Tim Machado - Publications

Affiliations: 
Stanford University, Palo Alto, CA 

11 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Chandrashekhar V, Tward DJ, Crowley D, Crow AK, Wright MA, Hsueh BY, Gore F, Machado TA, Branch A, Rosenblum JS, Deisseroth K, Vogelstein JT. CloudReg: automatic terabyte-scale cross-modal brain volume registration. Nature Methods. PMID 34253927 DOI: 10.1038/s41592-021-01218-z  0.35
2020 Kauvar IV, Machado TA, Yuen E, Kochalka J, Choi M, Allen WE, Wetzstein G, Deisseroth K. Cortical Observation by Synchronous Multifocal Optical Sampling Reveals Widespread Population Encoding of Actions. Neuron. PMID 32433908 DOI: 10.1016/J.Neuron.2020.04.023  0.686
2019 Marshel JH, Kim YS, Machado TA, Quirin S, Benson B, Kadmon J, Raja C, Chibukhchyan A, Ramakrishnan C, Inoue M, Shane JC, McKnight DJ, Yoshizawa S, Kato HE, Ganguli S, et al. Cortical layer-specific critical dynamics triggering perception. Science (New York, N.Y.). PMID 31320556 DOI: 10.1126/Science.Aaw5202  0.677
2018 Berens P, Freeman J, Deneux T, Chenkov N, McColgan T, Speiser A, Macke JH, Turaga SC, Mineault P, Rupprecht P, Gerhard S, Friedrich RW, Friedrich J, Paninski L, Pachitariu M, ... ... Machado TA, et al. Community-based benchmarking improves spike rate inference from two-photon calcium imaging data. Plos Computational Biology. 14: e1006157. PMID 29782491 DOI: 10.1371/Journal.Pcbi.1006157  0.582
2016 Bikoff JB, Gabitto MI, Rivard AF, Drobac E, Machado TA, Miri A, Brenner-Morton S, Famojure E, Diaz C, Alvarez FJ, Mentis GZ, Jessell TM. Spinal Inhibitory Interneuron Diversity Delineates Variant Motor Microcircuits. Cell. PMID 26949184 DOI: 10.1016/J.Cell.2016.01.027  0.691
2016 Pnevmatikakis EA, Soudry D, Gao Y, Machado TA, Merel J, Pfau D, Reardon T, Mu Y, Lacefield C, Yang W, Ahrens M, Bruno R, Jessell TM, Peterka DS, Yuste R, et al. Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data. Neuron. PMID 26774160 DOI: 10.1016/J.Neuron.2015.11.037  0.651
2015 Machado TA, Pnevmatikakis E, Paninski L, Jessell TM, Miri A. Primacy of Flexor Locomotor Pattern Revealed by Ancestral Reversion of Motor Neuron Identity. Cell. 162: 338-50. PMID 26186188 DOI: 10.1016/J.Cell.2015.06.036  0.739
2014 Buesing L, Machado TA, Cunningham JP, Paninski L. Clustered factor analysis of multineuronal spike data Advances in Neural Information Processing Systems. 4: 3500-3508.  0.484
2012 Doi E, Gauthier JL, Field GD, Shlens J, Sher A, Greschner M, Machado TA, Jepson LH, Mathieson K, Gunning DE, Litke AM, Paninski L, Chichilnisky EJ, Simoncelli EP. Efficient coding of spatial information in the primate retina. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 16256-64. PMID 23152609 DOI: 10.1523/Jneurosci.4036-12.2012  0.703
2010 Field GD, Gauthier JL, Sher A, Greschner M, Machado TA, Jepson LH, Shlens J, Gunning DE, Mathieson K, Dabrowski W, Paninski L, Litke AM, Chichilnisky EJ. Functional connectivity in the retina at the resolution of photoreceptors. Nature. 467: 673-7. PMID 20930838 DOI: 10.1038/Nature09424  0.699
2010 Vogelstein JT, Packer AM, Machado TA, Sippy T, Babadi B, Yuste R, Paninski L. Fast nonnegative deconvolution for spike train inference from population calcium imaging. Journal of Neurophysiology. 104: 3691-704. PMID 20554834 DOI: 10.1152/Jn.01073.2009  0.599
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