Andriy Y. Fedorov, Ph.D. - Publications

Affiliations: 
2009 College of William and Mary, Williamsburg, VA 
Area:
Computer Science

62 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Zwanenburg A, Vallières M, Abdalah MA, Aerts HJWL, Andrearczyk V, Apte A, Ashrafinia S, Bakas S, Beukinga RJ, Boellaard R, Bogowicz M, Boldrini L, Buvat I, Cook GJR, Davatzikos C, ... ... Fedorov AY, et al. The Image Biomarker Standardization Initiative: Standardized Quantitative Radiomics for High-Throughput Image-based Phenotyping. Radiology. 191145. PMID 32154773 DOI: 10.1148/Radiol.2020191145  0.323
2019 Herz C, MacNeil K, Behringer PA, Tokuda J, Mehrtash A, Mousavi P, Kikinis R, Fennessy FM, Tempany CM, Tuncali K, Fedorov A. Open Source Platform for Transperineal In-bore MRI-guided Targeted Prostate Biopsy. Ieee Transactions On Bio-Medical Engineering. PMID 31135342 DOI: 10.1109/Tbme.2019.2918731  0.322
2018 Herrmann MD, Clunie DA, Fedorov A, Doyle SW, Pieper S, Klepeis V, Le LP, Mutter GL, Milstone DS, Schultz TJ, Kikinis R, Kotecha GK, Hwang DH, Andriole KP, Iafrate AJ, et al. Implementing the DICOM Standard for Digital Pathology. Journal of Pathology Informatics. 9: 37. PMID 30533276 DOI: 10.4103/Jpi.Jpi_42_18  0.337
2018 Fedorov A, Schwier M, Clunie D, Herz C, Pieper S, Kikinis R, Tempany C, Fennessy F. An annotated test-retest collection of prostate multiparametric MRI. Scientific Data. 5: 180281. PMID 30512014 DOI: 10.1038/Sdata.2018.281  0.41
2018 Mehrtash A, Ghafoorian M, Pernelle G, Ziaei A, Heslinga FG, Tuncali K, Fedorov A, Kikinis R, Tempany CM, Wells WM, Abolmaesumi P, Kapur T. Automatic Needle Segmentation and Localization in MRI with 3D Convolutional Neural Networks: Application to MRI-targeted Prostate Biopsy. Ieee Transactions On Medical Imaging. PMID 30334789 DOI: 10.1109/Tmi.2018.2876796  0.391
2018 Malyarenko D, Fedorov A, Bell L, Prah M, Hectors S, Arlinghaus L, Muzi M, Solaiyappan M, Jacobs M, Fung M, Shukla-Dave A, McManus K, Boss M, Taouli B, Yankeelov TE, et al. Toward uniform implementation of parametric map Digital Imaging and Communication in Medicine standard in multisite quantitative diffusion imaging studies. Journal of Medical Imaging (Bellingham, Wash.). 5: 011006. PMID 29134189 DOI: 10.1117/1.Jmi.5.1.011006  0.381
2018 Newitt DC, Malyarenko D, Chenevert TL, Quarles CC, Bell L, Fedorov A, Fennessy F, Jacobs MA, Solaiyappan M, Hectors S, Taouli B, Muzi M, Kinahan PE, Schmainda KM, Prah MA, et al. Multisite concordance of apparent diffusion coefficient measurements across the NCI Quantitative Imaging Network. Journal of Medical Imaging (Bellingham, Wash.). 5: 011003. PMID 29021993 DOI: 10.1117/1.Jmi.5.1.011003  0.316
2018 Hassanzadeh E, Alessandrino F, Olubiyi OI, Glazer DI, Mulkern RV, Fedorov A, Tempany CM, Fennessy FM. Comparison of quantitative apparent diffusion coefficient parameters with prostate imaging reporting and data system V2 assessment for detection of clinically significant peripheral zone prostate cancer Abdominal Radiology. 43: 1237-1244. PMID 28840280 DOI: 10.1007/S00261-017-1297-Y  0.342
2018 Langkilde F, Kobus T, Fedorov A, Dunne R, Tempany C, Mulkern RV, Maier SE. Evaluation of fitting models for prostate tissue characterization using extended-range b-factor diffusion-weighted imaging Magnetic Resonance in Medicine. 79: 2346-2358. PMID 28718517 DOI: 10.1002/Mrm.26831  0.311
