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Chandra L. Theesfeld, Ph.D. - Publications

Affiliations: 
2001 Duke University, Durham, NC 
Area:
Cell Biology, Molecular Biology
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8/45 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Iserman C, Roden CA, Boerneke MA, Sealfon RSG, McLaughlin GA, Jungreis I, Fritch EJ, Hou YJ, Ekena J, Weidmann CA, Theesfeld CL, Kellis M, Troyanskaya OG, Baric RS, Sheahan TP, et al. Genomic RNA Elements Drive Phase Separation of the SARS-CoV-2 Nucleocapsid. Molecular Cell. PMID 33290746 DOI: 10.1016/j.molcel.2020.11.041  0.521
2020 Iserman C, Roden C, Boerneke M, Sealfon R, McLaughlin G, Jungreis I, Park C, Boppana A, Fritch E, Hou YJ, Theesfeld C, Troyanskaya OG, Baric RS, Sheahan TP, Weeks K, et al. Specific viral RNA drives the SARS CoV-2 nucleocapsid to phase separate. Biorxiv : the Preprint Server For Biology. PMID 32587965 DOI: 10.1101/2020.06.11.147199  0.531
2005 Irazoqui JE, Howell AS, Theesfeld CL, Lew DJ. Opposing roles for actin in Cdc42p polarization. Molecular Biology of the Cell. 16: 1296-304. PMID 15616194 DOI: 10.1091/Mbc.E04-05-0430  0.551
2003 Theesfeld CL, Zyla TR, Bardes EG, Lew DJ. A monitor for bud emergence in the yeast morphogenesis checkpoint. Molecular Biology of the Cell. 14: 3280-91. PMID 12925763 DOI: 10.1091/Mbc.E03-03-0154  0.62
2002 McMillan JN, Theesfeld CL, Harrison JC, Bardes ES, Lew DJ. Determinants of Swe1p degradation in Saccharomyces cerevisiae. Molecular Biology of the Cell. 13: 3560-75. PMID 12388757 DOI: 10.1091/Mbc.E02-05-0283  0.651
2000 Longtine MS, Theesfeld CL, McMillan JN, Weaver E, Pringle JR, Lew DJ. Septin-dependent assembly of a cell cycle-regulatory module in Saccharomyces cerevisiae. Molecular and Cellular Biology. 20: 4049-61. PMID 10805747 DOI: 10.1128/Mcb.20.11.4049-4061.2000  0.612
1999 McMillan JN, Longtine MS, Sia RA, Theesfeld CL, Bardes ES, Pringle JR, Lew DJ. The morphogenesis checkpoint in Saccharomyces cerevisiae: cell cycle control of Swe1p degradation by Hsl1p and Hsl7p. Molecular and Cellular Biology. 19: 6929-39. PMID 10490630 DOI: 10.1128/Mcb.19.10.6929  0.611
1999 Theesfeld CL, Irazoqui JE, Bloom K, Lew DJ. The role of actin in spindle orientation changes during the Saccharomyces cerevisiae cell cycle. The Journal of Cell Biology. 146: 1019-32. PMID 10477756 DOI: 10.1083/Jcb.146.5.1019  0.685
Low-probability matches (unlikely to be authored by this person)
2013 Theesfeld CL, Hampton RY. Insulin-induced gene protein (INSIG)-dependent sterol regulation of Hmg2 endoplasmic reticulum-associated degradation (ERAD) in yeast. The Journal of Biological Chemistry. 288: 8519-30. PMID 23306196 DOI: 10.1074/Jbc.M112.404517  0.273
2011 Theesfeld CL, Pourmand D, Davis T, Garza RM, Hampton RY. The sterol-sensing domain (SSD) directly mediates signal-regulated endoplasmic reticulum-associated degradation (ERAD) of 3-hydroxy-3-methylglutaryl (HMG)-CoA reductase isozyme Hmg2. The Journal of Biological Chemistry. 286: 26298-307. PMID 21628456 DOI: 10.1074/Jbc.M111.244798  0.219
2016 Oughtred R, Chatr-Aryamontri A, Breitkreutz BJ, Chang CS, Rust JM, Theesfeld CL, Heinicke S, Breitkreutz A, Chen D, Hirschman J, Kolas N, Livstone MS, Nixon J, O'Donnell L, Ramage L, et al. BioGRID: A Resource for Studying Biological Interactions in Yeast. Cold Spring Harbor Protocols. 2016: pdb.top080754. PMID 26729913 DOI: 10.1101/Pdb.Top080754  0.173
