| Year |
Citation |
Score |
| 2019 |
Uehling JK, Entler MR, Meredith HR, Millet LJ, Timm CM, Aufrecht JA, Bonito GM, Engle NL, Labbé JL, Doktycz MJ, Retterer ST, Spatafora JW, Stajich JE, Tschaplinski TJ, Vilgalys RJ. Microfluidics and Metabolomics Reveal Symbiotic Bacterial-Fungal Interactions Between and Include Metabolite Exchange. Frontiers in Microbiology. 10: 2163. PMID 31632357 DOI: 10.3389/Fmicb.2019.02163 |
0.563 |
|
| 2019 |
Patabadige DEW, Millet LJ, Aufrecht JA, Shankles PG, Standaert RF, Retterer ST, Doktycz MJ. Label-free time- and space-resolved exometabolite sampling of growing plant roots through nanoporous interfaces. Scientific Reports. 9: 10272. PMID 31312009 DOI: 10.1038/S41598-019-46538-5 |
0.609 |
|
| 2019 |
Millet LJ, Aufrecht J, Labbé J, Uehling J, Vilgalys R, Estes ML, Miquel Guennoc C, Deveau A, Olsson S, Bonito G, Doktycz MJ, Retterer ST. Increasing access to microfluidics for studying fungi and other branched biological structures. Fungal Biology and Biotechnology. 6: 1. PMID 31198578 DOI: 10.1186/s40694-019-0071-z |
0.605 |
|
| 2019 |
Davern S, O’Neil D, Hallikainen H, O’Neil K, Allman S, Millet L, Retterer S, Doktycz M, Standaert R, Boll R, Van Cleve S, DePaoli D, Mirzadeh S. Microfluidics-based separation of actinium-225 from radium-225 for medical applications Separation Science and Technology. 54: 1994-2002. DOI: 10.1080/01496395.2019.1614956 |
0.551 |
|
| 2015 |
Millet LJ, Lucheon JD, Standaert RF, Retterer ST, Doktycz MJ. Modular microfluidics for point-of-care protein purifications. Lab On a Chip. 15: 1799-811. PMID 25740172 DOI: 10.1039/C5Lc00094G |
0.597 |
|
| 2015 |
Millet LJ, Doktycz MJ, Retterer ST. Nanofluidic interfaces in microfluidic networks Journal of Vacuum Science and Technology B: Nanotechnology and Microelectronics. 33. DOI: 10.1116/1.4931590 |
0.609 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2015 |
Shankles PG, Timm AC, Doktycz MJ, Retterer ST. Fabrication of nanoporous membranes for tuning microbial interactions and biochemical reactions. Journal of Vacuum Science and Technology. B, Nanotechnology & Microelectronics : Materials, Processing, Measurement, & Phenomena : Jvst B. 33: 06FM03. PMID 26543684 DOI: 10.1116/1.4932671 |
0.284 |
|
| 2011 |
Siuti P, Retterer ST, Doktycz MJ. Continuous protein production in nanoporous, picolitre volume containers. Lab On a Chip. 11: 3523-9. PMID 21879140 DOI: 10.1039/C1Lc20462A |
0.281 |
|
| 2018 |
Retterer ST, Morrell-Falvey JL, Doktycz MJ. Nano-Enabled Approaches to Chemical Imaging in Biosystems. Annual Review of Analytical Chemistry (Palo Alto, Calif.). PMID 29490189 DOI: 10.1146/Annurev-Anchem-061417-125635 |
0.269 |
|
| 2007 |
Doktycz MJ, Simpson ML. Nano-enabled synthetic biology. Molecular Systems Biology. 3: 125. PMID 17625513 DOI: 10.1038/msb4100165 |
0.267 |
|
| 2012 |
Lian M, Collier CP, Doktycz MJ, Retterer ST. Monodisperse alginate microgel formation in a three-dimensional microfluidic droplet generator. Biomicrofluidics. 6: 44108. PMID 24198865 DOI: 10.1063/1.4765337 |
0.266 |
|
| 2015 |
Timm AC, Shankles PG, Foster CM, Doktycz MJ, Retterer ST. Toward Microfluidic Reactors for Cell-Free Protein Synthesis at the Point-of-Care. Small (Weinheim An Der Bergstrasse, Germany). PMID 26690885 DOI: 10.1002/Smll.201502764 |
0.26 |
|
| 2010 |
Retterer ST, Siuti P, Choi CK, Thomas DK, Doktycz MJ. Development and fabrication of nanoporous silicon-based bioreactors within a microfluidic chip. Lab On a Chip. 10: 1174-81. PMID 20390137 DOI: 10.1039/B921592A |
0.249 |
|
| 2017 |
Ievlev AV, Belianinov A, Jesse S, Allison DP, Doktycz MJ, Retterer ST, Kalinin SV, Ovchinnikova OS. Automated Interpretation and Extraction of Topographic Information from Time of Flight Secondary Ion Mass Spectrometry Data. Scientific Reports. 7: 17099. PMID 29213083 DOI: 10.1038/S41598-017-17049-Y |
0.245 |
|
| 2006 |
Hildebrand M, York E, Kelz JI, Davis AK, Frigeri LG, Allison DP, Doktycz MJ. Nanoscale control of silica morphology and three-dimensional structure during diatom cell wall formation Journal of Materials Research. 21: 2689-2698. DOI: 10.1557/Jmr.2006.0333 |
0.244 |
|
| 2015 |
Timm CM, Hansen RR, Doktycz MJ, Retterer ST, Pelletier DA. Microstencils to generate defined, multi-species patterns of bacteria. Biomicrofluidics. 9: 064103. PMID 26594264 DOI: 10.1063/1.4935938 |
0.238 |
|
| 2004 |
Fletcher BL, Hullander ED, Melechko AV, McKnight TE, Klein KL, Hensley DK, Morrell JL, Simpson ML, Doktycz MJ. Microarrays of biomimetic cells formed by the controlled synthesis of carbon nanofiber membranes Nano Letters. 4: 1809-1814. DOI: 10.1021/Nl0493702 |
0.232 |
|
| 2020 |
Mohr B, Giannone RJ, Hettich RL, Doktycz MJ. Targeted Growth Medium Dropouts Promote Aromatic Compound Synthesis in Crude Cell-Free Systems. Acs Synthetic Biology. PMID 33044063 DOI: 10.1021/acssynbio.9b00524 |
0.224 |
|
| 2019 |
Aufrecht JA, Fowlkes JD, Bible AN, Morrell-Falvey J, Doktycz MJ, Retterer ST. Pore-scale hydrodynamics influence the spatial evolution of bacterial biofilms in a microfluidic porous network. Plos One. 14: e0218316. PMID 31246972 DOI: 10.1371/Journal.Pone.0218316 |
0.223 |
|
| 2012 |
Karig DK, Iyer S, Simpson ML, Doktycz MJ. Expression optimization and synthetic gene networks in cell-free systems. Nucleic Acids Research. 40: 3763-74. PMID 22180537 DOI: 10.1093/nar/gkr1191 |
0.223 |
|
| 2009 |
Siuti P, Retterer ST, Choi CK, Fowlkes JD, Doktycz MJ. Cell Free Translation in Engineered Picoliter Volume Containers. Annual Ornl Biomedical Science and Engineering Center Conference Ornl Biomedical Science and Engineering Center Conference. 2009: 1-4. PMID 21278819 DOI: 10.1109/BSEC.2009.5090477 |
