Ellen E. Furlong - Publications

Yale University, New Haven, CT 

68 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Silver ZA, Furlong EE, Johnston AM, Santos LR. Training differences predict dogs' (Canis lupus familiaris) preferences for prosocial others. Animal Cognition. PMID 32757105 DOI: 10.1007/S10071-020-01417-9  1
2020 Jia R, Furlong E, Gao S, Santos LR, Levy I. Learning about the Ellsberg Paradox reduces, but does not abolish, ambiguity aversion. Plos One. 15: e0228782. PMID 32130214 DOI: 10.1371/journal.pone.0228782  1
2016 Miaskowski C, Cooper BA, Aouizerat B, Melisko M, Chen LM, Dunn L, Hu X, Kober KM, Mastick J, Levine JD, Hammer M, Wright F, Harris J, Armes J, Furlong E, et al. The symptom phenotype of oncology outpatients remains relatively stable from prior to through 1 week following chemotherapy. European Journal of Cancer Care. PMID 26777053 DOI: 10.1111/Ecc.12437  0.01
2015 Cannavò E, Khoueiry P, Garfield DA, Geeleher P, Zichner T, Gustafson EH, Ciglar L, Korbel JO, Furlong EE. Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks. Current Biology : Cb. PMID 26687625 DOI: 10.1016/J.Cub.2015.11.034  0.01
2015 Furlong EE, AuBuchon S, Kraut J, Joiner N, Knowles J, Lewis K, Win M, Furlong J. From Crisis to Crowd Control. Commentary: A Crisis in Comparative Psychology: Where Have All the Undergraduates Gone? Frontiers in Psychology. 6: 1729. PMID 26617553 DOI: 10.3389/fpsyg.2015.01729  0.01
2015 Klein FA, Pakozdi T, Anders S, Ghavi-Helm Y, Furlong EE, Huber W. FourCSeq: analysis of 4C sequencing data. Bioinformatics (Oxford, England). PMID 26034064 DOI: 10.1093/Bioinformatics/Btv335  0.01
2015 Nitta KR, Jolma A, Yin Y, Morgunova E, Kivioja T, Akhtar J, Hens K, Toivonen J, Deplancke B, Furlong EE, Taipale J. Conservation of transcription factor binding specificities across 600 million years of bilateria evolution. Elife. 4. PMID 25779349 DOI: 10.7554/Elife.04837  0.01
2014 Hughes CS, Foehr S, Garfield DA, Furlong EE, Steinmetz LM, Krijgsveld J. Ultrasensitive proteome analysis using paramagnetic bead technology. Molecular Systems Biology. 10: 757. PMID 25358341 DOI: 10.15252/Msb.20145625  0.01
2014 Ghavi-Helm Y, Klein FA, Pakozdi T, Ciglar L, Noordermeer D, Huber W, Furlong EE. Enhancer loops appear stable during development and are associated with paused polymerase. Nature. 512: 96-100. PMID 25043061 DOI: 10.1038/Nature13417  0.01
2014 Ciglar L, Girardot C, WilczyÅ„ski B, Braun M, Furlong EE. Coordinated repression and activation of two transcriptional programs stabilizes cell fate during myogenesis. Development (Cambridge, England). 141: 2633-43. PMID 24961800 DOI: 10.1242/Jcs.158311  0.01
2014 Rembold M, Ciglar L, Yáñez-Cuna JO, Zinzen RP, Girardot C, Jain A, Welte MA, Stark A, Leptin M, Furlong EE. A conserved role for Snail as a potentiator of active transcription. Genes & Development. 28: 167-81. PMID 24402316 DOI: 10.1101/Gad.230953.113  0.01
2014 Erceg J, Saunders TE, Girardot C, Devos DP, Hufnagel L, Furlong EE. Subtle changes in motif positioning cause tissue-specific effects on robustness of an enhancer's activity. Plos Genetics. 10: e1004060. PMID 24391522 DOI: 10.1371/Journal.Pgen.1004060  0.01
