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Alan Mark - Publications

Affiliations: 
Institute for Molecular Bioscience University of Queensland, Saint Lucia, Queensland, Australia 
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22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 John T, Rampioni A, Poger D, Mark AE. Molecular Insights into the Dynamics of Amyloid Fibril Growth: Elongation and Lateral Assembly of GNNQQNY Protofibrils. Acs Chemical Neuroscience. PMID 38235697 DOI: 10.1021/acschemneuro.3c00754  0.367
2023 Kuschert S, Stroet M, Chin YK, Conibear AC, Jia X, Lee T, Bartling CRO, Strømgaard K, Güntert P, Rosengren KJ, Mark AE, Mobli M. Facilitating the structural characterisation of non-canonical amino acids in biomolecular NMR. Magnetic Resonance (Gottingen, Germany). 4: 57-72. PMID 37904802 DOI: 10.5194/mr-4-57-2023  0.315
2018 Condic-Jurkic K, Subramanian N, Mark AE, O'Mara ML. The reliability of molecular dynamics simulations of the multidrug transporter P-glycoprotein in a membrane environment. Plos One. 13: e0191882. PMID 29370310 DOI: 10.1371/journal.pone.0191882  0.331
2017 Schumann-Gillett A, Mark AE, Deplazes E, O'Mara ML. A potential new, stable state of the E-cadherin strand-swapped dimer in solution. European Biophysics Journal : Ebj. PMID 28620741 DOI: 10.1007/s00249-017-1229-3  0.3
2017 Corbett MS, Mark AE, Poger D. Do All X-ray Structures of Protein-Ligand Complexes Represent Functional States? EPOR, a Case Study. Biophysical Journal. 112: 595-604. PMID 28256220 DOI: 10.1016/j.bpj.2016.12.042  0.306
2016 Casey LW, Lavrencic P, Bentham AR, Cesari S, Ericsson DJ, Croll T, Turk D, Anderson PA, Mark AE, Dodds PN, Mobli M, Kobe B, Williams SJ. The CC domain structure from the wheat stem rust resistance protein Sr33 challenges paradigms for dimerization in plant NLR proteins. Proceedings of the National Academy of Sciences of the United States of America. PMID 27791121 DOI: 10.1073/Pnas.1609922113  0.335
2013 Jia Z, O'Mara ML, Zuegg J, Cooper MA, Mark AE. Vancomycin: ligand recognition, dimerization and super-complex formation. The Febs Journal. 280: 1294-307. PMID 23298227 DOI: 10.1111/Febs.12121  0.345
2012 O'Mara ML, Mark AE. The Effect of Environment on the Structure of a Membrane Protein: P-Glycoprotein under Physiological Conditions. Journal of Chemical Theory and Computation. 8: 3964-76. PMID 26593033 DOI: 10.1021/ct300254y  0.33
2012 Fan H, Periole X, Mark AE. Mimicking the action of folding chaperones by Hamiltonian replica-exchange molecular dynamics simulations: Application in the refinement of de novo models Proteins: Structure, Function and Bioinformatics. 80: 1744-1754. PMID 22411697 DOI: 10.1002/prot.24068  0.352
2008 Kwan AH, Macindoe I, Vukasin PV, Morris VK, Kass I, Gupte R, Mark AE, Templeton MD, Mackay JP, Sunde M. The Cys3-Cys4 loop of the hydrophobin EAS is not required for rodlet formation and surface activity. Journal of Molecular Biology. 382: 708-20. PMID 18674544 DOI: 10.1016/J.Jmb.2008.07.034  0.334
2008 Cemazar M, Joshi A, Daly NL, Mark AE, Craik DJ. The Structure of a Two-Disulfide Intermediate Assists in Elucidating the Oxidative Folding Pathway of a Cyclic Cystine Knot Protein Structure. 16: 842-851. PMID 18547517 DOI: 10.1016/J.Str.2008.02.023  0.352
2008 Zhu J, Fan H, Periole X, Honig B, Mark AE. Refining homology models by combining replica-exchange molecular dynamics and statistical potentials. Proteins. 72: 1171-88. PMID 18338384 DOI: 10.1002/Prot.22005  0.326
2008 Mueller DS, Kampmann T, Yennamalli R, Young PR, Kobe B, Mark AE. Histidine protonation and the activation of viral fusion proteins. Biochemical Society Transactions. 36: 43-5. PMID 18208382 DOI: 10.1042/Bst0360043  0.303
2007 Villa A, Fan H, Wassenaar T, Mark AE. How sensitive are nanosecond molecular dynamics simulations of proteins to changes in the force field? The Journal of Physical Chemistry. B. 111: 6015-25. PMID 17489626 DOI: 10.1021/jp068580v  0.309
2006 Kampmann T, Mueller DS, Mark AE, Young PR, Kobe B. The Role of histidine residues in low-pH-mediated viral membrane fusion. Structure (London, England : 1993). 14: 1481-7. PMID 17027497 DOI: 10.1016/J.Str.2006.07.011  0.324
2006 Fan H, Wang X, Zhu J, Robillard GT, Mark AE. Molecular dynamics simulations of the hydrophobin SC3 at a hydrophobic/hydrophilic interface. Proteins. 64: 863-73. PMID 16770796 DOI: 10.1002/prot.20936  0.444
2006 Fan H, Mark AE. Mimicking the action of GroEL in molecular dynamics simulations: Application to the refinement of protein structures Protein Science. 15: 441-448. PMID 16452612 DOI: 10.1110/ps.051721006  0.41
2006 Wassenaar TA, Mark AE. The effect of box shape on the dynamic properties of proteins simulated under periodic boundary conditions Journal of Computational Chemistry. 27: 316-325. PMID 16358324 DOI: 10.1002/jcc.20341  0.304
2004 Fan H, Mark AE. Mimicking the action of folding chaperones in molecular dynamics simulations: Application to the refinement of homology-based protein structures Protein Science. 13: 992-999. PMID 15010545 DOI: 10.1110/ps.03449904  0.476
2004 Fan H, Mark AE. Refinement of homology-based protein structures by molecular dynamics simulation techniques Protein Science. 13: 211-220. PMID 14691236 DOI: 10.1110/ps.03381404  0.437
2003 Fan H, Mark AE. Relative stability of protein structures determined by X-ray crystallography or NMR spectroscopy: A molecular dynamics simulation study Proteins: Structure, Function and Genetics. 53: 111-120. PMID 12945054 DOI: 10.1002/prot.10496  0.385
2002 Zangi R, de Vocht ML, Robillard GT, Mark AE. Molecular dynamics study of the folding of hydrophobin SC3 at a hydrophilic/hydrophobic interface. Biophysical Journal. 83: 112-24. PMID 12080104 DOI: 10.1016/S0006-3495(02)75153-9  0.47
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