0.222 |
|
| 2016 |
Mohr BP, Retterer ST, Doktycz MJ. While-you-wait proteins? Producing biomolecules at the point of need. Expert Review of Proteomics. PMID 27402489 DOI: 10.1080/14789450.2016.1209415 |
0.22 |
|
| 2015 |
Timm AC, Shankles PG, Foster CM, Doktycz MJ, Retterer ST. Characterization of extended channel bioreactors for continuous-flow protein production Journal of Vacuum Science and Technology B: Nanotechnology and Microelectronics. 33. DOI: 10.1116/1.4932155 |
0.219 |
|
| 2016 |
Hansen RH, Timm AC, Timm CM, Bible AN, Morrell-Falvey JL, Pelletier DA, Simpson ML, Doktycz MJ, Retterer ST. Stochastic Assembly of Bacteria in Microwell Arrays Reveals the Importance of Confinement in Community Development. Plos One. 11: e0155080. PMID 27152511 DOI: 10.1371/Journal.Pone.0155080 |
0.213 |
|
| 2017 |
Aufrecht JA, Ryan JM, Hasim S, Allison DP, Nebenführ A, Doktycz MJ, Retterer ST. Imaging the Root Hair Morphology of Arabidopsis Seedlings in a Two-layer Microfluidic Platform. Journal of Visualized Experiments : Jove. PMID 28829431 DOI: 10.3791/55971 |
0.212 |
|
| 2019 |
Garcia D, Cheng X, Land ML, Standaert RF, Morrell-Falvey JL, Doktycz MJ. Computationally-Guided Discovery and Experimental Validation of Indole-3-Acetic Acid Synthesis Pathways. Acs Chemical Biology. PMID 31693336 DOI: 10.1021/Acschembio.9B00725 |
0.211 |
|
| 2011 |
Allison DP, Sullivan CJ, Mortensen NP, Retterer ST, Doktycz M. Bacterial immobilization for imaging by atomic force microscopy. Journal of Visualized Experiments : Jove. PMID 21860374 DOI: 10.3791/2880 |
0.21 |
|
| 2010 |
Pelletier DA, Suresh AK, Holton GA, McKeown CK, Wang W, Gu B, Mortensen NP, Allison DP, Joy DC, Allison MR, Brown SD, Phelps TJ, Doktycz MJ. Effects of engineered cerium oxide nanoparticles on bacterial growth and viability. Applied and Environmental Microbiology. 76: 7981-9. PMID 20952651 DOI: 10.1128/Aem.00650-10 |
0.21 |
|
| 2010 |
Choi CK, Fowlkes JD, Retterer ST, Siuti P, Iyer S, Doktycz MJ. Surface charge- and space-dependent transport of proteins in crowded environments of nanotailored posts. Acs Nano. 4: 3345-55. PMID 20515056 DOI: 10.1021/Nn901831Q |
0.205 |
|
| 2004 |
Coffman EA, Melechko AV, Allison DP, Simpson ML, Doktycz MJ. Surface patterning of silica nanostructures using bio-inspired templates and directed synthesis. Langmuir : the Acs Journal of Surfaces and Colloids. 20: 8431-6. PMID 15379457 DOI: 10.1021/La048907O |
0.204 |
|
| 2007 |
Sullivan CJ, Venkataraman S, Retterer ST, Allison DP, Doktycz MJ. Comparison of the indentation and elasticity of E. coli and its spheroplasts by AFM. Ultramicroscopy. 107: 934-42. PMID 17574761 DOI: 10.1016/J.Ultramic.2007.04.017 |
0.201 |
|
| 2021 |
Garcia DC, Dinglasan JLN, Shrestha H, Abraham PE, Hettich RL, Doktycz MJ. A lysate proteome engineering strategy for enhancing cell-free metabolite production. Metabolic Engineering Communications. 12: e00162. PMID 33552897 DOI: 10.1016/j.mec.2021.e00162 |
0.201 |
|
| 2002 |
Buchanan MV, Larimer FW, Wiley HS, Kennel SJ, Squier TJ, Ramsey JM, Rodland KD, Hurst GB, Smith RD, Xu Y, Dixon D, Doktycz MJ, Colson S, Gesteland R, Giometti C, et al. Genomes to Life "Center for Molecular and Cellular Systems": a research program for identification and characterization of protein complexes. Omics : a Journal of Integrative Biology. 6: 287-303. PMID 12630408 DOI: 10.1089/153623102321112737 |
0.2 |
|
| 2011 |
Gottel NR, Castro HF, Kerley M, Yang Z, Pelletier DA, Podar M, Karpinets T, Uberbacher E, Tuskan GA, Vilgalys R, Doktycz MJ, Schadt CW. Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types. Applied and Environmental Microbiology. 77: 5934-44. PMID 21764952 DOI: 10.1128/Aem.05255-11 |
0.199 |
|
| 2010 |
Fowlkes JD, Doktycz MJ, Rack PD. An optimized nanoparticle separator enabled by electron beam induced deposition. Nanotechnology. 21: 165303. PMID 20351412 DOI: 10.1088/0957-4484/21/16/165303 |
0.197 |
|
| 2001 |
Fredrickson HL, Perkins EJ, Bridges TS, Tonucci RJ, Fleming JK, Nagel A, Diedrich K, Mendez-Tenorio A, Doktycz MJ, Beattie KL. Towards environmental toxicogenomics - Development of a flow-through, high-density DNA hybridization array and its application to ecotoxicity assessment Science of the Total Environment. 274: 137-149. PMID 11453290 DOI: 10.1016/S0048-9697(01)00739-2 |
0.196 |
|
| 2021 |
Wang J, Carper DL, Burdick LH, Shrestha HK, Appidi MR, Abraham PE, Timm CM, Hettich RL, Pelletier DA, Doktycz MJ. Formation, characterization and modeling of emergent synthetic microbial communities. Computational and Structural Biotechnology Journal. 19: 1917-1927. PMID 33995895 DOI: 10.1016/j.csbj.2021.03.034 |
0.195 |
|
| 2009 |
Edwards AN, Fowlkes JD, Owens ET, Standaert RF, Pelletier DA, Hurst GB, Doktycz MJ, Morrell-Falvey JL. An in vivo imaging-based assay for detecting protein interactions over a wide range of binding affinities. Analytical Biochemistry. 395: 166-77. PMID 19698693 DOI: 10.1016/J.Ab.2009.08.015 |
0.194 |
|
| 2021 |
Cregger MA, Carper DL, Christel S, Doktycz MJ, Labbé J, Michener JK, Dove NC, Johnston ER, Moore JAM, Vélez JM, Morrell-Falvey J, Muchero W, Pelletier DA, Retterer S, Tschaplinski TJ, et al. Plant–Microbe Interactions: From Genes to Ecosystems Using Populus as a Model System Phytobiomes Journal. 5: 29-38. DOI: 10.1094/PBIOMES-01-20-0009-FI |
0.19 |
|
| 2016 |
Timm CM, Pelletier DA, Jawdy SS, Gunter LE, Henning JA, Engle N, Aufrecht J, Gee E, Nookaew I, Yang Z, Lu TY, Tschaplinski TJ, Doktycz MJ, Tuskan GA, Weston DJ. Two Poplar-Associated Bacterial Isolates Induce Additive Favorable Responses in a Constructed Plant-Microbiome System. Frontiers in Plant Science. 7: 497. PMID 27200001 DOI: 10.3389/Fpls.2016.00497 |
