James D Stephenson - Publications

Affiliations: 
2014-2016 Exobiology Branch NASA Ames Research Center, Mountain View, CA, United States 

8/30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Laskowski RA, Stephenson JD, Sillitoe I, Orengo CA, Thornton JM. VarSite: disease variants and protein structure. Protein Science : a Publication of the Protein Society. PMID 31606900 DOI: 10.1002/Pro.3746  0.373
2019 Ilardo M, Bose R, Meringer M, Rasulev B, Grefenstette N, Stephenson J, Freeland S, Gillams RJ, Butch CJ, Cleaves HJ. Adaptive Properties of the Genetically Encoded Amino Acid Alphabet Are Inherited from Its Subsets. Scientific Reports. 9: 12468. PMID 31462646 DOI: 10.1038/S41598-019-47574-X  0.323
2019 Stephenson JD, Laskowski RA, Nightingale A, Hurles ME, Thornton JM. VarMap: a web tool for mapping genomic coordinates to protein sequence and structure and retrieving protein structural annotations. Bioinformatics (Oxford, England). PMID 31192369 DOI: 10.1093/Bioinformatics/Btz482  0.401
2016 Stephenson JD, Kenyon JC, Symmons MF, Lever AM. Characterizing 3D RNA structure by single molecule FRET. Methods (San Diego, Calif.). PMID 26853327 DOI: 10.1016/J.Ymeth.2016.02.004  0.467
2013 Stephenson JD, Hallis LJ, Nagashima K, Freeland SJ. Boron enrichment in martian clay. Plos One. 8: e64624. PMID 23762242 DOI: 10.1371/Journal.Pone.0064624  0.424
2013 Stephenson JD, Freeland SJ. Unearthing the root of amino acid similarity. Journal of Molecular Evolution. 77: 159-69. PMID 23743923 DOI: 10.1007/S00239-013-9565-0  0.309
2013 Stephenson JD, Li H, Kenyon JC, Symmons M, Klenerman D, Lever AM. Three-dimensional RNA structure of the major HIV-1 packaging signal region. Structure (London, England : 1993). 21: 951-62. PMID 23685210 DOI: 10.1016/J.Str.2013.04.008  0.449
2009 Stephenson J, Lever A. Secondary structure of the HIV‑1 genome Hiv Therapy. 3: 557-563. DOI: 10.2217/Hiv.09.44  0.466
Low-probability matches (unlikely to be authored by this person)
2022 Hasenahuer MA, Sanchis-Juan A, Laskowski RA, Baker JA, Stephenson JD, Orengo CA, Lucy Raymond F, Thornton JM. Mapping the Constrained Coding Regions in the human genome to their corresponding proteins. Journal of Molecular Biology. 167892. PMID 36410474 DOI: 10.1016/j.jmb.2022.167892  0.298
2018 Martin HC, Jones WD, McIntyre R, Sanchez-Andrade G, Sanderson M, Stephenson JD, Jones CP, Handsaker J, Gallone G, Bruntraeger M, McRae JF, Prigmore E, Short P, Niemi M, Kaplanis J, et al. Quantifying the contribution of recessive coding variation to developmental disorders. Science (New York, N.Y.). PMID 30409806 DOI: 10.1126/Science.Aar6731  0.261
2016 Stephenson JD, Popović M, Bristow TF, Ditzler MA. Evolution of ribozymes in the presence of a mineral surface. Rna (New York, N.Y.). PMID 27793980 DOI: 10.1261/Rna.057703.116  0.261
2023 Radford EJ, Tan HK, Andersson MHL, Stephenson JD, Gardner EJ, Ironfield H, Waters AJ, Gitterman D, Lindsay S, Abascal F, Martincorena I, Kolesnik-Taylor A, Ng-Cordell E, Firth HV, Baker K, et al. Saturation genome editing of DDX3X clarifies pathogenicity of germline and somatic variation. Nature Communications. 14: 7702. PMID 38057330 DOI: 10.1038/s41467-023-43041-4  0.204
2023 Thakur M, Buniello A, Brooksbank C, Gurwitz KT, Hall M, Hartley M, Hulcoop DG, Leach AR, Marques D, Martin M, Mithani A, McDonagh EM, Mutasa-Gottgens E, Ochoa D, Perez-Riverol Y, ... Stephenson J, et al. EMBL's European Bioinformatics Institute (EMBL-EBI) in 2023. Nucleic Acids Research. PMID 38015445 DOI: 10.1093/nar/gkad1088  0.154
2023 Stefanucci L, Collins JH, Sims MC, Barrio-Hernandez I, Sun L, Burren O, Perfetto L, Bender I, Callahan TJ, Fleming K, Guerrero JA, Hermjakob H, Martin MJ, Stephenson JD, Paneerselvam K, et al. The effects of pathogenic variants for inherited hemostasis disorders in 140,214 UK Biobank participants. Blood. PMID 37647632 DOI: 10.1182/blood.2023020118  0.139
2024 Stephenson JD, Totoo P, Burke DF, Jänes J, Beltrao P, Martin MJ. ProtVar: mapping and contextualizing human missense variation. Nucleic Acids Research. PMID 38769064 DOI: 10.1093/nar/gkae413  0.12
