Gene Yu - Publications

Affiliations: 
2011-2019 Duke University, Durham, NC 

27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Pham DJ, Yu GJ, Bouteiller JC, Berger TW. Bridging Hierarchies in Multi-Scale Models of Neural Systems: Look-Up Tables Enable Computationally Efficient Simulations of Non-linear Synaptic Dynamics. Frontiers in Computational Neuroscience. 15: 733155. PMID 34658827 DOI: 10.3389/fncom.2021.733155  0.61
2020 Yu GJ, Bouteiller JC, Berger TW. Topographic Organization of Correlation Along the Longitudinal and Transverse Axes in Rat Hippocampal CA3 Due to Excitatory Afferents. Frontiers in Computational Neuroscience. 14: 588881. PMID 33328947 DOI: 10.3389/fncom.2020.588881  0.566
2020 Mergenthal A, Bouteiller JC, Yu GJ, Berger TW. A Computational Model of the Cholinergic Modulation of CA1 Pyramidal Cell Activity. Frontiers in Computational Neuroscience. 14: 75. PMID 33013341 DOI: 10.3389/Fncom.2020.00075  0.548
2020 Chou ZZ, Yu GJ, Berger TW. Generation of Granule Cell Dendritic Morphologies by Estimating the Spatial Heterogeneity of Dendritic Branching. Frontiers in Computational Neuroscience. 14: 23. PMID 32327990 DOI: 10.3389/fncom.2020.00023  0.538
2019 Yu GJ, Feng Z, Berger TW. Network Activity Due to Topographic Organization of Schaffer Collaterals in a Large-Scale Model of Rat CA1. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2019: 2977-2980. PMID 31946514 DOI: 10.1109/EMBC.2019.8856799  0.597
2019 Yu GJ, Bouteiller JC, Song D, Berger TW. Axonal Anatomy Optimizes Spatial Encoding in the Rat Entorhinal-Dentate System: A Computational Study. Ieee Transactions On Bio-Medical Engineering. PMID 30676938 DOI: 10.1109/Tbme.2019.2894410  0.606
2018 Yu GJ, Bouteiller JC, Song D, Berger TW. Decoding Position to Analyze Spatial Information Encoding in a Large-Scale Neuronal Network Model of Rat Dentate Gyrus. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2018: 6137-6140. PMID 30441735 DOI: 10.1109/EMBC.2018.8513576  0.637
2018 Hu EY, Yu G, Song D, Jean-Marie Bouteiller C, Theodore Berger W. Modeling Nonlinear Synaptic Dynamics: A Laguerre-Volterra Network Framework for Improved Computational Efficiency in Large Scale Simulations. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2018: 6129-6132. PMID 30441733 DOI: 10.1109/EMBC.2018.8513616  0.553
2018 Chou ZZ, Yu GJ, Berger TW. Point Process Filtering Estimates of Branching Rate for Neural Dendritic Morphology Generation. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2018: 5854-5857. PMID 30441667 DOI: 10.1109/EMBC.2018.8513682  0.496
2018 Bingham CS, Loizos K, Yu GJ, Gilbert A, Bouteiller JC, Song D, Lazzi G, Berger TW. Model-Based Analysis of Electrode Placement and Pulse Amplitude for Hippocampal Stimulation. Ieee Transactions On Bio-Medical Engineering. PMID 29993519 DOI: 10.1109/Tbme.2018.2791860  0.591
2016 Yu GJ, Dong Song, Berger TW. Place field detection using grid-based clustering in a large-scale computational model of the rat dentate gyrus. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2016: 1405-1408. PMID 28268589 DOI: 10.1109/EMBC.2016.7590971  0.547
2016 Bingham CS, Loizos K, Yu G, Gilbert A, Bouteiller JM, Song D, Lazzi G, Berger TW, Bingham CS, Loizos K, Gene Yu, Gilbert A, Bouteiller JM, Dong Song, Lazzi G, ... ... Yu G, et al. A large-scale detailed neuronal model of electrical stimulation of the dentate gyrus and perforant path as a platform for electrode design and optimization. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2016: 2794-2797. PMID 28227099 DOI: 10.1109/EMBC.2016.7591310  0.653
2016 Yu GJ, Song D, Berger TW, Yu GJ, Dong Song, Berger TW, Song D, Yu GJ, Berger TW. Place field detection using grid-based clustering in a large-scale computational model of the rat dentate gyrus. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2016: 1405-1408. PMID 28226767 DOI: 10.1109/EMBC.2016.7590971  0.636
2015 Hendrickson PJ, Yu GJ, Dong Song, Berger TW. A million-plus neuron model of the hippocampal dentate gyrus: Dependency of spatio-temporal network dynamics on topography. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2015: 4713-6. PMID 26737346 DOI: 10.1109/EMBC.2015.7319446  0.808