0.189 |
|
| 2010 |
Wang W, Howe JY, Li Y, Qiu X, Joy DC, Paranthaman MP, Doktycz MJ, Gu B. A surfactant and template-free route for synthesizing ceria nanocrystals with tunable morphologies Journal of Materials Chemistry. 20: 7776-7781. DOI: 10.1039/c0jm00982b |
0.189 |
|
| 2018 |
Garcia DC, Mohr BP, Dovgan JT, Hurst GB, Standaert RF, Doktycz MJ. Elucidating the potential of crude cell extracts for producing pyruvate from glucose. Synthetic Biology (Oxford, England). 3: ysy006. PMID 32995514 DOI: 10.1093/Synbio/Ysy006 |
0.188 |
|
| 2013 |
Hinestrosa JP, Sutton JE, Allison DP, Doktycz MJ, Messman JM, Retterer ST. Layer-by-layer templated assembly of silica at the nanoscale. Langmuir : the Acs Journal of Surfaces and Colloids. 29: 2193-9. PMID 23360298 DOI: 10.1021/La3042204 |
0.187 |
|
| 2003 |
Hoyt PR, Tack L, Jones BH, Van Dinther J, Staat S, Doktycz MJ. Automated high-throughput probe production for DNA microarray analysis. Biotechniques. 34: 402-7. PMID 12613263 DOI: 10.2144/03342MT05 |
0.186 |
|
| 2008 |
Hildebrand M, Doktycz MJ, Allison DP. Application of AFM in understanding biomineral formation in diatoms. PflüGers Archiv : European Journal of Physiology. 456: 127-37. PMID 18058126 DOI: 10.1007/S00424-007-0388-Y |
0.184 |
|
| 2013 |
Iyer S, Karig DK, Norred SE, Simpson ML, Doktycz MJ. Multi-input regulation and logic with T7 promoters in cells and cell-free systems. Plos One. 8: e78442. PMID 24194933 DOI: 10.1371/journal.pone.0078442 |
0.181 |
|
| 2010 |
Allison DP, Mortensen NP, Sullivan CJ, Doktycz MJ. Atomic force microscopy of biological samples Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology. 2: 618-634. PMID 20672388 DOI: 10.1002/wnan.104 |
0.18 |
|
| 2010 |
Srijanto BR, Retterer ST, Fowlkes JD, Doktycz MJ. Nanostructured silicon membranes for control of molecular transport. Journal of Vacuum Science and Technology. B, Nanotechnology & Microelectronics : Materials, Processing, Measurement, & Phenomena : Jvst B. 28: C6PC6P48-C6PC6P52. PMID 24932436 DOI: 10.1116/1.3518911 |
0.174 |
|
| 2018 |
Hasim S, Allison DP, Mendez B, Farmer AT, Pelletier DA, Retterer ST, Campagna SR, Reynolds TB, Doktycz MJ. Elucidating Duramycin's Bacterial Selectivity and Mode of Action on the Bacterial Cell Envelope. Frontiers in Microbiology. 9: 219. PMID 29491859 DOI: 10.3389/Fmicb.2018.00219 |
0.173 |
|
| 2008 |
Pelletier DA, Hurst GB, Foote LJ, Lankford PK, McKeown CK, Lu TY, Schmoyer DD, Shah MB, Hervey WJ, McDonald WH, Hooker BS, Cannon WR, Daly DS, Gilmore JM, Wiley HS, ... ... Doktycz MJ, et al. A general system for studying protein-protein interactions in Gram-negative bacteria. Journal of Proteome Research. 7: 3319-28. PMID 18590317 DOI: 10.1021/Pr8001832 |
0.171 |
|
| 2006 |
Van Berkel GJ, Ford MJ, Doktycz MJ, Kennel SJ. Evaluation of a surface-sampling probe electrospray mass spectrometry system for the analysis of surface-deposited and affinity-captured proteins. Rapid Communications in Mass Spectrometry : Rcm. 20: 1144-52. PMID 16521171 DOI: 10.1002/rcm.2428 |
0.171 |
|
| 2011 |
Karig DK, Siuti P, Dar RD, Retterer ST, Doktycz MJ, Simpson ML. Model for biological communication in a nanofabricated cell-mimic driven by stochastic resonance. Nano Communication Networks. 2: 39-49. PMID 21731597 DOI: 10.1016/J.Nancom.2011.03.001 |
0.17 |
|
| 2015 |
Timm CM, Campbell AG, Utturkar SM, Jun SR, Parales RE, Tan WA, Robeson MS, Lu TY, Jawdy S, Brown SD, Ussery DW, Schadt CW, Tuskan GA, Doktycz MJ, Weston DJ, et al. Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment. Frontiers in Microbiology. 6: 1118. PMID 26528266 DOI: 10.3389/Fmicb.2015.01118 |
0.17 |
|
| 2001 |
Steven Hicks J, Harker BW, Beattie KL, Doktycz MJ. Modification of an automated liquid-handling system for reagent-jet, nanoliter-level dispensing Biotechniques. 30: 878-885. PMID 11314270 DOI: 10.2144/01304RR05 |
0.169 |
|
| 2008 |
Betanzos-Cabrera G, Harker BW, Doktycz MJ, Weber JL, Beattie KL. A comparison of hybridization efficiency between flat glass and channel glass solid supports. Molecular Biotechnology. 38: 71-80. PMID 18095192 DOI: 10.1007/s12033-007-9001-z |
0.168 |
|
| 2012 |
Weston DJ, Pelletier DA, Morrell-Falvey JL, Tschaplinski TJ, Jawdy SS, Lu TY, Allen SM, Melton SJ, Martin MZ, Schadt CW, Karve AA, Chen JG, Yang X, Doktycz MJ, Tuskan GA. Pseudomonas fluorescens induces strain-dependent and strain-independent host plant responses in defense networks, primary metabolism, photosynthesis, and fitness. Molecular Plant-Microbe Interactions : Mpmi. 25: 765-78. PMID 22375709 DOI: 10.1094/Mpmi-09-11-0253 |
0.167 |
|
| 2017 |
Hurst GB, Asano KG, Doktycz CJ, Consoli EJ, Doktycz WL, Foster CM, Morrell-Falvey JL, Standaert RF, Doktycz MJ. Proteomics-Based Tools for Evaluation of Cell-Free Protein Synthesis. Analytical Chemistry. PMID 29039646 DOI: 10.1021/Acs.Analchem.7B02555 |
0.167 |
|
| 1993 |
Doktycz MJ, Arlinghaus HF, Allen RC, Jacobson KB. Electrophoresis and detection of tin-labeled DNAs on open-faced gels. Electrophoresis. 13: 521-8. PMID 1451687 DOI: 10.1002/ELPS.11501301108 |
0.165 |
|
| 2016 |
Utturkar SM, Cude WN, Robeson MS, Yang ZK, Klingeman DM, Land ML, Allman SL, Lu TS, Brown SD, Schadt CW, Podar M, Doktycz MJ, Pelletier DA. Enrichment of root endophytic bacteria from Populus deltoides and single-cell genomics analysis. Applied and Environmental Microbiology. PMID 27422831 DOI: 10.1128/Aem.01285-16 |
0.165 |
|
| 2012 |
Siuti P, Retterer ST, Choi CK, Doktycz MJ. Enzyme reactions in nanoporous, picoliter volume containers. Analytical Chemistry. 84: 1092-7. PMID 22148720 DOI: 10.1021/Ac202726N |