2023 Sokolova K, Theesfeld CL, Wong AK, Zhang Z, Dolinski K, Troyanskaya OG. Atlas of primary cell-type-specific sequence models of gene expression and variant effects. Cell Reports Methods. 100580. PMID 37703883 DOI: 10.1016/j.crmeth.2023.100580  0.172
2024 Chen X, Wang Y, Cappuccio A, Cheng WS, Zamojski FR, Nair VD, Miller CM, Rubenstein AB, Nudelman G, Tadych A, Theesfeld CL, Vornholt A, George MC, Ruffin F, Dagher M, et al. Author Correction: Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data. Nature Computational Science. 3: 805. PMID 38177788 DOI: 10.1038/s43588-023-00523-1  0.166
2023 Chen X, Wang Y, Cappuccio A, Cheng WS, Zamojski FR, Nair VD, Miller CM, Rubenstein AB, Nudelman G, Tadych A, Theesfeld CL, Vornholt A, George MC, Ruffin F, Dagher M, et al. Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data. Nature Computational Science. 3: 644-657. PMID 37974651 DOI: 10.1038/s43588-023-00476-5  0.166
2005 Balakrishnan R, Christie KR, Costanzo MC, Dolinski K, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hong EL, Nash R, Oughtred R, Skrzypek M, Theesfeld CL, Binkley G, Dong Q, et al. Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD). Nucleic Acids Research. 33: D374-7. PMID 15608219 DOI: 10.1093/Nar/Gki023  0.161
2016 Chatr-Aryamontri A, Oughtred R, Boucher L, Rust J, Chang C, Kolas NK, O'Donnell L, Oster S, Theesfeld C, Sellam A, Stark C, Breitkreutz BJ, Dolinski K, Tyers M. The BioGRID interaction database: 2017 update. Nucleic Acids Research. PMID 27980099 DOI: 10.1093/Nar/Gkw1102  0.153
2003 Weng S, Dong Q, Balakrishnan R, Christie K, Costanzo M, Dolinski K, Dwight SS, Engel S, Fisk DG, Hong E, Issel-Tarver L, Sethuraman A, Theesfeld C, Andrada R, Binkley G, et al. Saccharomyces Genome Database (SGD) provides biochemical and structural information for budding yeast proteins. Nucleic Acids Research. 31: 216-8. PMID 12519985 DOI: 10.1093/Nar/Gkg054  0.153
2016 Oughtred R, Chatr-Aryamontri A, Breitkreutz BJ, Chang CS, Rust JM, Theesfeld CL, Heinicke S, Breitkreutz A, Chen D, Hirschman J, Kolas N, Livstone MS, Nixon J, O'Donnell L, Ramage L, et al. Use of the BioGRID Database for Analysis of Yeast Protein and Genetic Interactions. Cold Spring Harbor Protocols. 2016: pdb.prot088880. PMID 26729909 DOI: 10.1101/Pdb.Prot088880  0.151
2021 Park CY, Zhou J, Wong AK, Chen KM, Theesfeld CL, Darnell RB, Troyanskaya OG. Genome-wide landscape of RNA-binding protein target site dysregulation reveals a major impact on psychiatric disorder risk. Nature Genetics. PMID 33462483 DOI: 10.1038/s41588-020-00761-3  0.146
2015 Chatr-Aryamontri A, Breitkreutz BJ, Oughtred R, Boucher L, Heinicke S, Chen D, Stark C, Breitkreutz A, Kolas N, O'Donnell L, Reguly T, Nixon J, Ramage L, Winter A, Sellam A, ... ... Theesfeld C, et al. The BioGRID interaction database: 2015 update. Nucleic Acids Research. 43: D470-8. PMID 25428363 DOI: 10.1093/Nar/Gku1204  0.135
2020 Menon R, Otto EA, Sealfon R, Nair V, Wong AK, Theesfeld CL, Chen X, Wang Y, Boppana AS, Luo J, Yang Y, Kasson PM, Schaub JA, Berthier CC, Eddy S, et al. SARS-CoV-2 receptor networks in diabetic and COVID-19 associated kidney disease. Kidney International. PMID 33038424 DOI: 10.1016/j.kint.2020.09.015  0.128