2014 Ireland PM, McMahon RM, Marshall LE, Halili M, Furlong E, Tay S, Martin JL, Sarkar-Tyson M. Disarming Burkholderia pseudomallei: structural and functional characterization of a disulfide oxidoreductase (DsbA) required for virulence in vivo. Antioxidants & Redox Signaling. 20: 606-17. PMID 23901809 DOI: 10.1089/ars.2013.5375  0.01
2014 Hughes CS, Foehr S, Garfield DA, Furlong EE, Steinmetz LM, Krijgsveld J. Ultrasensitive proteome analysis using paramagnetic bead technology Molecular Systems Biology. 10. DOI: 10.15252/msb.20145625  0.01
2014 Furlong EE, Santos LR. Evolutionary insights into the nature of choice: Evidence from nonhuman primates Moral Psychology, Volume 4: Free Will and Moral Responsibility. 347-360.  1
2014 Furlong EE, Santos LR. Response to Miller and Hare Moral Psychology, Volume 4: Free Will and Moral Responsibility. 375-380.  1
2013 Mbodj A, Junion G, Brun C, Furlong EE, Thieffry D. Logical modelling of Drosophila signalling pathways. Molecular Biosystems. 9: 2248-58. PMID 23868318 DOI: 10.1039/C3Mb70187E  0.01
2013 Zichner T, Garfield DA, Rausch T, Stütz AM, Cannavó E, Braun M, Furlong EE, Korbel JO. Impact of genomic structural variation in Drosophila melanogaster based on population-scale sequencing. Genome Research. 23: 568-79. PMID 23222910 DOI: 10.1101/Gr.142646.112  0.01
2012 Wilczynski B, Liu YH, Yeo ZX, Furlong EE. Predicting spatial and temporal gene expression using an integrative model of transcription factor occupancy and chromatin state. Plos Computational Biology. 8: e1002798. PMID 23236268 DOI: 10.1371/Journal.Pcbi.1002798  0.01
2012 Tseng Q, Lomonosov AM, Furlong EE, Merten CA. Fragmentation of DNA in a sub-microliter microfluidic sonication device. Lab On a Chip. 12: 4677-82. PMID 23014736 DOI: 10.1039/C2Lc40595D  0.01
2012 Spivakov M, Akhtar J, Kheradpour P, Beal K, Girardot C, Koscielny G, Herrero J, Kellis M, Furlong EE, Birney E. Analysis of variation at transcription factor binding sites in Drosophila and humans. Genome Biology. 13: R49. PMID 22950968 DOI: 10.1186/Gb-2012-13-9-R49  0.01
2012 Spitz F, Furlong EE. Transcription factors: from enhancer binding to developmental control. Nature Reviews. Genetics. 13: 613-26. PMID 22868264 DOI: 10.1038/Nrg3207  0.01
2012 Delhomme N, Padioleau I, Furlong EE, Steinmetz LM. easyRNASeq: a bioconductor package for processing RNA-Seq data. Bioinformatics (Oxford, England). 28: 2532-3. PMID 22847932 DOI: 10.1093/Bioinformatics/Bts477  0.01
2012 Bonn S, Zinzen RP, Perez-Gonzalez A, Riddell A, Gavin AC, Furlong EE. Cell type-specific chromatin immunoprecipitation from multicellular complex samples using BiTS-ChIP. Nature Protocols. 7: 978-94. PMID 22538849 DOI: 10.1038/Nprot.2012.049  0.01
2012 Junion G, Spivakov M, Girardot C, Braun M, Gustafson EH, Birney E, Furlong EE. A transcription factor collective defines cardiac cell fate and reflects lineage history. Cell. 148: 473-86. PMID 22304916 DOI: 10.1016/J.Cell.2012.01.030  0.01
2012 Bonn S, Zinzen RP, Girardot C, Gustafson EH, Perez-Gonzalez A, Delhomme N, Ghavi-Helm Y, WilczyÅ„ski B, Riddell A, Furlong EE. Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development. Nature Genetics. 44: 148-56. PMID 22231485 DOI: 10.1038/Ng.1064  0.01