0.163 |
|
| 2006 |
Venkatraman S, Doktycz MJ, Qi H, Morrell-Falvey JL. Automated analysis of fluorescence microscopy images to identify protein-protein interactions. International Journal of Biomedical Imaging. 2006: 69851. PMID 23165043 DOI: 10.1155/Ijbi/2006/69851 |
0.163 |
|
| 2018 |
Timm CM, Carter KR, Carrell AA, Jun SR, Jawdy SS, Vélez JM, Gunter LE, Yang Z, Nookaew I, Engle NL, Lu TS, Schadt CW, Tschaplinski TJ, Doktycz MJ, Tuskan GA, et al. Abiotic Stresses Shift Belowground Populus-Associated Bacteria Toward a Core Stress Microbiome. Msystems. 3. PMID 29404422 DOI: 10.1128/mSystems.00070-17 |
0.162 |
|
| 2005 |
Sullivan CJ, Morrell JL, Allison DP, Doktycz MJ. Mounting of Escherichia coli spheroplasts for AFM imaging. Ultramicroscopy. 105: 96-102. PMID 16112809 DOI: 10.1016/j.ultramic.2005.06.023 |
0.161 |
|
| 2009 |
Hildebrand M, Holton G, Joy DC, Doktycz MJ, Allison DP. Diverse and conserved nano- and mesoscale structures of diatom silica revealed by atomic force microscopy. Journal of Microscopy. 235: 172-87. PMID 19659911 DOI: 10.1111/J.1365-2818.2009.03198.X |
0.161 |
|
| 2013 |
Kumar A, Karig D, Acharya R, Neethirajan S, Mukherjee PP, Retterer S, Doktycz MJ. Microscale confinement features can affect biofilm formation Microfluidics and Nanofluidics. 14: 895-902. DOI: 10.1007/S10404-012-1120-6 |
0.16 |
|
| 2008 |
Fletcher BL, Retterer ST, McKnight TE, Melechko AV, Fowlkes JD, Simpson ML, Doktycz MJ. Actuatable membranes based on polypyrrole-coated vertically aligned carbon nanofibers. Acs Nano. 2: 247-54. PMID 19206624 DOI: 10.1021/Nn700212K |
0.16 |
|
| 2018 |
Estenson K, Hurst GB, Standaert RF, Bible AN, Garcia D, Chourey K, Doktycz MJ, Morrell-Falvey JL. Characterization of indole-3-acetic acid biosynthesis and the effects of this phytohormone on the proteome of the plant-associated microbe Pantoea sp. YR343. Journal of Proteome Research. PMID 29464956 DOI: 10.1021/Acs.Jproteome.7B00708 |
0.159 |
|
| 2015 |
Polisetti S, Baig N, Bible A, Morrell-Falvey J, Doktycz M, Bohn PW. Using Raman spectroscopy and SERS for in situ studies of rhizosphere bacteria Proceedings of Spie - the International Society For Optical Engineering. 9550. DOI: 10.1117/12.2188647 |
0.159 |
|
| 2018 |
Blair PM, Land ML, Piatek MJ, Jacobson DA, Lu TS, Doktycz MJ, Pelletier DA. Exploration of the Biosynthetic Potential of the Microbiome. Msystems. 3. PMID 30320216 DOI: 10.1128/mSystems.00045-18 |
0.158 |
|
| 2003 |
McKnight TE, Melechko AV, Griffin GD, Guillorn MA, Merkulov VI, Serna F, Hensley DK, Doktycz MJ, Lowndes DH, Simpson ML. Intracellular integration of synthetic nanostructures with viable cells for controlled biochemical manipulation Nanotechnology. 14: 551-556. DOI: 10.1088/0957-4484/14/5/313 |
0.158 |
|
| 2012 |
Kumar A, Karig D, Neethirajan S, Suresh AK, Srijanto BR, Mukherjee PP, Retterer S, Doktycz MJ. Adhesion and formation of microbial biofilms in complex microfluidic devices Asme 2012 3rd International Conference On Micro/Nanoscale Heat and Mass Transfer, Mnhmt 2012. 79-84. DOI: 10.1115/MNHMT2012-75207 |
0.156 |
|
| 2006 |
Fowlkes JD, Hullander ED, Fletcher BL, Retterer ST, Melechko AV, Hensley DK, Simpson ML, Doktycz MJ. Molecular transport in a crowded volume created from vertically aligned carbon nanofibres: a fluorescence recovery after photobleaching study. Nanotechnology. 17: 5659-68. PMID 21727339 DOI: 10.1088/0957-4484/17/22/021 |
0.155 |
|
| 1998 |
Hurst GB, Weaver K, Doktycz MJ, Buchanan MV, Costello AM, Lidstrom ME. MALDI-TOF analysis of polymerase chain reaction products from methanotrophic bacteria. Analytical Chemistry. 70: 2693-8. PMID 9666732 DOI: 10.1021/Ac980044E |
0.155 |
|
| 2001 |
Kim Y, Hurst GB, Doktycz MJ, Buchanan MV. Improving spot homogeneity by using polymer substrates in matrix-assisted laser desorption/ionization mass spectrometry of oligonucleotides. Analytical Chemistry. 73: 2617-24. PMID 11403308 DOI: 10.1021/AC001392V |
0.154 |
|
| 2014 |
Tschaplinski TJ, Plett JM, Engle NL, Deveau A, Cushman KC, Martin MZ, Doktycz MJ, Tuskan GA, Brun A, Kohler A, Martin F. Populus trichocarpa and Populus deltoides exhibit different metabolomic responses to colonization by the symbiotic fungus Laccaria bicolor. Molecular Plant-Microbe Interactions : Mpmi. 27: 546-56. PMID 24548064 DOI: 10.1094/MPMI-09-13-0286-R |
0.154 |
|
| 2006 |
Dhindsa MS, Smith NR, Heikenfeld J, Rack PD, Fowlkes JD, Doktycz MJ, Melechko AV, Simpson ML. Reversible electrowetting of vertically aligned superhydrophobic carbon nanofibers. Langmuir : the Acs Journal of Surfaces and Colloids. 22: 9030-4. PMID 17014150 DOI: 10.1021/La061139B |
0.153 |
|
| 2002 |
Melechko AV, McKnight TE, Guillorn MA, Austin DW, Ilic B, Merkulov VI, Doktycz MJ, Lowndes DH, Simpson ML. Nanopipe fabrication using vertically aligned carbon nanofiber templates Journal of Vacuum Science and Technology B: Microelectronics and Nanometer Structures. 20: 2730-2733. DOI: 10.1116/1.1515306 |
0.151 |
|
| 2006 |
Chourey K, Thompson MR, Morrell-Falvey J, Verberkmoes NC, Brown SD, Shah M, Zhou J, Doktycz M, Hettich RL, Thompson DK. Global molecular and morphological effects of 24-hour chromium(VI) exposure on Shewanella oneidensis MR-1. Applied and Environmental Microbiology. 72: 6331-44. PMID 16957260 DOI: 10.1128/Aem.00813-06 |
0.151 |
|
| 2011 |
Suresh AK, Doktycz MJ, Wang W, Moon JW, Gu B, Meyer HM, Hensley DK, Allison DP, Phelps TJ, Pelletier DA. Monodispersed biocompatible silver sulfide nanoparticles: facile extracellular biosynthesis using the γ-proteobacterium, Shewanella oneidensis. Acta Biomaterialia. 7: 4253-8. PMID 21798382 DOI: 10.1016/J.Actbio.2011.07.007 |
0.15 |
|
