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Xinxian Deng, Ph.D. - Publications

Affiliations: 
Tufts University, Boston 
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31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Lin J, Zhang J, Ma L, Fang H, Ma R, Groneck C, Filippova GN, Deng X, Ma W, Disteche CM, Berletch JB. KDM6A facilitates Xist upregulation at the onset of X inactivation. Biorxiv : the Preprint Server For Biology. PMID 37645756 DOI: 10.1101/2023.08.16.553617  0.62
2023 Fang H, Tronco AR, Bonora G, Nguyen T, Thakur J, Berletch JB, Filippova GN, Henikoff S, Shendure J, Noble WS, Disteche CM, Deng X. CTCF-mediated insulation and chromatin environment modulate escape from X inactivation. Biorxiv : the Preprint Server For Biology. PMID 37205597 DOI: 10.1101/2023.05.04.539469  0.57
2023 Bozarth XL, Lopez J, Fang H, Lee-Eng J, Duan Z, Deng X. Phenotypes and Genotypes in Patients with -Related Developmental and Epileptic Encephalopathy. Genes. 14. PMID 37107610 DOI: 10.3390/genes14040852  0.428
2021 Bonora G, Ramani V, Singh R, Fang H, Jackson DL, Srivatsan S, Qiu R, Lee C, Trapnell C, Shendure J, Duan Z, Deng X, Noble WS, Disteche CM. Single-cell landscape of nuclear configuration and gene expression during stem cell differentiation and X inactivation. Genome Biology. 22: 279. PMID 34579774 DOI: 10.1186/s13059-021-02432-w  0.361
2021 Fang H, Deng X, Disteche CM. X-factors in human disease: Impact of gene content and dosage regulation. Human Molecular Genetics. PMID 34387327 DOI: 10.1093/hmg/ddab221  0.603
2020 Fang H, Bonora G, Lewandowski JP, Thakur J, Filippova GN, Henikoff S, Shendure J, Duan Z, Rinn JL, Deng X, Noble WS, Disteche CM. Trans- and cis-acting effects of Firre on epigenetic features of the inactive X chromosome. Nature Communications. 11: 6053. PMID 33247132 DOI: 10.1038/s41467-020-19879-3  0.515
2019 Deng X, Disteche CM. Rapid transcriptional bursts upregulate the X chromosome. Nature Structural & Molecular Biology. 26: 851-853. PMID 31582850 DOI: 10.1038/S41594-019-0314-Y  0.558
2018 Ma W, Bonora G, Berletch JB, Deng X, Noble WS, Disteche CM. X-Chromosome Inactivation and Escape from X Inactivation in Mouse. Methods in Molecular Biology (Clifton, N.J.). 1861: 205-219. PMID 30218369 DOI: 10.1007/978-1-4939-8766-5_15  0.606
2015 Berletch JB, Ma W, Yang F, Shendure J, Noble WS, Disteche CM, Deng X. Identification of genes escaping X inactivation by allelic expression analysis in a novel hybrid mouse model. Data in Brief. 5: 761-9. PMID 26693509 DOI: 10.1016/J.Dib.2015.10.033  0.563
2015 Xu Y, Wu G, Hao B, Chen L, Deng X, Xu Q. Identification, characterization and expression analysis of lineage-specific genes within sweet orange (Citrus sinensis). Bmc Genomics. 16: 995. PMID 26597278 DOI: 10.1186/s12864-015-2211-z  0.316
2015 Chan Z, Wang Y, Cao M, Gong Y, Mu Z, Wang H, Hu Y, Deng X, He XJ, Zhu JK. RDM4 modulates cold stress resistance in Arabidopsis partially through the CBF-mediated pathway. The New Phytologist. PMID 26522658 DOI: 10.1111/Nph.13727  0.353
2015 Yang M, Wang X, Huang H, Ren D, Su Y, Zhu P, Zhu D, Fan L, Chen L, He G, Deng XW. Natural variation of H3K27me3 modification in two Arabidopsis accessions and their hybrid. Journal of Integrative Plant Biology. PMID 26497803 DOI: 10.1111/jipb.12443  0.308
2015 Deng X, Zhou H, Zhang G, Wang W, Mao L, Zhou X, Yu Y, Lu H. Sgf73, a subunit of SAGA complex, is required for the assembly of RITS complex in fission yeast. Scientific Reports. 5: 14707. PMID 26443059 DOI: 10.1038/srep14707  0.301
2015 Xu J, Xu H, Liu Y, Wang X, Xu Q, Deng X. Genome-wide identification of sweet orange (Citrus sinensis) histone modification gene families and their expression analysis during the fruit development and fruit-blue mold infection process. Frontiers in Plant Science. 6: 607. PMID 26300904 DOI: 10.3389/fpls.2015.00607  0.306
