang F, Liu C, Tang S, Yang B. Characterize direct protein interactions with enrichable, cleavable and latent bioreactive unnatural amino acids. Nature Communications. 15: 5221. PMID 38890329 DOI: 10.1038/s41467-024-49517-1 |
0.761 |
|
| 2023 |
Liao QQ, Shu X, Sun W, Mandapaka H, Xie F, Zhang Z, Dai T, Wang S, Zhao J, Jiang H, Zhang L, Lin J, Li SW, Coin I, Yang F, ... ... Yang B, et al. Capturing Protein-Protein Interactions with Acidic Amino Acids Reactive Cross-Linkers. Small (Weinheim An Der Bergstrasse, Germany). e2308383. PMID 38073323 DOI: 10.1002/smll.202308383 |
0.758 |
|
| 2023 |
Guo M, Zhao K, Guo L, Zhou R, He Q, Lu K, Li T, Liu D, Chen J, Tang J, Fu X, Zhou J, Zheng B, Mann SI, Zhang Y, ... ... Yang B, et al. Copper assisted sequence-specific chemical protein conjugation at a single backbone amide. Nature Communications. 14: 8063. PMID 38052794 DOI: 10.1038/s41467-023-43753-7 |
0.342 |
|
| 2023 |
Galletta BJ, Varadarajan R, Fagerstrom CJ, Yang B, Haase KP, McJunkin K, Rusan NM. The E3 Ligase Poe Promotes Pericentrin Degradation. Molecular Biology of the Cell. mbcE22110534. PMID 37342879 DOI: 10.1091/mbc.E22-11-0534 |
0.328 |
|
| 2023 |
Liu J, Yang B, Wang L. Residue selective crosslinking of proteins through photoactivatable or proximity-enabled reactivity. Current Opinion in Chemical Biology. 74: 102285. PMID 36913752 DOI: 10.1016/j.cbpa.2023.102285 |
0.523 |
|
| 2023 |
Wu T, Li ST, Ran Y, Lin Y, Liu L, Zhang X, Zhou L, Zhang L, Wu D, Yang B, Tang S. Mapping protein direct interactome of oxidoreductases with small molecular chemical cross-linkers in live cells. Redox Biology. 61: 102642. PMID 36863169 DOI: 10.1016/j.redox.2023.102642 |
0.733 |
|
| 2023 |
Chen H, Guo Z, Wang Z, Yang B, Chen X, Wen L, Yang Q, Kan J. Structural and physicochemical properties of the different ultrasound frequency modified Qingke protein. Ultrasonics Sonochemistry. 94: 106338. PMID 36827902 DOI: 10.1016/j.ultsonch.2023.106338 |
0.309 |
|
| 2023 |
Shu X, Liao QQ, Li ST, Liu L, Zhang X, Zhou L, Zhang L, Coin I, Wang L, Wu H, Yang B. Detecting Active Deconjugating Enzymes with Genetically Encoded Activity-Based Ubiquitin and Ubiquitin-like Protein Probes. Analytical Chemistry. PMID 36595388 DOI: 10.1021/acs.analchem.2c03270 |
0.711 |
|
| 2022 |
Shu X, Asghar S, Yang F, Li ST, Wu H, Yang B. Uncover New Reactivity of Genetically Encoded Alkyl Bromide Non-Canonical Amino Acids. Frontiers in Chemistry. 10: 815991. PMID 35252115 DOI: 10.3389/fchem.2022.815991 |
0.42 |
|
| 2022 |
Carr AV, Frey BL, Scalf M, Cesnik AJ, Rolfs Z, Pike KA, Yang B, Keller MP, Jarrard DF, Shortreed MR, Smith LM. MetaNetwork Enhances Biological Insights from Quantitative Proteomics Differences by Combining Clustering and Enrichment Analyses. Journal of Proteome Research. PMID 35073098 DOI: 10.1021/acs.jproteome.1c00756 |
0.3 |
|
| 2021 |
Tian H, Yang J, Guo AD, Ran Y, Yang YZ, Yang B, Huang R, Liu H, Chen XH. Genetically Encoded Benzoyllysines Serve as Versatile Probes for Interrogating Histone Benzoylation and Interactions in Living Cells. Acs Chemical Biology. PMID 34618427 DOI: 10.1021/acschembio.1c00614 |
0.586 |
|
| 2021 |
Liu C, Wu T, Shu X, Li ST, Wang DR, Wang N, Zhou R, Yang H, Jiang H, Hendriks IA, Gong P, Zhang L, Nielsen ML, Li K, Wang L, ... Yang B, et al. Identification of Protein Direct Interactome with Genetic Code Expansion and Search Engine OpenUaa. Advanced Biology. 5: e2000308. PMID 33729691 DOI: 10.1002/adbi.202000308 |