| 2013 |
Wang W, Nallathamby PD, Foster CM, Morrell-Falvey JL, Mortensen NP, Doktycz MJ, Gu B, Retterer ST. Volume labeling with Alexa Fluor dyes and surface functionalization of highly sensitive fluorescent silica (SiO2) nanoparticles. Nanoscale. 5: 10369-75. PMID 24056530 DOI: 10.1039/C3Nr02639F |
0.15 |
|
| 2003 |
McKnight TE, Melechko AV, Guillorn MA, Merkulov VI, Doktycz MJ, Culbertson CT, Jacobson SC, Lowndes DH, Simpson ML. Effects of microfabrication processing on the electrochemistry of carbon nanofiber electrodes Journal of Physical Chemistry B. 107: 10722-10728. DOI: 10.1021/Jp034872+ |
0.149 |
|
| 2011 |
Edwards AN, Siuti P, Bible AN, Alexandre G, Retterer ST, Doktycz MJ, Morrell-Falvey JL. Characterization of cell surface and extracellular matrix remodeling of Azospirillum brasilense chemotaxis-like 1 signal transduction pathway mutants by atomic force microscopy. Fems Microbiology Letters. 314: 131-9. PMID 21105907 DOI: 10.1111/J.1574-6968.2010.02156.X |
0.148 |
|
| 1995 |
Doktycz MJ, Hurst GB, Habibi-Goudarzi S, McLuckey SA, Tang K, Chen CH, Uziel M, Jacobson KB, Woychik RP, Buchanan MV. Analysis of polymerase chain reaction-amplified DNA products by mass spectrometry using matrix-assisted laser desorption and electrospray: current status. Analytical Biochemistry. 230: 205-14. PMID 7503409 DOI: 10.1006/Abio.1995.1465 |
0.148 |
|
| 2006 |
Venkataraman S, Allison DP, Qi H, Morrell-Falvey JL, Kallewaard NL, Crowe JE, Doktycz MJ. Automated image analysis of atomic force microscopy images of rotavirus particles. Ultramicroscopy. 106: 829-37. PMID 16730407 DOI: 10.1016/J.Ultramic.2006.01.014 |
0.147 |
|
| 1997 |
Hurst GB, Doktycz MJ, Vass AA, Buchanan MV. Detection of bacterial DNA polymerase chain reaction products by matrix-assisted laser desorption/ionization mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 10: 377-82. PMID 8949484 DOI: 10.1002/(SICI)1097-0231(199602)10:3<377::AID-RCM481>3.0.CO;2-X |
0.147 |
|
| 2009 |
Kalyanaraman M, Retterer ST, McKnight TE, Ericson MN, Allman SL, Elkins JG, Palumbo AV, Keller M, Doktycz MJ. Controlled microfluidic production of alginate beads for in situ encapsulation of microbes 2009 1st Annual Ornl Biomedical Science and Engineering Conference, Bsec 2009. DOI: 10.1109/BSEC.2009.5090482 |
0.146 |
|
| 2002 |
Zhang L, Melechko AV, Merkulov VI, Guillorn MA, Simpson ML, Lowndes DH, Doktycz MJ. Controlled transport of latex beads through vertically aligned carbon nanofiber membranes Applied Physics Letters. 81: 135-137. DOI: 10.1063/1.1490142 |
0.146 |
|
| 2008 |
Allison DP, Dufrêne YF, Doktycz MJ, Hildebrand M. Biomineralization at the nanoscale learning from diatoms. Methods in Cell Biology. 90: 61-86. PMID 19195546 DOI: 10.1016/S0091-679X(08)00804-2 |
0.146 |
|
| 2008 |
Betanzos-Cabrera G, Harker BW, Doktycz MJ, Weber JL, Beattie KL. Channel glass-based detection of human short insertion/deletion polymorphisms by tandem hybridization. Molecular Biotechnology. 38: 145-53. PMID 18219594 DOI: 10.1007/s12033-007-9004-9 |
0.146 |
|
| 2003 |
Doktycz MJ, Sullivan CJ, Hoyt PR, Pelletier DA, Wu S, Allison DP. AFM imaging of bacteria in liquid media immobilized on gelatin coated mica surfaces Ultramicroscopy. 97: 209-216. PMID 12801673 DOI: 10.1016/S0304-3991(03)00045-7 |
0.145 |
|
| 2003 |
Melechko AV, McKnight TE, Guillorn MA, Merkulov VI, Ilic B, Doktycz MJ, Lowndes DH, Simpson ML. Vertically aligned carbon nanofibers as sacrificial templates for nanofluidic structures Applied Physics Letters. 82: 976-978. DOI: 10.1063/1.1544058 |
0.144 |
|
| 2016 |
Timm AC, Shankles PG, Foster CM, Doktycz MJ, Retterer ST. Microreactors: Toward Microfluidic Reactors for Cell-Free Protein Synthesis at the Point-of-Care (Small 6/2016). Small (Weinheim An Der Bergstrasse, Germany). 12: 690. PMID 26848723 DOI: 10.1002/Smll.201670027 |
0.144 |
|
| 2008 |
Retterer ST, Melechko A, Hensley DK, Simpson ML, Doktycz MJ. Positional control of catalyst nanoparticles for the synthesis of high density carbon nanofiber arrays. Carbon. 46: 1378-1383. PMID 19448842 DOI: 10.1016/J.Carbon.2008.05.012 |
0.143 |
|
| 2006 |
Allison DP, Doktycz MJ. Cellular secretion studied by force microscopy. Journal of Cellular and Molecular Medicine. 10: 847-56. PMID 17125589 DOI: 10.1111/j.1582-4934.2006.tb00529.x |
0.142 |
|
| 2011 |
Suresh AK, Pelletier DA, Wang W, Broich ML, Moon JW, Gu B, Allison DP, Joy DC, Phelps TJ, Doktycz MJ. Biofabrication of discrete spherical gold nanoparticles using the metal-reducing bacterium Shewanella oneidensis. Acta Biomaterialia. 7: 2148-52. PMID 21241833 DOI: 10.1016/J.Actbio.2011.01.023 |
0.141 |
|
| 2020 |
Vijaya Kumar S, Abraham PE, Hurst GB, Chourey K, Bible AN, Hettich RL, Doktycz MJ, Morrell-Falvey JL. A carotenoid-deficient mutant of the plant-associated microbe Pantoea sp. YR343 displays an altered membrane proteome. Scientific Reports. 10: 14985. PMID 32917935 DOI: 10.1038/s41598-020-71672-w |
0.14 |
|
| 2007 |
Fletcher BL, McKnight TE, Fowlkes JD, Allison DP, Simpson ML, Doktycz MJ. Controlling the Dimensions of Carbon Nanofiber Structures through the Electropolymerization of Pyrrole. Synthetic Metals. 157: 282-289. PMID 18431459 DOI: 10.1016/j.synthmet.2007.03.004 |
0.136 |
|
| 2010 |
Suresh AK, Pelletier DA, Wang W, Moon JW, Gu B, Mortensen NP, Allison DP, Joy DC, Phelps TJ, Doktycz MJ. Silver nanocrystallites: biofabrication using Shewanella oneidensis, and an evaluation of their comparative toxicity on gram-negative and gram-positive bacteria. Environmental Science & Technology. 44: 5210-5. PMID 20509652 DOI: 10.1021/Es903684R |
0.135 |
|
| 2001 |
