| Year |
Citation |
Score |
| 2022 |
Li D, Ding J, Bar-Joseph Z. UNIFAN: A Tool for Unsupervised Single-Cell Clustering and Annotation. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 36036832 DOI: 10.1089/cmb.2022.0251 |
0.557 |
|
| 2022 |
Li D, Ding J, Bar-Joseph Z. Unsupervised cell functional annotation for single-cell RNA-seq. Genome Research. PMID 35764397 DOI: 10.1101/gr.276609.122 |
0.575 |
|
| 2022 |
Hasanaj E, Wang J, Sarathi A, Ding J, Bar-Joseph Z. Interactive single-cell data analysis using Cellar. Nature Communications. 13: 1998. PMID 35422041 DOI: 10.1038/s41467-022-29744-0 |
0.585 |
|
| 2022 |
Li D, Velazquez JJ, Ding J, Hislop J, Ebrahimkhani MR, Bar-Joseph Z. TraSig: inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data. Genome Biology. 23: 73. PMID 35255944 DOI: 10.1186/s13059-022-02629-7 |
0.597 |
|
| 2022 |
Ding J, Sharon N, Bar-Joseph Z. Temporal modelling using single-cell transcriptomics. Nature Reviews. Genetics. PMID 35102309 DOI: 10.1038/s41576-021-00444-7 |
0.622 |
|
| 2021 |
Ding J, Alavi A, Ebrahimkhani MR, Bar-Joseph Z. Computational tools for analyzing single-cell data in pluripotent cell differentiation studies. Cell Reports Methods. 1: 100087. PMID 35474899 DOI: 10.1016/j.crmeth.2021.100087 |
0.586 |
|
| 2020 |
Ding J, Lugo-Martinez J, Yuan Y, Kotton DN, Bar-Joseph Z. Reconstructing SARS-CoV-2 response signaling and regulatory networks. Biorxiv : the Preprint Server For Biology. PMID 33083801 DOI: 10.1101/2020.06.01.127589 |
0.555 |
|
| 2020 |
Li D, Ding J, Bar-Joseph Z. Identifying signaling genes in spatial single cell expression data. Bioinformatics (Oxford, England). PMID 32886099 DOI: 10.1093/Bioinformatics/Btaa769 |
0.586 |
|
| 2020 |
Lin C, Ding J, Bar-Joseph Z. Inferring TF activation order in time series scRNA-Seq studies. Plos Computational Biology. 16: e1007644. PMID 32069291 DOI: 10.1371/Journal.Pcbi.1007644 |
0.575 |
|
| 2020 |
Hurley K, Ding J, Villacorta-Martin C, Herriges MJ, Jacob A, Vedaie M, Alysandratos KD, Sun YL, Lin C, Werder RB, Huang J, Wilson AA, Mithal A, Mostoslavsky G, Oglesby I, et al. Reconstructed Single-Cell Fate Trajectories Define Lineage Plasticity Windows during Differentiation of Human PSC-Derived Distal Lung Progenitors. Cell Stem Cell. PMID 32004478 DOI: 10.1016/J.Stem.2019.12.009 |
0.562 |
|
| 2019 |
McDonough JE, Ahangari F, Li Q, Jain S, Verleden SE, Herazo-Maya J, Vukmirovic M, DeIuliis G, Tzouvelekis A, Tanabe N, Chu F, Yan X, Verschakelen J, Homer RJ, Manatakis DV, ... ... Ding J, et al. Transcriptional regulatory model of fibrosis progression in the human lung. Jci Insight. PMID 31600171 DOI: 10.1172/Jci.Insight.131597 |
0.532 |
|
| 2019 |
Liu H, Zhang CH, Ammanamanchi N, Suresh S, Lewarchik C, Rao K, Uys GM, Han L, Abrial M, Yimlamai D, Ganapathy B, Guillermier C, Chen N, Khaladkar M, Spaethling J, ... ... Ding J, et al. Control of cytokinesis by β-adrenergic receptors indicates an approach for regulating cardiomyocyte endowment. Science Translational Medicine. 11. PMID 31597755 DOI: 10.1126/Scitranslmed.Aaw6419 |
0.487 |
|
| 2019 |
Ding J, Ahangari F, Espinoza CR, Chhabra D, Nicola T, Yan X, Lal CV, Hagood JS, Kaminski N, Bar-Joseph Z, Ambalavanan N. Integrating multi-omics longitudinal data to reconstruct networks underlying lung development. American Journal of Physiology. Lung Cellular and Molecular Physiology. PMID 31432713 DOI: 10.1152/Ajplung.00554.2018 |
0.576 |
|
| 2019 |
Ding J, Lin C, Bar-Joseph Z. Cell lineage inference from SNP and scRNA-Seq data. Nucleic Acids Research. PMID 30820578 DOI: 10.1093/Nar/Gkz146 |
0.562 |
|
| 2018 |
Friedman CE, Nguyen Q, Lukowski SW, Helfer A, Chiu HS, Miklas J, Levy S, Suo S, Han JJ, Osteil P, Peng G, Jing N, Baillie GJ, Senabouth A, Christ AN, ... ... Ding J, et al. Single-Cell Transcriptomic Analysis of Cardiac Differentiation from Human PSCs Reveals HOPX-Dependent Cardiomyocyte Maturation. Cell Stem Cell. 23: 586-598.e8. PMID 30290179 DOI: 10.1016/J.Stem.2018.09.009 |
0.567 |
|
| 2018 |
Ding J, Hagood JS, Ambalavanan N, Kaminski N, Bar-Joseph Z. iDREM: Interactive visualization of dynamic regulatory networks. Plos Computational Biology. 14: e1006019. PMID 29538379 DOI: 10.1371/Journal.Pcbi.1006019 |
0.57 |
|
| 2018 |
Ding J, Aronow B, Kaminski N, Kitzmiller J, Whitsett J, Bar-Joseph Z. Reconstructing differentiation networks and their regulation from time series single cell expression data. Genome Research. PMID 29317474 DOI: 10.1101/Gr.225979.117 |
0.626 |
|
| 2017 |
Ding J, Bar-Joseph Z. MethRaFo: MeDIP-seq methylation estimate using a Random Forest Regressor. Bioinformatics (Oxford, England). PMID 29036558 DOI: 10.1093/Bioinformatics/Btx449 |
0.488 |
|
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