2022 Monahan KJ, Davies MM, Abulafi M, Banerjea A, Nicholson BD, Arasaradnam R, Barker N, Benton S, Booth R, Burling D, Carten RV, D'Souza N, East JE, Kleijnen J, Machesney M, ... ... Stephenson J, et al. Faecal immunochemical testing (FIT) in patients with signs or symptoms of suspected colorectal cancer (CRC): a joint guideline from the Association of Coloproctology of Great Britain and Ireland (ACPGBI) and the British Society of Gastroenterology (BSG). Gut. PMID 35820780 DOI: 10.1136/gutjnl-2022-327985  0.079
2019 Ruby JA, Pusceddu L, Plumb AA, Park SH, Kim DH, Regge D, Gangi A, Stephenson J, Kim SH, Pickhardt PJ. Traditional Serrated Adenomas on CT Colonography: International Multicenter Experience With This Rare Colorectal Neoplasm. Ajr. American Journal of Roentgenology. 1-7. PMID 31714847 DOI: 10.2214/AJR.19.21882  0.073
2021 Peprah D, Plumb A, Corr A, Muckian J, Smith K, Sergot A, Kuah JY, Stephenson J. Re-initiation of CT colonography services during the COVID-19 pandemic: Preliminary evaluation of safety. The British Journal of Radiology. 20201316. PMID 33835838 DOI: 10.1259/bjr.20201316  0.072
2011 Arshad A, Al-Leswas D, Stephenson J, Metcalfe M, Dennison A. Potential applications of fish oils rich in n-3 fatty acids in the palliative treatment of advanced pancreatic cancer. The British Journal of Nutrition. 106: 795-800. PMID 21745426 DOI: 10.1017/S0007114511003060  0.053
2013 Arshad A, Al-Leswas D, Al-Taan O, Stephenson J, Metcalfe M, Steward WP, Dennison AR. Pooled survival and response data from phase III randomized controlled trials for gemcitabine-based regimes in the treatment of advanced pancreatic cancer. American Journal of Clinical Oncology. 36: 411-4. PMID 21436672 DOI: 10.1097/COC.0b013e3182124216  0.051
2024 Foongkajornkiat S, Sokolowski K, Stephenson J, Lloyd T, Hugo HJ, Thompson EW, Momot KI. Quantitative measurement of mammographic density in breast-tissue explants using portable NMR: Precision and accuracy. Magnetic Resonance in Medicine. PMID 38380719 DOI: 10.1002/mrm.30040  0.05
2011 Johnson R, Trocha S, McLawhorn M, Worley M, Wheeler G, Thompson L, Schisler N, Schammel D, Schammel C, Stephenson J, Bolton W. Histology, not lymph node involvement, predicts long-term survival in bronchopulmonary carcinoids. The American Surgeon. 77: 1669-74. PMID 22273228  0.05
2017 Hudson SR, Little D, Mathew A, Rosof-Williams D, Pathiraja F, Varghese K, Stephenson J. Multidisciplinary Team and Clinical Meeting Data: JRF National Survey of Trainees 2015. The British Journal of Radiology. 20170156. PMID 28937264 DOI: 10.1259/bjr.20170156  0.036
2019 Isherwood J, Stephenson J, Rees Y, Bhardwaj N. Unusual case of post-operative small bowel obstruction. Anz Journal of Surgery. PMID 31066185 DOI: 10.1111/ans.15170  0.03
2013 Bolton WD, Johnson R, Banks E, Hutcheson S, Wall W, Stephenson J. Utility and accuracy of endobronchial ultrasound as a diagnostic and staging tool for the evaluation of mediastinal adenopathy. Surgical Endoscopy. 27: 1119-23. PMID 23239294 DOI: 10.1007/s00464-012-2613-9  0.028
2020 Ivey N, Rochester SN, Bolton W, Stephenson J, Ben-Or S. Robotic resection of an esophageal leiomyoma. Multimedia Manual of Cardiothoracic Surgery : Mmcts. 2020. PMID 32191404 DOI: 10.1510/mmcts.2020.002  0.025
2020 Duckett J, Thakar R, Shah V, Stephenson J, Balachandran A. The Use of Imaging for Synthetic Midurethral Slings. Journal of Ultrasound in Medicine : Official Journal of the American Institute of Ultrasound in Medicine. PMID 32125008 DOI: 10.1002/jum.15254  0.017
2022 Khoo FJ, Wong J, Stephenson J, Bennett I. Technique of intraoperative ultrasound-guided excision of impalpable breast lesions. Australasian Journal of Ultrasound in Medicine. 26: 63-66. PMID 36960138 DOI: 10.1002/ajum.12315  0.015
2020 Peterman DE, Rezeanu L, Bolton W, Stephenson J, Ben-Or S. Methamphetamine Granuloma Presenting as a Gastric Mass. The American Surgeon. 3134820940284. PMID 32723175 DOI: 10.1177/0003134820940284  0.01
2020 Lehane A, Fatula L, Ben-Or S, Bolton W, Stephenson J. Resection of Mediastinal Teratoma Invading the Lung and Pericardium. The American Surgeon. 3134820923298. PMID 32683927 DOI: 10.1177/0003134820923298  0.01
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