Hoyt PR, Doktycz MJ, Warmack RJ, Allison DP. Spin-column isolation of DNA-protein interactions from complex protein mixtures for AFM imaging. Ultramicroscopy. 86: 139-43. PMID 11215616 DOI: 10.1016/S0304-3991(00)00074-7 |
0.134 |
|
| 2014 |
Hansen RR, Shubert KR, Morrell-Falvey JL, Lokitz BS, Doktycz MJ, Retterer ST. Microstructured block copolymer surfaces for control of microbe adhesion and aggregation. Biosensors. 4: 63-75. PMID 25587410 DOI: 10.3390/Bios4010063 |
0.134 |
|
| 2015 |
Jun SR, Wassenaar TM, Nookaew I, Hauser L, Wanchai V, Land M, Timm C, Lu TS, Schadt CW, Doktycz MJ, Pelletier DA, Ussery DW. Comparative genome analysis of Pseudomonas genomes including Populus-associated isolates. Applied and Environmental Microbiology. PMID 26519390 DOI: 10.1128/Aem.02612-15 |
0.133 |
|
| 2013 |
Mortensen NP, Boisen N, Carey S, Kennel SJ, Fowlkes JD, Doktycz MJ, Nataro JP, Allison DP. Enteroaggregative Escherichia coli: surface protein dispersin increases bacterial uptake of ciprofloxacin. International Journal of Antimicrobial Agents. 42: 462-5. PMID 24011504 DOI: 10.1016/J.Ijantimicag.2013.07.007 |
0.133 |
|
| 2018 |
Aufrecht JA, Timm CM, Bible A, Morrell-Falvey JL, Pelletier DA, Doktycz MJ, Retterer ST. Microfluidics: Quantifying the Spatiotemporal Dynamics of Plant Root Colonization by Beneficial Bacteria in a Microfluidic Habitat (Adv. Biosys. 6/2018) Advanced Biosystems. 2: 1870051. DOI: 10.1002/ADBI.201870051 |
0.131 |
|
| 2014 |
Iyer S, Doktycz MJ. Thrombin-mediated transcriptional regulation using DNA aptamers in DNA-based cell-free protein synthesis. Acs Synthetic Biology. 3: 340-6. PMID 24059754 DOI: 10.1021/sb4000756 |
0.13 |
|
| 2013 |
Suresh AK, Pelletier DA, Doktycz MJ. Relating nanomaterial properties and microbial toxicity. Nanoscale. 5: 463-74. PMID 23203029 DOI: 10.1039/C2Nr32447D |
0.129 |
|
| 2015 |
Nallathamby PD, Mortensen NP, Palko HA, Malfatti M, Smith C, Sonnett J, Doktycz MJ, Gu B, Roeder RK, Wang W, Retterer ST. New surface radiolabeling schemes of super paramagnetic iron oxide nanoparticles (SPIONs) for biodistribution studies. Nanoscale. 7: 6545-55. PMID 25790032 DOI: 10.1039/C4Nr06441K |
0.128 |
|
| 2011 |
Siuti P, Green C, Edwards AN, Doktycz MJ, Alexandre G. The chemotaxis-like Che1 pathway has an indirect role in adhesive cell properties of Azospirillum brasilense Fems Microbiology Letters. 323: 105-112. PMID 22092709 DOI: 10.1111/J.1574-6968.2011.02366.X |
0.126 |
|
| 2009 |
Fletcher BL, Fern JT, Rhodes K, McKnight TE, Fowlkes JD, Retterer ST, Keffer DJ, Simpson ML, Doktycz MJ. Effects of ultramicroelectrode dimensions on the electropolymerization of polypyrrole. Journal of Applied Physics. 105: 124312. PMID 19657404 DOI: 10.1063/1.3152633 |
0.123 |
|
| 2016 |
Bible AN, Fletcher SJ, Pelletier DA, Schadt CW, Jawdy SS, Weston DJ, Engle NL, Tschaplinski T, Masyuko R, Polisetti S, Bohn PW, Coutinho TA, Doktycz MJ, Morrell-Falvey JL. A Carotenoid-Deficient Mutant in Pantoea sp. YR343, a Bacteria Isolated from the Rhizosphere of Populus deltoides, Is Defective in Root Colonization. Frontiers in Microbiology. 7: 491. PMID 27148182 DOI: 10.3389/Fmicb.2016.00491 |
0.122 |
|
| 2006 |
Beckmann MA, Venkataraman S, Doktycz MJ, Nataro JP, Sullivan CJ, Morrell-Falvey JL, Allison DP. Measuring cell surface elasticity on enteroaggregative Escherichia coli wild type and dispersin mutant by AFM. Ultramicroscopy. 106: 695-702. PMID 16682120 DOI: 10.1016/J.Ultramic.2006.02.006 |
0.122 |
|
| 2008 |
Fowlkes JD, Fletcher BL, Retterer ST, Melechko AV, Simpson ML, Doktycz MJ. Size-selectivity and anomalous subdiffusion of nanoparticles through carbon nanofiber-based membranes. Nanotechnology. 19. PMID 21394229 DOI: 10.1088/0957-4484/19/41/415301 |
0.121 |
|
| 2005 |
Venkataraman S, Morrell-Falvey J, Doktycz M, Qi H. Automated Image Analysis of Fluorescence Microscopic Images to Identify Protein-protein Interactions. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 797-800. PMID 17282304 DOI: 10.1109/IEMBS.2005.1616535 |
0.118 |
|
| 2005 |
Venkataraman S, Morrell-Falvey J, Doktycz M, Qi H. Automated Image Analysis of Fluorescence Microscopic Images to Identify Protein-protein Interactions. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 4: 4437-40. PMID 17281221 DOI: 10.1109/IEMBS.2005.1615451 |
0.118 |
|
| 2011 |
Mortensen NP, Fowlkes JD, Maggart M, Doktycz MJ, Nataro JP, Drusano G, Allison DP. Effects of sub-minimum inhibitory concentrations of ciprofloxacin on enteroaggregative Escherichia coli and the role of the surface protein dispersin. International Journal of Antimicrobial Agents. 38: 27-34. PMID 21570813 DOI: 10.1016/J.Ijantimicag.2011.03.011 |
0.116 |
|
| 2016 |
Hasim S, Allison DP, Retterer ST, Hopke A, Wheeler RT, Doktycz MJ, Reynolds TB. ß-glucan unmasking in some Candida albicans mutants correlates with increases in cell wall surface roughness and decreases in cell wall elasticity. Infection and Immunity. PMID 27849179 DOI: 10.1128/Iai.00601-16 |
0.115 |
|
| 2004 |
Hoyt PR, Doktycz MJ. Optimized beadmilling of tissues for high-throughput RNA production and microarray-based analyses. Analytical Biochemistry. 332: 100-8. PMID 15301954 DOI: 10.1016/j.ab.2004.04.025 |
0.113 |
|
| 2018 |
Aufrecht JA, Timm CM, Bible A, Morrell-Falvey JL, Pelletier DA, Doktycz MJ, Retterer ST. Quantifying the Spatiotemporal Dynamics of Plant Root Colonization by Beneficial Bacteria in a Microfluidic Habitat Advanced Biosystems. 2: 1800048. DOI: 10.1002/ADBI.201800048 |
0.113 |
|
| 2004 |
Morrell JL, Sullivan CJ, Hoyt PR, Allison DP, Doktycz MJ. Characterization of protein interactions and glucose transport in E. coli using live cell imaging Microscopy and Microanalysis. 10: 1542-1543. DOI: 10.1017/S1431927604885258 |