0.749 |
|
| 2020 |
Li S, Yang B, Kobayashi T, Yu B, Liu J, Wang L. Genetically encoding thyronine for fluorescent detection of peroxynitrite. Bioorganic & Medicinal Chemistry. 28: 115665. PMID 32828428 DOI: 10.1016/J.Bmc.2020.115665 |
0.669 |
|
| 2019 |
Liu J, Li S, Aslam NA, Zheng F, Yang B, Cheng R, Wang N, Rozovsky S, Wang PG, Wang Q, Wang L. Genetically Encoding Photocaged Quinone Methide to Multitarget Protein Residues Covalently in Vivo. Journal of the American Chemical Society. PMID 31184146 DOI: 10.1021/Jacs.9B01738 |
0.766 |
|
| 2019 |
Yang B, Wang N, Schnier PD, Zheng F, Zhu H, Polizzi NF, Ittuveetil A, Saikam V, DeGrado W, Wang Q, Wang PG, Wang L. Genetically Introducing Biochemically Reactive Amino Acids Dehydroalanine and Dehydrobutyrine in Proteins. Journal of the American Chemical Society. PMID 31038942 DOI: 10.1021/Jacs.9B02611 |
0.744 |
|
| 2018 |
Dai T, Wu L, Wang S, Wang J, Xie F, Zhang Z, Fang X, Li J, Fang P, Li F, Jin K, Dai J, Yang B, Zhou F, van Dam H, et al. FAF1 Regulates Antiviral Immunity by Inhibiting MAVS but Is Antagonized by Phosphorylation upon Viral Infection. Cell Host & Microbe. PMID 30472208 DOI: 10.1016/J.Chom.2018.10.006 |
0.304 |
|
| 2018 |
Yang B, Wu H, Schnier PD, Liu Y, Liu J, Wang N, DeGrado WF, Wang L. Proximity-enhanced SuFEx chemical cross-linker for specific and multitargeting cross-linking mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. PMID 30322930 DOI: 10.1073/Pnas.1813574115 |
0.748 |
|
| 2018 |
Fu C, Kobayashi T, Wang N, Hoppmann C, Yang B, Irannejad R, Wang L. Genetically Encoding Quinoline Reverses Chromophore Charge and Enables Fluorescent Protein Brightening in Acidic Vesicles. Journal of the American Chemical Society. PMID 30132658 DOI: 10.1021/Jacs.8B05814 |
0.742 |
|
| 2018 |
Wang N, Yang B, Fu C, Zhu H, Zheng F, Kobayashi T, Liu J, Li S, Ma C, Wang PG, Wang Q, Wang L. Genetically encoding fluorosulfate-L-tyrosine to react with lysine, histidine and tyrosine via SuFEx in proteins in vivo. Journal of the American Chemical Society. PMID 29601199 DOI: 10.1021/Jacs.8B01087 |
0.806 |
|
| 2018 |
Zuzow N, Ghosh A, Leonard M, Liao J, Yang B, Bennett EJ. Mapping the mammalian ribosome quality control complex interactome using proximity labeling approaches. Molecular Biology of the Cell. PMID 29540532 DOI: 10.1091/Mbc.E17-12-0714 |
0.447 |
|
| 2017 |
Yang B, Tang S, Ma C, Li ST, Shao GC, Dang B, DeGrado WF, Dong MQ, Wang PG, Ding S, Wang L. Spontaneous and specific chemical cross-linking in live cells to capture and identify protein interactions. Nature Communications. 8: 2240. PMID 29269770 DOI: 10.1038/S41467-017-02409-Z |
0.804 |
|
| 2017 |
Li X, Han H, Zhou MT, Yang B, Ta AP, Li N, Chen J, Wang W. Proteomic Analysis of the Human Tankyrase Protein Interaction Network Reveals Its Role in Pexophagy. Cell Reports. 20: 737-749. PMID 28723574 DOI: 10.1016/J.Celrep.2017.06.077 |
0.318 |
|
| 2017 |
Hoppmann C, Wong A, Yang B, Li S, Hunter T, Shokat KM, Wang L. Site-specific incorporation of phosphotyrosine using an expanded genetic code. Nature Chemical Biology. PMID 28604697 DOI: 10.1038/Nchembio.2406 |
0.744 |
|
| 2016 |
Kobayashi T, Hoppmann C, Yang B, Wang L. Using Protein-Confined Proximity to Determine Chemical Reactivity. Journal of the American Chemical Society. PMID 27797495 DOI: 10.1021/Jacs.6B08656 |
0.766 |
|
| 2016 |