2004 Christie KR, Weng S, Balakrishnan R, Costanzo MC, Dolinski K, Dwight SS, Engel SR, Feierbach B, Fisk DG, Hirschman JE, Hong EL, Issel-Tarver L, Nash R, Sethuraman A, Starr B, ... Theesfeld CL, et al. Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms. Nucleic Acids Research. 32: D311-4. PMID 14681421 DOI: 10.1093/Nar/Gkh033  0.122
2020 Menon R, Otto EE, Sealfon R, Nair V, Wong AK, Theesfeld CL, Chen X, Wang Y, Boppana A, Kasson PM, Schaub JA, Berthier CC, Eddy S, Lienczewski CC, Godfrey B, et al. SARS-CoV-2 receptor networks in diabetic kidney disease, BK-Virus nephropathy and COVID-19 associated acute kidney injury. Medrxiv : the Preprint Server For Health Sciences. PMID 32511461 DOI: 10.1101/2020.05.09.20096511  0.12
2024 Pan Z, Theesfeld CL. Deciphering missense coding variants with AlphaMissense. Kidney International. PMID 38647510 DOI: 10.1016/j.kint.2024.02.022  0.12
2007 Nash R, Weng S, Hitz B, Balakrishnan R, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hong EL, Livstone MS, Oughtred R, Park J, Skrzypek M, ... Theesfeld CL, et al. Expanded protein information at SGD: new pages and proteome browser. Nucleic Acids Research. 35: D468-71. PMID 17142221 DOI: 10.1093/Nar/Gkl931  0.11
2021 Chen X, Zhou J, Zhang R, Wong AK, Park CY, Theesfeld CL, Troyanskaya OG. Tissue-specific enhancer functional networks for associating distal regulatory regions to disease. Cell Systems. PMID 33689683 DOI: 10.1016/j.cels.2021.02.002  0.102
2003 Dong Q, Balakrishnan R, Binkley G, Christie KR, Costanzo M, Dolinski K, Dwight SS, Engel S, Fisk DG, Hirschman J, Hong EL, Nash R, Issel-Tarver L, Sethuraman A, Theesfeld CL, et al. Gene function, metabolic pathways and comparative genomics in yeast Proceedings of the 2003 Ieee Bioinformatics Conference, Csb 2003. 437-438. DOI: 10.1109/CSB.2003.1227362  0.099
2021 Wong AK, Sealfon RSG, Theesfeld CL, Troyanskaya OG. Decoding disease: from genomes to networks to phenotypes. Nature Reviews. Genetics. PMID 34341555 DOI: 10.1038/s41576-021-00389-x  0.083
2004 Dwight SS, Balakrishnan R, Christie KR, Costanzo MC, Dolinski K, Engel SR, Feierbach B, Fisk DG, Hirschman J, Hong EL, Issel-Tarver L, Nash RS, Sethuraman A, Starr B, Theesfeld CL, et al. Saccharomyces genome database: underlying principles and organisation. Briefings in Bioinformatics. 5: 9-22. PMID 15153302 DOI: 10.1093/Bib/5.1.9  0.083
2016 Sun S, Yang F, Tan G, Costanzo M, Oughtred R, Hirschman J, Theesfeld C, Bansal P, Sahni N, Yi S, Yu A, Tyagi T, Tie C, Hill DE, Vidal M, et al. An extended set of yeast-based functional assays accurately identifies human disease mutations. Genome Research. PMID 26975778 DOI: 10.1101/Gr.192526.115  0.078
2006 Hirschman JE, Balakrishnan R, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hong EL, Livstone MS, Nash R, Park J, Oughtred R, Skrzypek M, Starr B, Theesfeld CL, et al. Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome. Nucleic Acids Research. 34: D442-5. PMID 16381907 DOI: 10.1093/Nar/Gkj117  0.077
2019 Zhou J, Schor IE, Yao V, Theesfeld CL, Marco-Ferreres R, Tadych A, Furlong EEM, Troyanskaya OG. Accurate genome-wide predictions of spatio-temporal gene expression during embryonic development. Plos Genetics. 15: e1008382. PMID 31553718 DOI: 10.1371/Journal.Pgen.1008382  0.076
2021 Cofer EM, Raimundo J, Tadych A, Yamazaki Y, Wong AK, Theesfeld CL, Levine MS, Troyanskaya OG. Modeling transcriptional regulation of model species with deep learning. Genome Research. PMID 33888512 DOI: 10.1101/gr.266171.120  0.073
