Simon Ebbinghaus - Publications

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39/72 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Samanta N, Ribeiro SS, Becker M, Laborie E, Pollak R, Timr S, Sterpone F, Ebbinghaus S. Sequestration of Proteins in Stress Granules Relies on the In-Cell but Not the Folding Stability. Journal of the American Chemical Society. 143: 19909-19918. PMID 34788540 DOI: 10.1021/jacs.1c09589  0.31
2020 Timr S, Gnutt D, Ebbinghaus S, Sterpone F. The Unfolding Journey of Superoxide Dismutase 1 Barrels under Crowding: Atomistic Simulations Shed Light on Intermediate States and Their Interactions with Crowders. The Journal of Physical Chemistry Letters. 11: 4206-4212. PMID 32364389 DOI: 10.1021/Acs.Jpclett.0C00699  0.394
2019 Pal S, Pyne P, Samanta N, Ebbinghaus S, Mitra RK. Thermal stability modulation of the native and chemically-unfolded state of bovine serum albumin by amino acids. Physical Chemistry Chemical Physics : Pccp. PMID 31799558 DOI: 10.1039/C9Cp04887A  0.369
2019 Owen MC, Gnutt D, Gao M, Wärmländer SKTS, Jarvet J, Gräslund A, Winter R, Ebbinghaus S, Strodel B. Effects of in vivo conditions on amyloid aggregation. Chemical Society Reviews. 48: 3946-3996. PMID 31192324 DOI: 10.1039/C8Cs00034D  0.336
2019 Gnutt D, Sistemich L, Ebbinghaus S. Protein Folding Modulation in Cells Subject to Differentiation and Stress. Frontiers in Molecular Biosciences. 6: 38. PMID 31179287 DOI: 10.3389/Fmolb.2019.00038  0.387
2019 Brylski O, Ebbinghaus S, Mueller JW. Melting Down Protein Stability: PAPS Synthase 2 in Patients and in a Cellular Environment. Frontiers in Molecular Biosciences. 6: 31. PMID 31131283 DOI: 10.3389/Fmolb.2019.00031  0.39
2019 Gnutt D, Timr S, Ahlers J, König B, Manderfeld E, Heyden M, Sterpone F, Ebbinghaus S. Stability Effect of Quinary Interactions Reversed by Single Point Mutations. Journal of the American Chemical Society. PMID 30740972 DOI: 10.1021/Jacs.8B13025  0.404
2018 Ribeiro SS, Ebbinghaus S, Marcos JC. Protein folding and quinary interactions: Creating cellular organization through functional disorder. Febs Letters. PMID 30070686 DOI: 10.1002/1873-3468.13211  0.392
2018 Wood RJ, Ormsby AR, Radwan M, Cox D, Sharma A, Vöpel T, Ebbinghaus S, Oliveberg M, Reid GE, Dickson A, Hatters DM. A biosensor-based framework to measure latent proteostasis capacity. Nature Communications. 9: 287. PMID 29348634 DOI: 10.1038/S41467-017-02562-5  0.353
2018 Majumdar BB, Ebbinghaus S, Heyden M. Macromolecular crowding effects in flexible polymer solutions Journal of Theoretical and Computational Chemistry. 17: 1840006. DOI: 10.1142/S0219633618400060  0.309
2018 Gnutt D, Ahlers J, König B, Heyden M, Ebbinghaus S. SOD1 Folding Modulation in the Crowded Cell Biophysical Journal. 114: 52a-53a. DOI: 10.1016/J.Bpj.2017.11.340  0.315
2017 Schulz F, Dirkmann M, Iglesias J, Muñoz V, Sokkar P, Rumancev C, von Gundlach A, Krenczyk O, Vöpel T, Nowack J, Schroer MA, Ebbinghaus S, Herrmann C, Rosenhahn A, Sanchez-Garcia E. A multi-perspective approach to solvent regulation of enzymatic activity: HMG-CoA reductase. Chembiochem : a European Journal of Chemical Biology. PMID 29139594 DOI: 10.1002/Cbic.201700596  0.301