Ren H, Yang B, Ma C, Hu Y, Wang PG, Wang L. Cysteine Sulfoxidation Increases the Photostability of Red Fluorescent Proteins. Acs Chemical Biology. PMID 27603966 DOI: 10.1021/Acschembio.6B00579 |
0.653 |
|
| 2016 |
Gendron JM, Webb K, Yang B, Rising L, Zuzow N, Bennett EJ. Using the ubiquitin-modified proteome to monitor distinct and spatially restricted protein homeostasis dysfunction. Molecular & Cellular Proteomics : McP. PMID 27185884 DOI: 10.1074/Mcp.M116.058420 |
0.455 |
|
| 2016 |
Tan D, Li Q, Zhang MJ, Liu C, Ma C, Zhang P, Ding YH, Fan SB, Tao L, Yang B, Li X, Ma S, Liu J, Feng B, Liu X, et al. Trifunctional cross-linker for mapping protein-protein interaction networks and comparing protein conformational states. Elife. 5. PMID 26952210 DOI: 10.7554/Elife.12509 |
0.788 |
|
| 2016 |
Tan D, Li Q, Zhang M, Liu C, Ma C, Zhang P, Ding Y, Fan S, Tao L, Yang B, Li X, Ma S, Liu J, Feng B, Liu X, et al. Author response: Trifunctional cross-linker for mapping protein-protein interaction networks and comparing protein conformational states Elife. DOI: 10.7554/Elife.12509.104 |
0.749 |
|
| 2015 |
Chi H, He K, Yang B, Chen Z, Sun RX, Fan SB, Zhang K, Liu C, Yuan ZF, Wang QH, Liu SQ, Dong MQ, He SM. Reprint of "pFind-Alioth: A novel unrestricted database search algorithm to improve the interpretation of high-resolution MS/MS data". Journal of Proteomics. PMID 26232248 DOI: 10.1016/j.jprot.2015.07.019 |
0.416 |
|
| 2015 |
Higgins R, Gendron JM, Rising L, Mak R, Webb K, Kaiser SE, Zuzow N, Riviere P, Yang B, Fenech E, Tang X, Lindsay SA, Christianson JC, Hampton RY, Wasserman SA, et al. The Unfolded Protein Response Triggers Site-Specific Regulatory Ubiquitylation of 40S Ribosomal Proteins. Molecular Cell. 59: 35-49. PMID 26051182 DOI: 10.1016/J.Molcel.2015.04.026 |
0.418 |
|
| 2015 |
Chi H, He K, Yang B, Chen Z, Sun RX, Fan SB, Zhang K, Liu C, Yuan ZF, Wang QH, Liu SQ, Dong MQ, He SM. pFind-Alioth: A novel unrestricted database search algorithm to improve the interpretation of high-resolution MS/MS data. Journal of Proteomics. 125: 89-97. PMID 25979774 DOI: 10.1016/J.Jprot.2015.05.009 |
0.479 |
|
| 2015 |
Lu S, Fan SB, Yang B, Li YX, Meng JM, Wu L, Li P, Zhang K, Zhang MJ, Fu Y, Luo J, Sun RX, He SM, Dong MQ. Mapping native disulfide bonds at a proteome scale. Nature Methods. 12: 329-31. PMID 25664544 DOI: 10.1038/Nmeth.3283 |
0.544 |
|
| 2014 |
Hendriks IA, D'Souza RC, Yang B, Verlaan-de Vries M, Mann M, Vertegaal AC. Uncovering global SUMOylation signaling networks in a site-specific manner. Nature Structural & Molecular Biology. 21: 927-36. PMID 25218447 DOI: 10.1038/Nsmb.2890 |
0.35 |
|
| 2014 |
Coffman K, Yang B, Lu J, Tetlow AL, Pelliccio E, Lu S, Guo DC, Tang C, Dong MQ, Tamanoi F. Characterization of the Raptor/4E-BP1 interaction by chemical cross-linking coupled with mass spectrometry analysis. The Journal of Biological Chemistry. 289: 4723-34. PMID 24403073 DOI: 10.1074/Jbc.M113.482067 |
0.538 |
|
| 2013 |
Sun LL, Li M, Suo F, Liu XM, Shen EZ, Yang B, Dong MQ, He WZ, Du LL. Global analysis of fission yeast mating genes reveals new autophagy factors. Plos Genetics. 9: e1003715. PMID 23950735 DOI: 10.1371/Journal.Pgen.1003715 |
0.541 |
|
| 2013 |
Chi H, Chen H, He K, Wu L, Yang B, Sun RX, Liu J, Zeng WF, Song CQ, He SM, Dong MQ. pNovo+: de novo peptide sequencing using complementary HCD and ETD tandem mass spectra. Journal of Proteome Research. 12: 615-25. PMID 23272783 DOI: 10.1021/Pr3006843 |
0.488 |
|
| 2012 |