0.111 |
|
| 2017 |
Anunciado DB, Nguyen VP, Hurst GB, Doktycz MJ, Urban VS, Langan P, Mamontov E, O'Neill HM. In vivo Protein Dynamics on the Nanometer Length Scale and Nanosecond Time Scale. The Journal of Physical Chemistry Letters. PMID 28388043 DOI: 10.1021/acs.jpclett.7b00399 |
0.111 |
|
| 2020 |
Mou Z, Eakes J, Cooper CJ, Foster CM, Standaert RF, Podar M, Doktycz MJ, Parks JM. Machine Learning-based Prediction of Enzyme Substrate Scope: Application to Bacterial Nitrilases. Proteins. PMID 33118210 DOI: 10.1002/prot.26019 |
0.111 |
|
| 1993 |
Doktycz MJ. Discontinuous electrophoresis of DNA: adjusting DNA mobility by trailing ion net mobility. Analytical Biochemistry. 213: 400-6. PMID 8238917 DOI: 10.1006/ABIO.1993.1438 |
0.111 |
|
| 2009 |
Mortensen NP, Fowlkes JD, Sullivan CJ, Allison DP, Larsen NB, Molin S, Doktycz MJ. Effects of colistin on surface ultrastructure and nanomechanics of pseudomonas aeruginosa cells Langmuir. 25: 3728-3733. PMID 19227989 DOI: 10.1021/la803898g |
0.11 |
|
| 2003 |
Hoyt PR, Doktycz MJ, Beattie KL, Greeley MS. DNA Microarrays Detect 4-Nonylphenol-induced Alterations in Gene Expression during Zebrafish Early Development Ecotoxicology. 12: 469-474. PMID 14680326 DOI: 10.1023/B:ECTX.0000003032.14044.c8 |
0.11 |
|
| 2004 |
Doktycz MJ, Johnson JE, Cornett MJ. Hybrid valve structure for high-throughput, low-volume liquid-handling applications Jala - Journal of the Association For Laboratory Automation. 9: 250-256. DOI: 10.1016/j.jala.2004.04.019 |
0.109 |
|
| 2003 |
Reyes-López MA, Méndez-Tenorio A, Maldonado-Rodríguez R, Doktycz MJ, Fleming JT, Beattie KL. Fingerprinting of prokaryotic 16S rRNA genes using oligodeoxyribonucleotide microarrays and virtual hybridization Nucleic Acids Research. 31: 779-789. PMID 12527788 DOI: 10.1093/nar/gkg132 |
0.108 |
|
| 2019 |
Kumar SV, Taylor G, Hasim S, Collier CP, Farmer AT, Campagna SR, Bible AN, Doktycz MJ, Morrell-Falvey J. Loss of carotenoids from membranes of Pantoea sp. YR343 results in altered lipid composition and changes in membrane biophysical properties. Biochimica Et Biophysica Acta. Biomembranes. PMID 31095944 DOI: 10.1016/J.Bbamem.2019.05.009 |
0.108 |
|
| 1994 |
Doktycz MJ, Paner TM, Benight AS. Studies of DNA dumbbells. IV. Preparation and melting of a DNA dumbbell with the 16 base-pair sequence 5'G-T-A-T-C-C-C-T-C-T-G-G-A-T-A-C3' linked on the ends by dodecyl chains. Biopolymers. 33: 1765-77. PMID 8268405 DOI: 10.1002/Bip.360331203 |
0.106 |
|
| 1999 |
Subramanian A, Kennel SJ, Oden PI, Jacobson K, Woodward J, Doktycz MJ. Comparison of techniques for enzyme immobilization on silicon supports Enzyme and Microbial Technology. 24: 26-34. DOI: 10.1016/S0141-0229(98)00084-2 |
0.105 |
|
| 2012 |
Suresh AK, Pelletier DA, Wang W, Morrell-Falvey JL, Gu B, Doktycz MJ. Cytotoxicity induced by engineered silver nanocrystallites is dependent on surface coatings and cell types. Langmuir : the Acs Journal of Surfaces and Colloids. 28: 2727-35. PMID 22216981 DOI: 10.1021/La2042058 |
0.105 |
|
| 2016 |
Hansen RR, Timm AC, Timm CM, Bible AN, Morrell-Falvey JL, Pelletier DA, Simpson ML, Doktycz MJ, Retterer ST. Correction: Stochastic Assembly of Bacteria in Microwell Arrays Reveals the Importance of Confinement in Community Development. Plos One. 11: e0160135. PMID 27441627 DOI: 10.1371/journal.pone.0160135 |
0.104 |
|
| 1998 |
Doktycz MJ, Larimer FW, Pastrnak M, Stevens A. Comparative analyses of the secondary structures of synthetic and intracellular yeast MFA2 mRNAs. Proceedings of the National Academy of Sciences of the United States of America. 95: 14614-21. PMID 9843938 DOI: 10.1073/Pnas.95.25.14614 |
0.102 |
|
| 1994 |
Doktycz MJ, Habibi-Goudarzi S, McLuckey SA. Accumulation and storage of ionized duplex DNA molecules in a quadrupole ion trap. Analytical Chemistry. 66: 3416-22. PMID 7978315 DOI: 10.1021/Ac00092A019 |
0.1 |
|
| 1995 |
Doktycz MJ, Morris MD, Dormady SJ, Beattie KL, Jacobson KB. Optical melting of 128 octamer DNA duplexes. Effects of base pair location and nearest neighbors on thermal stability. The Journal of Biological Chemistry. 270: 8439-45. PMID 7721738 DOI: 10.1074/jbc.270.15.8439 |
0.1 |
|
| 2015 |
Suresh AK, Pelletier DA, Moon JW, Phelps T, Doktycz MJ. Size-Separation of Silver Nanoparticles Using Sucrose Gradient Centrifugation Journal of Chromatography & Separation Techniques. 6: 1-5. DOI: 10.4172/2157-7064.1000283 |
0.097 |
|
| 1997 |
Allison DP, Kerper PS, Doktycz MJ, Thundat T, Modrich P, Larimer FW, Johnson DK, Hoyt PR, Mucenski ML, Warmack RJ. Mapping individual cosmid DNAs by direct AFM imaging Genomics. 41: 379-384. PMID 9169135 DOI: 10.1006/Geno.1997.4686 |
0.096 |
|
| 2005 |
Fowlkes JD, Fletcher BL, Hullander ED, Klein KL, Hensley DK, Melechko AV, Simpson ML, Doktycz MJ. Tailored transport through vertically aligned carbon nanofibre membranes; Controlled synthesis, modelling, and passive diffusion experiments Nanotechnology. 16: 3101-3109. DOI: 10.1088/0957-4484/16/12/063 |
0.087 |
|
| 1996 |
Allison DP, Kerper PS, Doktycz MJ, Spain JA, Modrich P, Larimer FW, Thundat T, Warmack RJ. Direct atomic force microscope imaging of EcoRI endonuclease site specifically bound to plasmid DNA molecules Proceedings of the National Academy of Sciences of the United States of America. 93: 8826-8829. PMID 8799111 DOI: 10.1073/Pnas.93.17.8826 |
0.087 |
|
| 1990 |
Doktycz MJ, Paner TM, Amaratunga M, Benight AS. Thermodynamic stability of the 5' dangling-ended DNA hairpins formed from sequences 5'-(XY)2GGATAC(T)4GTATCC-3', where X, Y = A, T, G, C. Biopolymers. 30: 829-45. PMID 2275982 DOI: 10.1002/Bip.360300718 |