2017 Vöpel T, Bravo-Rodriguez K, Mittal S, Vachharajani S, Gnutt D, Sharma A, Steinhof A, Fatoba O, Ellrichmann G, Nshanian M, Heid C, Loo JA, Klärner FG, Schrader T, Bitan G, ... ... Ebbinghaus S, et al. Inhibition of Huntingtin Exon-1 Aggregation by the Molecular Tweezer CLR01. Journal of the American Chemical Society. PMID 28406616 DOI: 10.1021/Jacs.6B11039  0.613
2017 Büning S, Sharma A, Vachharajani S, Newcombe E, Ormsby A, Gao M, Gnutt D, Vöpel T, Hatters DM, Ebbinghaus S. Conformational dynamics and self-association of intrinsically disordered Huntingtin exon 1 in cells. Physical Chemistry Chemical Physics : Pccp. PMID 28094373 DOI: 10.1039/C6Cp08167C  0.375
2017 Gnutt D, Ahlers J, König B, Ebbinghaus S. Intracellular Modulation of Protein Folding Stability Probed by a Novel Folding Reporter Biophysical Journal. 112. DOI: 10.1016/J.Bpj.2016.11.927  0.375
2017 Brylski O, Mueller JW, Ebbinghaus S. PAPS-Synthase: Dissecting Folding of a Large and Naturally Fragile Protein In Vitro and In Cellulo Biophysical Journal. 112. DOI: 10.1016/J.Bpj.2016.11.350  0.399
2017 Ebbinghaus S. Folding in the Cell - Ions, Crowders, Osmolytes Biophysical Journal. 112. DOI: 10.1016/J.Bpj.2016.11.044  0.427
2016 Senske M, Constantinescu-Aruxandei D, Havenith M, Herrmann C, Weingärtner H, Ebbinghaus S. The temperature dependence of the Hofmeister series: thermodynamic fingerprints of cosolute-protein interactions. Physical Chemistry Chemical Physics : Pccp. 18: 29698-29708. PMID 27806138 DOI: 10.1039/C6Cp05080H  0.388
2016 Gnutt D, Ebbinghaus S. The macromolecular crowding effect - from in vitro into the cell. Biological Chemistry. 397: 37-44. PMID 26351910 DOI: 10.1515/Hsz-2015-0161  0.394
2016 Senske M, Constantinescu Aruxandei D, Havenith M, Weingärtner H, Herrmann C, Ebbinghaus S. Thermodynamic Fingerprints of the Hofmeister Series - Protein Interactions with Ionic Liquids Biophysical Journal. 110: 212a. DOI: 10.1016/J.Bpj.2015.11.1180  0.345
2016 Brylski O, Gnutt D, Ebbinghaus S. In-Cell Protein Folding - PAPS Synthases Biophysical Journal. 110. DOI: 10.1016/J.Bpj.2015.11.1004  0.37
2015 Gnutt D, Gao M, Brylski O, Heyden M, Ebbinghaus S. Excluded-volume effects in living cells. Angewandte Chemie (International Ed. in English). 54: 2548-51. PMID 25557778 DOI: 10.1002/Anie.201409847  0.335
2015 Gao M, Estel K, Seeliger J, Friedrich RP, Dogan S, Wanker EE, Winter R, Ebbinghaus S. Modulation of human IAPP fibrillation: cosolutes, crowders and chaperones. Physical Chemistry Chemical Physics : Pccp. 17: 8338-48. PMID 25406896 DOI: 10.1039/C4Cp04682J  0.413
2015 Gnutt D, Gao M, Brylski O, Heyden M, Ebbinghaus S. Excluded Volume Effects Inside the Living Cell Biophysical Journal. 108: 114a. DOI: 10.1016/J.Bpj.2014.11.643  0.387
2015 Senske M, Törk L, Born B, Havenith M, Herrmann C, Ebbinghaus S. Enthalpy Mediated Protein Stabilization by Macromolecular Crowding Biophysical Journal. 108: 51a. DOI: 10.1016/J.Bpj.2014.11.314  0.379