2004 Harris MA, Clark J, Ireland A, Lomax J, Ashburner M, Foulger R, Eilbeck K, Lewis S, Marshall B, Mungall C, Richter J, Rubin GM, Blake JA, Bult C, Dolan M, ... ... Theesfeld CL, et al. The Gene Ontology (GO) database and informatics resource. Nucleic Acids Research. 32: D258-61. PMID 14681407 DOI: 10.1093/nar/gkh036  0.072
2005 Myers CL, Robson D, Wible A, Hibbs MA, Chiriac C, Theesfeld CL, Dolinski K, Troyanskaya OG. Discovery of biological networks from diverse functional genomic data. Genome Biology. 6: R114. PMID 16420673 DOI: 10.1186/Gb-2005-6-13-R114  0.067
2019 Zhou J, Park CY, Theesfeld CL, Wong AK, Yuan Y, Scheckel C, Fak JJ, Funk J, Yao K, Tajima Y, Packer A, Darnell RB, Troyanskaya OG. Whole-genome deep-learning analysis identifies contribution of noncoding mutations to autism risk. Nature Genetics. PMID 31133750 DOI: 10.1038/S41588-019-0420-0  0.059
2018 Zhou J, Theesfeld CL, Yao K, Chen KM, Wong AK, Troyanskaya OG. Deep learning sequence-based ab initio prediction of variant effects on expression and disease risk. Nature Genetics. PMID 30013180 DOI: 10.1038/S41588-018-0160-6  0.059
2016 Krishnan A, Zhang R, Yao V, Theesfeld CL, Wong AK, Tadych A, Volfovsky N, Packer A, Lash A, Troyanskaya OG. Genome-wide prediction and functional characterization of the genetic basis of autism spectrum disorder. Nature Neuroscience. PMID 27479844 DOI: 10.1038/Nn.4353  0.057
2019 Lee YS, Krishnan A, Oughtred R, Rust J, Chang CS, Ryu J, Kristensen VN, Dolinski K, Theesfeld CL, Troyanskaya OG. A Computational Framework for Genome-wide Characterization of the Human Disease Landscape. Cell Systems. PMID 30685436 DOI: 10.1016/J.Cels.2018.12.010  0.047
2018 Zhou J, Theesfeld C, Troyanskaya O. 203. Decoding the Role of Noncoding Genome in Neurological Disease With Deep Learning Biological Psychiatry. 83: S82. DOI: 10.1016/J.Biopsych.2018.02.222  0.046
1996 Friedlander M, Theesfeld CL, Sugita M, Fruttiger M, Thomas MA, Chang S, Cheresh DA. Involvement of integrins αvβ3 and αvβ5 in ocular neovascular diseases Proceedings of the National Academy of Sciences of the United States of America. 93: 9764-9769. PMID 8790405 DOI: 10.1073/Pnas.93.18.9764  0.044
2020 Graim K, Gorenshteyn D, Robinson DG, Carriero NJ, Cahill JA, Chakrabarti R, Goldschmidt MH, Durham AC, Funk J, Storey J, Kristensen VN, Theesfeld CL, Sorenmo KU, Troyanskaya OG. Modeling molecular development of breast cancer in canine mammary tumors. Genome Research. PMID 33361113 DOI: 10.1101/gr.256388.119  0.04
2002 Strömblad S, Fotedar A, Brickner H, Theesfeld C, Aguilar de Diaz E, Friedlander M, Cheresh DA. Loss of p53 compensates for alpha v-integrin function in retinal neovascularization. The Journal of Biological Chemistry. 277: 13371-4. PMID 11856728 DOI: 10.1074/Jbc.C200044200  0.023
2004 Harris MA, Clark J, Ireland A, Lomax J, Ashburner M, Foulger R, Eilbeck K, Lewis S, Marshall B, Mungall C, Richter J, Rubin GM, Blake JA, Bult C, Dolan M, ... ... Theesfeld CL, et al. The Gene Oncology (GO) database and informatics resource Nucleic Acids Research. 32: D258-D261.  0.021
1996 Friedlander M, Theesfeld CL, Sugita M, Thomas MA, Chang S, Coll G, Fruttiger MA, Richardson WD, Brooks PC, Cheresh DA. Integrins αvβ3, and αvβ5, are selectively expressed in active human retinal and choroidal neovascular membranes Investigative Ophthalmology and Visual Science. 37: S124.  0.011
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