2012 Ghavi-Helm Y, Furlong EE. Analyzing transcription factor occupancy during embryo development using ChIP-seq. Methods in Molecular Biology (Clifton, N.J.). 786: 229-45. PMID 21938630 DOI: 10.1007/978-1-61779-292-2_14  0.01
2011 Furlong EE. Molecular biology: A fly in the face of genomics. Nature. 471: 458-9. PMID 21430772 DOI: 10.1038/471458A  0.01
2011 Opfer JE, Furlong EE. How numbers bias preschoolers' spatial search Journal of Cross-Cultural Psychology. 42: 682-695. DOI: 10.1177/0022022111406098  1
2010 Furlong EE. The importance of being specified: cell fate decisions and their role in cell biology. Molecular Biology of the Cell. 21: 3797-8. PMID 21079016 DOI: 10.1091/mbc.E10-05-0436  0.01
2010 Opfer JE, Thompson CA, Furlong EE. Early development of spatial-numeric associations: evidence from spatial and quantitative performance of preschoolers. Developmental Science. 13: 761-71. PMID 20712742 DOI: 10.1111/j.1467-7687.2009.00934.x  1
2010 Cunha PM, Sandmann T, Gustafson EH, Ciglar L, Eichenlaub MP, Furlong EE. Combinatorial binding leads to diverse regulatory responses: Lmd is a tissue-specific modulator of Mef2 activity. Plos Genetics. 6: e1001014. PMID 20617173 DOI: 10.1371/Journal.Pgen.1001014  0.01
2010 WilczyÅ„ski B, Furlong EE. Dynamic CRM occupancy reflects a temporal map of developmental progression. Molecular Systems Biology. 6: 383. PMID 20571532 DOI: 10.1038/Msb.2010.35  0.01
2010 Honkela A, Girardot C, Gustafson EH, Liu YH, Furlong EE, Lawrence ND, Rattray M. Model-based method for transcription factor target identification with limited data. Proceedings of the National Academy of Sciences of the United States of America. 107: 7793-8. PMID 20385836 DOI: 10.1073/Pnas.0914285107  0.01
2010 Wilczynski B, Furlong EE. Challenges for modeling global gene regulatory networks during development: insights from Drosophila. Developmental Biology. 340: 161-9. PMID 19874814 DOI: 10.1016/J.Ydbio.2009.10.032  0.01
2010 Furlong E. The role of nurses and nursing education in the palliative care of patients and their families Ethical Foundations of Palliative Care For Alzheimer Disease. 243-260.  0.01
2009 Ciglar L, Furlong EE. Conservation and divergence in developmental networks: a view from Drosophila myogenesis. Current Opinion in Cell Biology. 21: 754-60. PMID 19896355 DOI: 10.1016/J.Ceb.2009.10.001  0.01
2009 Zinzen RP, Girardot C, Gagneur J, Braun M, Furlong EE. Combinatorial binding predicts spatio-temporal cis-regulatory activity. Nature. 462: 65-70. PMID 19890324 DOI: 10.1038/Nature08531  0.01
2009 Liu YH, Jakobsen JS, Valentin G, Amarantos I, Gilmour DT, Furlong EE. A systematic analysis of Tinman function reveals Eya and JAK-STAT signaling as essential regulators of muscle development. Developmental Cell. 16: 280-91. PMID 19217429 DOI: 10.1016/J.Devcel.2009.01.006  0.01
2009 Furlong EE, Opfer JE. Cognitive constraints on how economic rewards affect cooperation. Psychological Science. 20: 11-6. PMID 19037906 DOI: 10.1111/j.1467-9280.2008.02244.x  1
2008 Zinzen RP, Furlong EE. Divergence in cis-regulatory networks: taking the 'species' out of cross-species analysis. Genome Biology. 9: 240. PMID 19012800 DOI: 10.1186/Gb-2008-9-11-240  0.01