2014 Senske M, Törk L, Born B, Havenith M, Herrmann C, Ebbinghaus S. Protein stabilization by macromolecular crowding through enthalpy rather than entropy. Journal of the American Chemical Society. 136: 9036-41. PMID 24888734 DOI: 10.1021/Ja503205Y  0.357
2014 Ebbinghaus S. Protein Folding and Aggregation - From Crowded Environments into the Cell Biophysical Journal. 106. DOI: 10.1016/J.Bpj.2013.11.4055  0.425
2013 Meister K, Ebbinghaus S, Xu Y, Duman JG, DeVries A, Gruebele M, Leitner DM, Havenith M. Long-range protein-water dynamics in hyperactive insect antifreeze proteins. Proceedings of the National Academy of Sciences of the United States of America. 110: 1617-22. PMID 23277543 DOI: 10.1073/Pnas.1214911110  0.381
2013 Ebbinghaus S. Protein Folding and Aggregation in the Cell Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.3180  0.445
2012 Ebbinghaus S, Meister K, Prigozhin MB, Devries AL, Havenith M, Dzubiella J, Gruebele M. Functional importance of short-range binding and long-range solvent interactions in helical antifreeze peptides. Biophysical Journal. 103: L20-2. PMID 22853917 DOI: 10.1016/J.Bpj.2012.06.013  0.318
2011 Dhar A, Girdhar K, Singh D, Gelman H, Ebbinghaus S, Gruebele M. Protein stability and folding kinetics in the nucleus and endoplasmic reticulum of eucaryotic cells. Biophysical Journal. 101: 421-30. PMID 21767495 DOI: 10.1016/J.Bpj.2011.05.071  0.352
2011 Ebbinghaus S, Gruebele M. Protein folding landscapes in the living cell Journal of Physical Chemistry Letters. 2: 314-319. DOI: 10.1021/Jz101729Z  0.424
2010 Dhar A, Ebbinghaus S, Shen Z, Mishra T, Gruebele M. The diffusion coefficient for PGK folding in eukaryotic cells. Biophysical Journal. 99: L69-71. PMID 21044564 DOI: 10.1016/J.Bpj.2010.08.066  0.347
2010 Dhar A, Samiotakis A, Ebbinghaus S, Nienhaus L, Homouz D, Gruebele M, Cheung MS. Structure, function, and folding of phosphoglycerate kinase are strongly perturbed by macromolecular crowding. Proceedings of the National Academy of Sciences of the United States of America. 107: 17586-91. PMID 20921368 DOI: 10.1073/Pnas.1006760107  0.332
2010 Ebbinghaus S, Meister K, Born B, DeVries AL, Gruebele M, Havenith M. Antifreeze glycoprotein activity correlates with long-range protein-water dynamics. Journal of the American Chemical Society. 132: 12210-1. PMID 20712311 DOI: 10.1021/Ja1051632  0.318
2010 Ebbinghaus S, Dhar A, McDonald JD, Gruebele M. Protein folding stability and dynamics imaged in a living cell. Nature Methods. 7: 319-23. PMID 20190760 DOI: 10.1038/Nmeth.1435  0.406
2009 Born B, Kim SJ, Ebbinghaus S, Gruebele M, Havenith M. The terahertz dance of water with the proteins: the effect of protein flexibility on the dynamical hydration shell of ubiquitin. Faraday Discussions. 141: 161-73; discussion 1. PMID 19227357 DOI: 10.1039/B804734K  0.379
2008 Ebbinghaus S, Kim SJ, Heyden M, Yu X, Gruebele M, Leitner DM, Havenith M. Protein sequence- and pH-dependent hydration probed by terahertz spectroscopy. Journal of the American Chemical Society. 130: 2374-5. PMID 18247605 DOI: 10.1021/Ja0746520  0.353