2015 Yu GJ, Hendrickson PJ, Dong Song, Berger TW. Topography-dependent spatio-temporal correlations in the entorhinal-dentate-CA3 circuit in a large-scale computational model of the Rat Hippocampus. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2015: 3965-8. PMID 26737162 DOI: 10.1109/EMBC.2015.7319262  0.785
2015 Hendrickson PJ, Yu GJ, Song D, Berger TW. Interactions between Inhibitory Interneurons and Excitatory Associational Circuitry in Determining Spatio-Temporal Dynamics of Hippocampal Dentate Granule Cells: A Large-Scale Computational Study. Frontiers in Systems Neuroscience. 9: 155. PMID 26635545 DOI: 10.3389/fnsys.2015.00155  0.801
2015 Hendrickson P, Yu G, Song D, Berger T. A Million-Plus Neuron Model of the Hippocampal Dentate Gyrus: Critical Role for Topography in Determining Spatio-Temporal Network Dynamics. Ieee Transactions On Bio-Medical Engineering. PMID 26087482 DOI: 10.1109/TBME.2015.2445771  0.802
2015 Gilbert A, Loizos K, Yu G, Hendrickson P, Lazzi G, Berger T. Optimizing electrode placement using a multiscale model of the hippocampus 2015 Usnc-Ursi Radio Science Meeting (Joint With Ap-S Symposium), Usnc-Ursi 2015 - Proceedings. 313. DOI: 10.1109/USNC-URSI.2015.7303597  0.73
2015 Cline JW, Bingham C, Loizos K, Yu G, Hendrickson P, Bouteiller JM, Berger T, Lazzi G. Estimation of initiated local field potential by neurons in heterogeneous tissue environment using admittance method 2015 Usnc-Ursi Radio Science Meeting (Joint With Ap-S Symposium), Usnc-Ursi 2015 - Proceedings. 310. DOI: 10.1109/USNC-URSI.2015.7303594  0.746
2014 Yu G, Song D, Berger TW. Implementation of the excitatory entorhinal-dentate-CA3 topography in a large-scale computational model of the rat hippocampus. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2014: 6581-4. PMID 25571504 DOI: 10.1109/EMBC.2014.6945136  0.679
2014 Bingham C, Loizos K, Yu G, Hendrickson P, Bouteiller J, Song D, Lazzi G, Berger T. Towards optimizing MEA design, placement, and stimulation patterns using a multi-scale multi-model framework F1000research. 5. DOI: 10.7490/F1000Research.1097276.1  0.753
2014 Bingham C, Loizos K, Guo Y, Yu GJ, Hendrickson PJ, Bouteiller JC, Lazzi G, Berger TW. Multi-scale simulation of extracellular electrode stimulation in the dentate gyrus F1000research. 5. DOI: 10.7490/F1000Research.1097275.1  0.761
2013 Hendrickson PJ, Yu GJ, Robinson BS, Song D, Berger TW. The contribution of relative activation levels between populations of cells to network activity in a large-scale biologically realistic model of the hippocampus. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2013: 5962-5. PMID 24111097 DOI: 10.1109/EMBC.2013.6610910  0.792
2013 Yu GJ, Hendrickson PJ, Robinson BS, Song D, Berger TW. The role of topography in the transformation of spatiotemporal patterns by a large-scale, biologically realistic model of the rat dentate gyrus. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2013: 5950-3. PMID 24111094 DOI: 10.1109/EMBC.2013.6610907  0.782
2012 Hendrickson PJ, Yu GJ, Robinson BS, Song D, Berger TW. Towards a large-scale biologically realistic model of the hippocampus. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2012: 4595-8. PMID 23366951 DOI: 10.1109/EMBC.2012.6346990  0.784
2012 Robinson BS, Yu GJ, Hendrickson PJ, Song D, Berger TW. Implementation of activity-dependent synaptic plasticity rules for a large-scale biologically realistic model of the hippocampus. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2012: 1366-9. PMID 23366153 DOI: 10.1109/EMBC.2012.6346192  0.782
2012 Yu GJ, Robinson BS, Hendrickson PJ, Song D, Berger TW. Implementation of topographically constrained connectivity for a large-scale biologically realistic model of the hippocampus. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2012: 1358-61. PMID 23366151 DOI: 10.1109/EMBC.2012.6346190  0.791
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