2008 Oktaba K, Gutiérrez L, Gagneur J, Girardot C, Sengupta AK, Furlong EE, Müller J. Dynamic regulation by polycomb group protein complexes controls pattern formation and the cell cycle in Drosophila. Developmental Cell. 15: 877-89. PMID 18993116 DOI: 10.1016/J.Devcel.2008.10.005  0.01
2008 Bonn S, Furlong EE. cis-Regulatory networks during development: a view of Drosophila. Current Opinion in Genetics & Development. 18: 513-20. PMID 18929653 DOI: 10.1016/J.Gde.2008.09.005  0.01
2008 Furlong EE. A topographical map of spatiotemporal patterns of gene expression. Developmental Cell. 14: 639-40. PMID 18477445 DOI: 10.1016/J.Devcel.2008.04.007  0.01
2008 Shah PK, Tripathi LP, Jensen LJ, Gahnim M, Mason C, Furlong EE, Rodrigues V, White KP, Bork P, Sowdhamini R. Enhanced function annotations for Drosophila serine proteases: a case study for systematic annotation of multi-member gene families. Gene. 407: 199-215. PMID 17996400 DOI: 10.1016/J.Gene.2007.10.012  0.01
2008 Haudry Y, Berube H, Letunic I, Weeber PD, Gagneur J, Girardot C, Kapushesky M, Arendt D, Bork P, Brazma A, Furlong EE, Wittbrodt J, Henrich T. 4DXpress: a database for cross-species expression pattern comparisons. Nucleic Acids Research. 36: D847-53. PMID 17916571 DOI: 10.1093/Nar/Gkm797  0.01
2008 Furlong EE, Boose KJ, Boysen ST. Raking it in: the impact of enculturation on chimpanzee tool use. Animal Cognition. 11: 83-97. PMID 17516100 DOI: 10.1007/s10071-007-0091-6  1
2008 Bulloch MJ, Boysen ST, Furlong EE. Visual attention and its relation to knowledge states in chimpanzees, Pan troglodytes Animal Behaviour. 76: 1147-1155. DOI: 10.1016/j.anbehav.2008.01.033  1
2007 Jakobsen JS, Braun M, Astorga J, Gustafson EH, Sandmann T, Karzynski M, Carlsson P, Furlong EE. Temporal ChIP-on-chip reveals Biniou as a universal regulator of the visceral muscle transcriptional network. Genes & Development. 21: 2448-60. PMID 17908931 DOI: 10.1101/Gad.437607  0.01
2007 Sandmann T, Girardot C, Brehme M, Tongprasit W, Stolc V, Furlong EE. A core transcriptional network for early mesoderm development in Drosophila melanogaster. Genes & Development. 21: 436-49. PMID 17322403 DOI: 10.1101/Gad.1509007  0.01
2007 Girardot C, Sklyar O, Grosz S, Huber W, Furlong EE. CoCo: a web application to display, store and curate ChIP-on-chip data integrated with diverse types of gene expression data. Bioinformatics (Oxford, England). 23: 771-3. PMID 17234641 DOI: 10.1093/Bioinformatics/Btl641  0.01
2007 Hooper SD, Boué S, Krause R, Jensen LJ, Mason CE, Ghanim M, White KP, Furlong EE, Bork P. Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis. Molecular Systems Biology. 3: 72. PMID 17224916 DOI: 10.1038/Msb4100112  0.01
2007 Furlong EE, Opfer JE. Numbers, not value, motivate cooperation in humans and orangutans Nature Precedings. 2: 1-1. DOI: 10.1038/Npre.2007.1392.1  1
2006 Sandmann T, Jakobsen JS, Furlong EE. ChIP-on-chip protocol for genome-wide analysis of transcription factor binding in Drosophila melanogaster embryos. Nature Protocols. 1: 2839-55. PMID 17406543 DOI: 10.1038/Nprot.2006.383  0.01
2006 Spitz F, Furlong EE. Genomics and development: Taking developmental biology to new heights. Developmental Cell. 11: 451-7. PMID 17051688 DOI: 10.1016/J.Devcel.2006.09.013  0.01