2007 Ebbinghaus S, Kim SJ, Heyden M, Yu X, Heugen U, Gruebele M, Leitner DM, Havenith M. An extended dynamical hydration shell around proteins. Proceedings of the National Academy of Sciences of the United States of America. 104: 20749-52. PMID 18093918 DOI: 10.1073/Pnas.0709207104  0.372
Low-probability matches (unlikely to be authored by this person)
2016 Gao M, Gnutt D, Orban A, Appel B, Righetti F, Winter R, Narberhaus F, Müller S, Ebbinghaus S. RNA Hairpin Folding in the Crowded Cell. Angewandte Chemie (International Ed. in English). PMID 26833452 DOI: 10.1002/Anie.201510847  0.299
2020 Hämisch B, Pollak R, Ebbinghaus S, Huber K. Self-Assembly of Pseudo-Isocyanine Chloride as a Sensor for Macromolecular Crowding in vitro and in vivo. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 32154954 DOI: 10.1002/Chem.202000113  0.292
2014 Büning S, Ebbinghaus S. Biopolymers: Relaxation kinetics in living cells Biospektrum. 20: 383-385. DOI: 10.1007/S12268-014-0452-Z  0.287
2017 Gnutt D, Brylski O, Edengeiser E, Havenith M, Ebbinghaus S. Imperfect crowding adaptation of mammalian cells towards osmotic stress and its modulation by osmolytes. Molecular Biosystems. PMID 28929156 DOI: 10.1039/C7Mb00432J  0.286
2017 Ganguly A, Luong TQ, Brylski O, Dirkmann M, Möller D, Ebbinghaus S, Schulz F, Winter R, Sanchez-Garcia E, Thiel W. Elucidation of the Catalytic Mechanism of a Miniature Zinc Finger Hydrolase. The Journal of Physical Chemistry. B. PMID 28648071 DOI: 10.1021/Acs.Jpcb.7B05027  0.28
2015 Gnutt D, Gao M, Brylski O, Heyden M, Ebbinghaus S. Inside Back Cover: Excluded-Volume Effects in Living Cells (Angew. Chem. Int. Ed. 8/2015) Angewandte Chemie International Edition. 54: 2561-2561. DOI: 10.1002/Anie.201500265  0.279
2022 Samanta N, Ruiz-Blanco YB, Fetahaj Z, Gnutt D, Lantz C, Loo JA, Sanchez-Garcia E, Ebbinghaus S. Superoxide dismutase 1 folding stability as a target for molecular tweezers in SOD1-related amyotrophic lateral sclerosis. Chembiochem : a European Journal of Chemical Biology. PMID 36083789 DOI: 10.1002/cbic.202200396  0.277
2022 Raeburn CB, Ormsby AR, Cox D, Gerak CA, Makhoul C, Moily NS, Ebbinghaus S, Dickson A, McColl G, Hatters DM. A biosensor of protein foldedness identifies increased "holdase" activity of chaperones in the nucleus following increased cytosolic protein aggregation. The Journal of Biological Chemistry. 102158. PMID 35724963 DOI: 10.1016/j.jbc.2022.102158  0.263
2015 Edengeiser E, Meister K, Bründermann E, Büning S, Ebbinghaus S, Havenith M. Non-invasive chemical assessment of living human spermatozoa Rsc Advances. 5: 10424-10429. DOI: 10.1039/C4Ra12158A  0.259
2023 Rajput S, Pollak R, Huber K, Ebbinghaus S, Nayar D. Ethylene glycol energetically disfavours oligomerization of pseudoisocyanine dyestuffs at crowded concentrations. Soft Matter. 19: 6399-6413. PMID 37580997 DOI: 10.1039/d3sm00564j  0.256
2023 Ribeiro SS, Gnutt D, Azoulay-Ginsburg S, Fetahaj Z, Spurlock E, Lindner F, Kuz D, Cohen-Erez Y, Rapaport H, Israelson A, Gruzman AL, Ebbinghaus S. Intracellular spatially-targeted chemical chaperones increase native state stability of mutant SOD1 barrel. Biological Chemistry. PMID 37555646 DOI: 10.1515/hsz-2023-0198  0.248