Qu M, Yang B, Tao L, Yates JR, Russell P, Dong MQ, Du LL. Phosphorylation-dependent interactions between Crb2 and Chk1 are essential for DNA damage checkpoint. Plos Genetics. 8: e1002817. PMID 22792081 DOI: 10.1371/Journal.Pgen.1002817 |
0.511 |
|
| 2012 |
Yang B, Wu YJ, Zhu M, Fan SB, Lin J, Zhang K, Li S, Chi H, Li YX, Chen HF, Luo SK, Ding YH, Wang LH, Hao Z, Xiu LY, et al. Identification of cross-linked peptides from complex samples. Nature Methods. 9: 904-6. PMID 22772728 DOI: 10.1038/Nmeth.2099 |
0.769 |
|
| 2011 |
Li S, Duan J, Li D, Yang B, Dong M, Ye K. Reconstitution and structural analysis of the yeast box H/ACA RNA-guided pseudouridine synthase. Genes & Development. 25: 2409-21. PMID 22085967 DOI: 10.1101/Gad.175299.111 |
0.458 |
|
| 2010 |
Sun RX, Dong MQ, Song CQ, Chi H, Yang B, Xiu LY, Tao L, Jing ZY, Liu C, Wang LH, Fu Y, He SM. Improved peptide identification for proteomic analysis based on comprehensive characterization of electron transfer dissociation spectra. Journal of Proteome Research. 9: 6354-67. PMID 20883037 DOI: 10.1021/Pr100648R |
0.497 |
|
| 2010 |
Chi H, Sun RX, Yang B, Song CQ, Wang LH, Liu C, Fu Y, Yuan ZF, Wang HP, He SM, Dong MQ. pNovo: de novo peptide sequencing and identification using HCD spectra. Journal of Proteome Research. 9: 2713-24. PMID 20329752 DOI: 10.1021/Pr100182K |
0.481 |
|
| 2010 |
Chen M, Yang B, Ying W, He F, Qian X. Annotation of non-synonymous single polymorphisms in human liver proteome by mass spectrometry. Protein and Peptide Letters. 17: 277-86. PMID 19508201 DOI: 10.2174/092986610790780242 |
0.317 |
|
| 2010 |
Sun RX, Dong MQ, Chi H, Yang B, Xiu LY, Wang LH, Fu Y, He SM. ECD/ETD-based tandem mass spectrometry in proteomics Progress in Biochemistry and Biophysics. 37: 94-102. DOI: 10.3724/Sp.J.1206.2009.00352 |
0.477 |
|
| 2009 |
McLean MA, Rajfur Z, Chen Z, Humphrey D, Yang B, Sligar SG, Jacobson K. Mechanism of chromophore assisted laser inactivation employing fluorescent proteins. Analytical Chemistry. 81: 1755-61. PMID 19199572 DOI: 10.1021/Ac801663Y |
0.344 |
|
| 2008 |
Sui S, Wang J, Yang B, Song L, Zhang J, Chen M, Liu J, Lu Z, Cai Y, Chen S, Bi W, Zhu Y, He F, Qian X. Phosphoproteome analysis of the human Chang liver cells using SCX and a complementary mass spectrometric strategy. Proteomics. 8: 2024-34. PMID 18491316 DOI: 10.1002/Pmic.200700896 |
0.347 |
|
| 2007 |
Liu J, Cai Y, Wang J, Zhou Q, Yang B, Lu Z, Jiao L, Zhang D, Sui S, Jiang Y, Ying W, Qian X. Phosphoproteome profile of human liver Chang's cell based on 2-DE with fluorescence staining and MALDI-TOF/TOF-MS. Electrophoresis. 28: 4348-58. PMID 17987627 DOI: 10.1002/Elps.200600696 |
0.433 |
|
| 2007 |
Chen M, Ying W, Song Y, Liu X, Yang B, Wu S, Jiang Y, Cai Y, He F, Qian X. Analysis of human liver proteome using replicate shotgun strategy. Proteomics. 7: 2479-88. PMID 17623305 DOI: 10.1002/Pmic.200600338 |
0.41 |
|
| 2006 |
Gong Y, Li X, Yang B, Ying W, Li D, Zhang Y, Dai S, Cai Y, Wang J, He F, Qian X. Different immunoaffinity fractionation strategies to characterize the human plasma proteome. Journal of Proteome Research. 5: 1379-87. PMID 16739989 DOI: 10.1021/Pr0600024 |
0.431 |
|
| 2005 |
Dai J, Wang J, Zhang Y, Lu Z, Yang B, Li X, Cai Y, Qian X. Enrichment and identification of cysteine-containing peptides from tryptic digests of performic oxidized proteins by strong cation exchange LC and MALDI-TOF/TOF MS. Analytical Chemistry. 77: 7594-604. PMID 16316166 DOI: 10.1021/Ac0506276 |
0.339 |
|
| Show low-probability matches. |