2017 van Griethuysen JJM, Fedorov A, Parmar C, Hosny A, Aucoin N, Narayan V, Beets-Tan RGH, Fillion-Robin JC, Pieper S, Aerts HJWL. Computational Radiomics System to Decode the Radiographic Phenotype. Cancer Research. 77: e104-e107. PMID 29092951 DOI: 10.1158/0008-5472.Can-17-0339  0.402
2017 Herz C, Fillion-Robin JC, Onken M, Riesmeier J, Lasso A, Pinter C, Fichtinger G, Pieper S, Clunie D, Kikinis R, Fedorov A. dcmqi: An Open Source Library for Standardized Communication of Quantitative Image Analysis Results Using DICOM. Cancer Research. 77: e87-e90. PMID 29092948 DOI: 10.1158/0008-5472.Can-17-0336  0.416
2017 Chennubhotla C, Clarke LP, Fedorov A, Foran D, Harris G, Helton E, Nordstrom R, Prior F, Rubin D, Saltz JH, Shalley E, Sharma A. An Assessment of Imaging Informatics for Precision Medicine in Cancer. Yearbook of Medical Informatics. 26: 110-119. PMID 29063549 DOI: 10.15265/Iy-2017-041  0.404
2017 Mehrtash A, Pesteie M, Hetherington J, Behringer PA, Kapur T, Wells WM, Rohling R, Fedorov A, Abolmaesumi P. DeepInfer: Open-Source Deep Learning Deployment Toolkit for Image-Guided Therapy. Proceedings of Spie--the International Society For Optical Engineering. 10135. PMID 28615794 DOI: 10.1117/12.2256011  0.378
2017 Mehrtash A, Sedghi A, Ghafoorian M, Taghipour M, Tempany CM, Wells WM, Kapur T, Mousavi P, Abolmaesumi P, Fedorov A. Classification of Clinical Significance of MRI Prostate Findings Using 3D Convolutional Neural Networks. Proceedings of Spie--the International Society For Optical Engineering. 10134. PMID 28615793 DOI: 10.1117/12.2277123  0.355
2017 Fedorov A, Vangel MG, Tempany CM, Fennessy FM. Multiparametric Magnetic Resonance Imaging of the Prostate: Repeatability of Volume and Apparent Diffusion Coefficient Quantification. Investigative Radiology. 52: 538-546. PMID 28463931 DOI: 10.1097/Rli.0000000000000382  0.344
2017 Velez E, Fedorov A, Tuncali K, Olubiyi O, Allard CB, Kibel AS, Tempany CM. Pathologic correlation of transperineal in-bore 3-Tesla magnetic resonance imaging-guided prostate biopsy samples with radical prostatectomy specimen. Abdominal Radiology (New York). PMID 28293720 DOI: 10.1007/S00261-017-1102-Y  0.349
2016 Kapur T, Pieper S, Fedorov A, Fillion-Robin JC, Halle M, O'Donnell L, Lasso A, Ungi T, Pinter C, Finet J, Pujol S, Jagadeesan J, Tokuda J, Norton I, Estepar RS, et al. Increasing the impact of medical image computing using community-based open-access hackathons: The NA-MIC and 3D Slicer experience. Medical Image Analysis. PMID 27498015 DOI: 10.1016/J.Media.2016.06.035  0.367
2016 Li X, Li C, Fedorov A, Kapur T, Yang X. Segmentation of prostate from ultrasound images using level sets on active band and intensity variation across edges. Medical Physics. 43: 3090. PMID 27277056 DOI: 10.1118/1.4950721  0.354
2016 Fedorov A, Clunie D, Ulrich E, Bauer C, Wahle A, Brown B, Onken M, Riesmeier J, Pieper S, Kikinis R, Buatti J, Beichel RR. DICOM for quantitative imaging biomarker development: a standards based approach to sharing clinical data and structured PET/CT analysis results in head and neck cancer research. Peerj. 4: e2057. PMID 27257542 DOI: 10.7717/Peerj.2057  0.417
2016 Fedorov A, Tuncali K, Panych LP, Fairhurst J, Hassanzadeh E, Seethamraju RT, Tempany CM, Maier SE. Segmented Diffusion-Weighted Imaging of the Prostate: Application to Transperineal In-bore 3T MR Image-guided Targeted Biopsy. Magnetic Resonance Imaging. PMID 27240900 DOI: 10.1016/J.Mri.2016.05.012  0.382