2015 Vöpel T, Ning Saw E, Hartmann V, Williams R, Müller F, Schuhmann W, Plumeré N, Nowaczyk M, Ebbinghaus S, Rögner M. Simultaneous measurements of photocurrents and H2O2 evolution from solvent exposed photosystem 2 complexes. Biointerphases. 11: 019001. PMID 26700470 DOI: 10.1116/1.4938090  0.246
2020 Rumancev C, Gräfenstein A, Vöpel T, Stuhr S, von Gundlach AR, Senkbeil T, Garrevoet J, Jolmes L, König B, Falkenberg G, Ebbinghaus S, Schroeder WH, Rosenhahn A. X-ray fluorescence analysis of metal distributions in cryogenic biological samples using large-acceptance-angle SDD detection and continuous scanning at the Hard X-ray Micro/Nano-Probe beamline P06 at PETRA III. Journal of Synchrotron Radiation. 27: 60-66. PMID 31868737 DOI: 10.1107/S1600577519014048  0.238
2020 Hämisch B, Pollak R, Ebbinghaus S, Huber K. Cover Feature: Self‐Assembly of Pseudo‐Isocyanine Chloride as a Sensor for Macromolecular Crowding In Vitro and In Vivo (Chem. Eur. J. 31/2020) Chemistry: a European Journal. 26: 6942-6942. DOI: 10.1002/Chem.202002129  0.233
2014 Gnutt D, Gao M, Brylski O, Heyden M, Ebbinghaus S. Effekte des Volumenausschlusses in lebenden Zellen Angewandte Chemie. 127: 2578-2581. DOI: 10.1002/Ange.201409847  0.232
2017 Heyden M, Ebbinghaus S, Winter R. Das Innere der Zelle: Ein komplexes Lösungsmittel Chemie in Unserer Zeit. 51: 26-33. DOI: 10.1002/Ciuz.201700777  0.23
2003 MADEJA F, HECKER A, EBBINGHAUS S, HAVENITH M. High resolution spectroscopy of the ν3band of the van der Waals complex Ar—DCOOH Molecular Physics. 101: 1511-1515. DOI: 10.1080/0026897031000108078  0.226
2021 Azoulay-Ginsburg S, Di Salvio M, Weitman M, Afri M, Ribeiro S, Ebbinghaus S, Cestra G, Gruzman A. Chemical chaperones targeted to the endoplasmic reticulum (ER) and lysosome prevented neurodegeneration in a C9orf72 repeat expansion drosophila amyotrophic lateral sclerosis (ALS) model. Pharmacological Reports : Pr. PMID 33661518 DOI: 10.1007/s43440-021-00226-2  0.225
2015 Vöpel T, Scholz R, Davico L, Gross M, Büning S, Kareth S, Weidner E, Ebbinghaus S. Infrared laser triggered release of bioactive compounds from single hard shell microcapsules. Chemical Communications (Cambridge, England). 51: 6913-6. PMID 25659363 DOI: 10.1039/C4Cc09745A  0.223
2006 Ebbinghaus S, Schröck K, Schauer JC, Bründermann E, Heyden M, Schwaab G, Böke M, Winter J, Tani M, Havenith M. Terahertz time-domain spectroscopy as a new tool for the characterization of dust forming plasmas Plasma Sources Science and Technology. 15: 72-77. DOI: 10.1088/0963-0252/15/1/011  0.213
2016 Gao M, Gnutt D, Orban A, Appel B, Righetti F, Winter R, Narberhaus F, Müller S, Ebbinghaus S. Faltung einer RNA‐Haarnadel in der dicht gedrängten Zelle Angewandte Chemie. 128: 3279-3283. DOI: 10.1002/Ange.201510847  0.211
2021 Brylski O, Shrestha P, Gnutt P, Gnutt D, Mueller JW, Ebbinghaus S. Cellular ATP Levels Determine the Stability of a Nucleotide Kinase. Frontiers in Molecular Biosciences. 8: 790304. PMID 34966785 DOI: 10.3389/fmolb.2021.790304  0.204