2006 Zimmermann G, Furlong EE, Suyama K, Scott MP. Mes2, a MADF-containing transcription factor essential for Drosophila development. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 235: 3387-95. PMID 17029287 DOI: 10.1002/dvdy.20970  0.01
2006 Sandmann T, Jensen LJ, Jakobsen JS, Karzynski MM, Eichenlaub MP, Bork P, Furlong EE. A temporal map of transcription factor activity: mef2 directly regulates target genes at all stages of muscle development. Developmental Cell. 10: 797-807. PMID 16740481 DOI: 10.1016/J.Devcel.2006.04.009  0.01
2006 Brandt A, Papagiannouli F, Wagner N, Wilsch-Bräuninger M, Braun M, Furlong EE, Loserth S, Wenzl C, Pilot F, Vogt N, Lecuit T, Krohne G, Grosshans J. Developmental control of nuclear size and shape by Kugelkern and Kurzkern. Current Biology : Cb. 16: 543-52. PMID 16458513 DOI: 10.1016/j.cub.2006.01.051  0.01
2005 Furlong EE. A functional genomics approach to identify new regulators of Wnt signaling. Developmental Cell. 8: 624-6. PMID 15866154 DOI: 10.1016/j.devcel.2005.04.006  0.01
2005 Qiu F, Brendel S, Cunha PM, Astola N, Song B, Furlong EE, Leonard KR, Bullard B. Myofilin, a protein in the thick filaments of insect muscle. Journal of Cell Science. 118: 1527-36. PMID 15769842 DOI: 10.1242/Jcs.02281  0.01
2004 Hollich V, Johnson E, Furlong EE, Beckmann B, Carlson J, Celniker SE, Hoheisel JD. Creation of a minimal tiling path of genomic clones for Drosophila: provision of a common resource. Biotechniques. 37: 282-4. PMID 15335221 DOI: 10.2144/04372Mt01  0.01
2004 Furlong EE. Integrating transcriptional and signalling networks during muscle development. Current Opinion in Genetics & Development. 14: 343-50. PMID 15261649 DOI: 10.1016/j.gde.2004.06.011  0.01
2003 Artero R, Furlong EE, Beckett K, Scott MP, Baylies M. Notch and Ras signaling pathway effector genes expressed in fusion competent and founder cells during Drosophila myogenesis. Development (Cambridge, England). 130: 6257-72. PMID 14602676 DOI: 10.1242/dev.00843  0.01
2002 Arbeitman MN, Furlong EE, Imam F, Johnson E, Null BH, Baker BS, Krasnow MA, Scott MP, Davis RW, White KP. Gene expression during the life cycle of Drosophila melanogaster. Science (New York, N.Y.). 297: 2270-5. PMID 12351791 DOI: 10.1126/Science.1072152  0.01
2001 Furlong EE, Andersen EC, Null B, White KP, Scott MP. Patterns of gene expression during Drosophila mesoderm development. Science (New York, N.Y.). 293: 1629-33. PMID 11486054 DOI: 10.1126/Science.1062660  0.01
2001 Furlong EE, Profitt D, Scott MP. Automated sorting of live transgenic embryos. Nature Biotechnology. 19: 153-6. PMID 11175730 DOI: 10.1038/84422  0.01
1996 Furlong EE, Keon NK, Thornton FD, Rein T, Martin F. Expression of a 74-kDa nuclear factor 1 (NF1) protein is induced in mouse mammary gland involution. Involution-enhanced occupation of a twin NF1 binding element in the testosterone-repressed prostate message-2/clusterin promoter. The Journal of Biological Chemistry. 271: 29688-97. PMID 8939902 DOI: 10.1074/Jbc.271.47.29688  0.01
1996 Furlong EE, Rein T, Martin F. YY1 and NF1 both activate the human p53 promoter by alternatively binding to a composite element, and YY1 and E1A cooperate to amplify p53 promoter activity. Molecular and Cellular Biology. 16: 5933-45. PMID 8816507 DOI: 10.1128/Mcb.16.10.5933  0.01
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