0.086 |
|
| 1992 |
Doktycz MJ, Goldstein RF, Paner TM, Gallo FJ, Benight AS. Studies of DNA dumbbells. I. Melting curves of 17 DNA dumbbells with different duplex stem sequences linked by T4 endloops: Evaluation of the nearest-neighbor stacking interactions in DNA Biopolymers. 32: 849-864. PMID 1391634 DOI: 10.1002/Bip.360320712 |
0.086 |
|
| 2000 |
Hoyt PR, Doktycz MJ, Modrich P, Warmack RJ, Allison DP. Identifying sequence similarities between DNA molecules Ultramicroscopy. 82: 237-244. PMID 10741675 DOI: 10.1016/S0304-3991(99)00153-9 |
0.082 |
|
| 2014 |
Utturkar SM, Klingeman DM, Land ML, Schadt CW, Doktycz MJ, Pelletier DA, Brown SD. Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences. Bioinformatics (Oxford, England). 30: 2709-16. PMID 24930142 DOI: 10.1093/Bioinformatics/Btu391 |
0.077 |
|
| 1993 |
Sheardy RD, Suh D, Kurzinsky R, Doktycz MJ, Benight AS, Chaires JB. Sequence dependence of the free energy of B-Z junction formation in deoxyoligonucleotides Journal of Molecular Biology. 231: 475-488. PMID 8510158 DOI: 10.1006/Jmbi.1993.1295 |
0.075 |
|
| 1990 |
Paner TM, Amaratunga M, Doktycz MJ, Benight AS. Analysis of melting transitions of the DNA hairpins formed from the oligomer sequences d[GGATAC(X)4GTATCC] (X = A, T, G, C). Biopolymers. 29: 1715-34. PMID 2207283 DOI: 10.1002/Bip.360291405 |
0.072 |
|
| 2003 |
Rusch TL, Dickinson W, Che J, Fieweger K, Chudyk J, Doktycz MJ, Yu A, Weber JL. Updated Instrumentation for Continuous Array Genotyping of Short Insertion/Deletion Polymorphisms Annual International Conference of the Ieee Engineering in Medicine and Biology - Proceedings. 4: 3582-3585. |
0.071 |
|
| 2003 |
Rusch TL, Dickinson W, Che J, Fieweger K, Chudyk J, Doktycz MJ, Yu A, Weber JL. Instrumentation for continuous array genotyping of short insertion/deletion polymorphisms Proceedings of Spie - the International Society For Optical Engineering. 4966: 138-145. DOI: 10.1117/12.483474 |
0.07 |
|
| 1993 |
Paner TM, Gallo FJ, Doktycz MJ, Benight AS. Studies of DNA dumbbells. V. A DNA triplex formed between a 28 base-pair DNA dumbbell substrate and a 16 base linear single strand Biopolymers. 33: 1779-1789. PMID 8268406 DOI: 10.1002/Bip.360331204 |
0.07 |
|
| 2011 |
Kumar A, Mortensen NP, Mukherjee PP, Retterer ST, Doktycz MJ. Electric field induced bacterial flocculation of enteroaggregative Escherichia coli 042 Applied Physics Letters. 98. DOI: 10.1063/1.3600648 |
0.07 |
|
| 2006 |
Fowlkes JD, Melechko AV, Klein KL, Rack PD, Smith DA, Hensley DK, Doktycz MJ, Simpson ML. Control of catalyst particle crystallographic orientation in vertically aligned carbon nanofiber synthesis Carbon. 44: 1503-1510. DOI: 10.1016/J.Carbon.2005.12.010 |
0.069 |
|
| 2018 |
Garcia DC, Mohr BP, Dovgan JT, Hurst GB, Standaert RF, Doktycz MJ. Elucidating the potential of crude cell extracts for producing pyruvate from glucose Synthetic Biology. 3. DOI: 10.1093/SYNBIO/YSY006 |
0.069 |
|
| 2006 |
Fletcher BL, McKnight TE, Melechko AV, Simpson ML, Doktycz MJ. Biochemical functionalization of vertically aligned carbon nanofibres Nanotechnology. 17: 2032-2039. DOI: 10.1088/0957-4484/17/8/041 |
0.062 |
|
| 2012 |
Brown SD, Klingeman DM, Lu TY, Johnson CM, Utturkar SM, Land ML, Schadt CW, Doktycz MJ, Pelletier DA. Draft genome sequence of Rhizobium sp. strain PDO1-076, a bacterium isolated from Populus deltoides. Journal of Bacteriology. 194: 2383-4. PMID 22493196 DOI: 10.1128/Jb.00198-12 |
0.061 |
|
| 2012 |
Brown SD, Utturkar SM, Klingeman DM, Johnson CM, Martin SL, Land ML, Lu TY, Schadt CW, Doktycz MJ, Pelletier DA. Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides. Journal of Bacteriology. 194: 5991-3. PMID 23045501 DOI: 10.1128/Jb.01243-12 |
0.059 |
|
| 2004 |
Allison DP, Sullivan CJ, Morrell JL, Hoyt PR, Doktycz MJ. Atomic Force Microscopy (AFM) imaging and force recognition at the molecular level in bacteria Microscopy and Microanalysis. 10: 1094-1095. DOI: 10.1017/S1431927604885349 |
0.058 |
|
| 1990 |
Doktycz MJ, Benight AS, Sheardy RD. Energetics of B-Z junction formation in a sixteen base-pair duplex DNA. Journal of Molecular Biology. 212: 3-6. PMID 2319599 DOI: 10.1016/0022-2836(90)90297-Y |
0.048 |
|
| 2012 |
Iyer S, Doktycz MJ. Multilayered nanoparticles for siRNA delivery. Nanomedicine (London, England). 7: 1653-4. PMID 23346569 |
0.044 |
|
| 2007 |
Liu Y, Das S, Olszewski RE, Carpenter DA, Culiat CT, Sundberg JP, Soteropoulos P, Liu X, Doktycz MJ, Michaud EJ, Voy BH. The near-naked hairless (Hr(N)) mutation disrupts hair formation but is not due to a mutation in the Hairless coding region. The Journal of Investigative Dermatology. 127: 1605-14. PMID 17330134 DOI: 10.1038/Sj.Jid.5700755 |
0.035 |
|
| 2002 |
Subramanian A, Oden PI, Kennel SJ, Jacobson KB, Warmack RJ, Thundat T, Doktycz MJ. Glucose biosensing using an enzyme-coated microcantilever Applied Physics Letters. 81: 385-387. DOI: 10.1063/1.1492308 |
0.033 |
|
| 1993 |
Thundat T, Allison DP, Warmack RJ, Doktycz MJ, Jacobson KB, Brown GM. Atomic force microscopy of single‐ and double‐stranded deoxyribonucleic acid Journal of Vacuum Science & Technology a: Vacuum, Surfaces, and Films. 11: 824-828. DOI: 10.1116/1.578312 |
0.033 |
|
| 2012 |
Iyer S, Doktycz MJ. Nanozymes for antiviral therapy. Nanomedicine (London, England). 7: 1654-5. PMID 23346571 |
0.019 |
|
| 2012 |
Iyer S, Doktycz MJ. Rationally designed vaccines. Nanomedicine (London, England). 7: 1654. PMID 23346570 |
0.014 |
|
| 2012 |
Iyer S, Doktycz MJ. Shear-activated nanotherapeutics. Nanomedicine (London, England). 7: 1653. PMID 23210713 DOI: 10.2217/nnm.12.148 |
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