2022 Gräfenstein A, Rumancev C, Pollak R, Hämisch B, Galbierz V, Schroeder WH, Garrevoet J, Falkenberg G, Vöpel T, Huber K, Ebbinghaus S, Rosenhahn A. Spatial Distribution of Intracellular Ion Concentrations in Aggregate-Forming HeLa Cells Analyzed by μ-XRF Imaging. Chemistryopen. 11: e202200024. PMID 35363437 DOI: 10.1002/open.202200024  0.202
2003 Madeja F, Hecker A, Ebbinghaus S, Havenith M. High resolution spectroscopy of the nu(3) band of DCOOD. Spectrochimica Acta. Part a, Molecular and Biomolecular Spectroscopy. 59: 1773-82. PMID 12736063 DOI: 10.1016/S1386-1425(02)00412-2  0.192
2016 Gnutt D, Ebbinghaus S, Heyden M. Vom Reagenzglas in die Zelle Nachrichten Aus Der Chemie. 64: 310-313. DOI: 10.1002/Nadc.20164047296  0.192
2023 Hautke A, Voronin A, Idiris F, Riel A, Lindner F, Lelièvre-Büttner A, Zhu J, Appel B, Fatti E, Weis K, Müller S, Schug A, Ebbinghaus S. CAG-Repeat RNA Hairpin Folding and Recruitment to Nuclear Speckles with a Pivotal Role of ATP as a Cosolute. Journal of the American Chemical Society. 145: 9571-9583. PMID 37062072 DOI: 10.1021/jacs.2c13653  0.19
2015 Gnutt D, Gao M, Brylski O, Heyden M, Ebbinghaus S. Innenrücktitelbild: Effekte des Volumenausschlusses in lebenden Zellen (Angew. Chem. 8/2015) Angewandte Chemie. 127: 2591-2591. DOI: 10.1002/Ange.201500265  0.19
2022 Brylski O, Shrestha P, House PJ, Gnutt P, Mueller JW, Ebbinghaus S. Disease-Related Protein Variants of the Highly Conserved Enzyme PAPSS2 Show Marginal Stability and Aggregation in Cells. Frontiers in Molecular Biosciences. 9: 860387. PMID 35463959 DOI: 10.3389/fmolb.2022.860387  0.181
2023 Hautke A, Ebbinghaus S. The emerging role of ATP as a cosolute for biomolecular processes. Biological Chemistry. 404: 897-908. PMID 37656203 DOI: 10.1515/hsz-2023-0202  0.17
2023 Koch L, Pollak R, Ebbinghaus S, Huber K. A Comparative Study on Cyanine Dyestuffs as Sensor Candidates for Macromolecular Crowding In Vitro and In Vivo. Biosensors. 13. PMID 37504118 DOI: 10.3390/bios13070720  0.168
2021 Werz DB, Patalag LJ, Ahadi S, Lashchuk O, Ebbinghaus S, Jones PG. GlycoBODIPYs: Sugars Serving as Natural Stock for Water-soluble Fluorescent Probes of Complex Chiral Morphology. Angewandte Chemie (International Ed. in English). PMID 33492705 DOI: 10.1002/anie.202016764  0.161
2022 Alfahel L, Argueti-Ostrovsky S, Barel S, Ali Saleh M, Kahn J, Azoulay-Ginsburg S, Rothstein A, Ebbinghaus S, Gruzman A, Israelson A. 4-Phenylbutyric Acid (4-PBA) Derivatives Prevent SOD1 Amyloid Aggregation In Vitro with No Effect on Disease Progression in SOD1-ALS Mice. International Journal of Molecular Sciences. 23. PMID 36012668 DOI: 10.3390/ijms23169403  0.141
2021 Rumancev C, Vöpel T, Stuhr S, von Gundlach A, Senkbeil T, Ebbinghaus S, Garrevoet J, Falkenberg G, De Samber B, Vincze L, Rosenhahn A, Schroeder W. Micro x-ray fluorescence analysis of trace element distribution in frozen hydrated HeLa cells at the P06 beamline at Petra III. Biointerphases. 16: 011004. PMID 33706519 DOI: 10.1116/6.0000593  0.123
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