2015 Li C, Hu Y, Huang R, Ma X, Wang Y, Liao T, Zhong P, Xiao F, Sun C, Xu Z, Deng X, Wang P. Mutation of FdC2 gene encoding a ferredoxin-like protein with C-terminal extension causes yellow-green leaf phenotype in rice. Plant Science : An International Journal of Experimental Plant Biology. 238: 127-134. PMID 26259181 DOI: 10.1016/j.plantsci.2015.06.010  0.368
2015 Deng X, Ma W, Ramani V, Hill A, Yang F, Ay F, Berletch JB, Blau CA, Shendure J, Duan Z, Noble WS, Disteche CM. Bipartite structure of the inactive mouse X chromosome. Genome Biology. 16: 152. PMID 26248554 DOI: 10.1186/S13059-015-0728-8  0.569
2015 Yang F, Deng X, Ma W, Berletch JB, Rabaia N, Wei G, Moore JM, Filippova GN, Xu J, Liu Y, Noble WS, Shendure J, Disteche CM. The lncRNA Firre anchors the inactive X chromosome to the nucleolus by binding CTCF and maintains H3K27me3 methylation. Genome Biology. 16: 52. PMID 25887447 DOI: 10.1186/S13059-015-0618-0  0.625
2015 Berletch JB, Ma W, Yang F, Shendure J, Noble WS, Disteche CM, Deng X. Escape from X inactivation varies in mouse tissues. Plos Genetics. 11: e1005079. PMID 25785854 DOI: 10.1371/Journal.Pgen.1005079  0.566
2014 Deng X, Berletch JB, Nguyen DK, Disteche CM. X chromosome regulation: diverse patterns in development, tissues and disease. Nature Reviews. Genetics. 15: 367-78. PMID 24733023 DOI: 10.1038/Nrg3687  0.602
2013 Berletch JB, Deng X, Nguyen DK, Disteche CM. Female bias in Rhox6 and 9 regulation by the histone demethylase KDM6A. Plos Genetics. 9: e1003489. PMID 23658530 DOI: 10.1371/Journal.Pgen.1003489  0.511
2013 Deng X, Berletch JB, Ma W, Nguyen DK, Hiatt JB, Noble WS, Shendure J, Disteche CM. Mammalian X upregulation is associated with enhanced transcription initiation, RNA half-life, and MOF-mediated H4K16 acetylation. Developmental Cell. 25: 55-68. PMID 23523075 DOI: 10.1016/J.Devcel.2013.01.028  0.545
2011 Deng X, Hiatt JB, Nguyen DK, Ercan S, Sturgill D, Hillier LW, Schlesinger F, Davis CA, Reinke VJ, Gingeras TR, Shendure J, Waterston RH, Oliver B, Lieb JD, Disteche CM. Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster. Nature Genetics. 43: 1179-85. PMID 22019781 DOI: 10.1038/Ng.948  0.611
2010 Deng X, Disteche CM. Genomic responses to abnormal gene dosage: the X chromosome improved on a common strategy. Plos Biology. 8: e1000318. PMID 20186268 DOI: 10.1371/Journal.Pbio.1000318  0.525
2009 Deng X, Nguyen DK, Hansen RS, Van Dyke DL, Gartler SM, Disteche CM. Dosage regulation of the active X chromosome in human triploid cells. Plos Genetics. 5: e1000751. PMID 19997486 DOI: 10.1371/Journal.Pgen.1000751  0.532
2009 Deng X, Koya SK, Kong Y, Meller VH. Coordinated regulation of heterochromatic genes in Drosophila melanogaster males. Genetics. 182: 481-91. PMID 19307603 DOI: 10.1534/Genetics.109.102087  0.715
2009 Deng X, Meller VH. Molecularly severe roX1 mutations contribute to dosage compensation in Drosophila. Genesis (New York, N.Y. : 2000). 47: 49-54. PMID 19101984 DOI: 10.1002/Dvg.20463  0.763
2008 Xu J, Deng X, Disteche CM. Sex-specific expression of the X-linked histone demethylase gene Jarid1c in brain. Plos One. 3: e2553. PMID 18596936 DOI: 10.1371/Journal.Pone.0002553  0.388
2008 Xu J, Deng X, Watkins R, Disteche CM. Sex-specific differences in expression of histone demethylases Utx and Uty in mouse brain and neurons. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 28: 4521-7. PMID 18434530 DOI: 10.1523/Jneurosci.5382-07.2008  0.497
2006 Deng X, Meller VH. roX RNAs are required for increased expression of X-linked genes in Drosophila melanogaster males. Genetics. 174: 1859-66. PMID 17028315 DOI: 10.1534/Genetics.106.064568  0.759
2006 Deng X, Meller VH. Non-coding RNA in fly dosage compensation. Trends in Biochemical Sciences. 31: 526-32. PMID 16890440 DOI: 10.1016/J.Tibs.2006.07.007  0.717
2005 Deng X, Rattner BP, Souter S, Meller VH. The severity of roX1 mutations is predicted by MSL localization on the X chromosome. Mechanisms of Development. 122: 1094-105. PMID 16125915 DOI: 10.1016/J.Mod.2005.06.004  0.679
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