2016 Mehrtash A, Gupta SN, Shanbhag D, Miller JV, Kapur T, Fennessy FM, Kikinis R, Fedorov A. Bolus arrival time and its effect on tissue characterization with dynamic contrast-enhanced magnetic resonance imaging. Journal of Medical Imaging (Bellingham, Wash.). 3: 014503. PMID 26989759 DOI: 10.1117/1.Jmi.3.1.014503  0.364
2016 Mohrehkesh S, Fedorov A, Vishwanatha AB, Drakopoulos F, Kikinis R, Chrisochoides N. Large Scale Cloud-Based Deformable Registration for Image Guided Therapy Proceedings - 2016 Ieee 1st International Conference On Connected Health: Applications, Systems and Engineering Technologies, Chase 2016. 67-72. DOI: 10.1109/CHASE.2016.43  0.642
2015 Yamauchi FI, Penzkofer T, Fedorov A, Fennessy FM, Chu R, Maier SE, Tempany CM, Mulkern RV, Panych LP. Prostate cancer discrimination in the peripheral zone with a reduced field-of-view T(2)-mapping MRI sequence. Magnetic Resonance Imaging. 33: 525-30. PMID 25687187 DOI: 10.1016/J.Mri.2015.02.006  0.306
2015 Fennessy FM, Fedorov A, Penzkofer T, Kim KW, Hirsch MS, Vangel MG, Masry P, Flood TA, Chang MC, Tempany CM, Mulkern RV, Gupta SN. Quantitative pharmacokinetic analysis of prostate cancer DCE-MRI at 3T: comparison of two arterial input functions on cancer detection with digitized whole mount histopathological validation. Magnetic Resonance Imaging. 33: 886-94. PMID 25683515 DOI: 10.1016/J.Mri.2015.02.008  0.371
2015 Fedorov A, Penzkofer T, Hirsch MS, Flood TA, Vangel MG, Masry P, Tempany CM, Mulkern RV, Fennessy FM. The role of pathology correlation approach in prostate cancer index lesion detection and quantitative analysis with multiparametric MRI. Academic Radiology. 22: 548-55. PMID 25683501 DOI: 10.1016/J.Acra.2014.12.022  0.346
2015 Tilak G, Tuncali K, Song S, Tokuda J, Olubiyi O, Fennessy F, Fedorov A, Penzkofer T, Tempany C, Hata N. 3T MR Guided in bore transperineal prostate biopsy: A Comparison of robotic and manual needle-guidance templates Journal of Magnetic Resonance Imaging. 42: 63-71. PMID 25263213 DOI: 10.1002/Jmri.24770  0.322
2015 Penzkofer T, Tuncali K, Fedorov A, Song SE, Tokuda J, Fennessy FM, Vangel MG, Kibel AS, Mulkern RV, Wells WM, Hata N, Tempany CM. Transperineal in-bore 3-T MR imaging-guided prostate biopsy: a prospective clinical observational study. Radiology. 274: 170-80. PMID 25222067 DOI: 10.1148/Radiol.14140221  0.34
2014 Murciano-Goroff YR, Wolfsberger LD, Parekh A, Fennessy FM, Tuncali K, Orio PF, Niedermayr TR, Suh WW, Devlin PM, Tempany CM, Sugar EH, O'Farrell DA, Steele G, O'Leary M, Buzurovic I, ... ... Fedorov AY, et al. Variability in MRI vs. ultrasound measures of prostate volume and its impact on treatment recommendations for favorable-risk prostate cancer patients: a case series. Radiation Oncology (London, England). 9: 200. PMID 25205146 DOI: 10.1186/1748-717X-9-200  0.322
2014 Liu Y, Kot A, Drakopoulos F, Yao C, Fedorov A, Enquobahrie A, Clatz O, Chrisochoides NP. An ITK implementation of a physics-based non-rigid registration method for brain deformation in image-guided neurosurgery. Frontiers in Neuroinformatics. 8: 33. PMID 24778613 DOI: 10.3389/Fninf.2014.00033  0.732
2014 Huang W, Li X, Chen Y, Li X, Chang MC, Oborski MJ, Malyarenko DI, Muzi M, Jajamovich GH, Fedorov A, Tudorica A, Gupta SN, Laymon CM, Marro KI, Dyvorne HA, et al. Variations of dynamic contrast-enhanced magnetic resonance imaging in evaluation of breast cancer therapy response: a multicenter data analysis challenge. Translational Oncology. 7: 153-66. PMID 24772219 DOI: 10.1593/Tlo.13838  0.315
2014 Chenevert TL, Malyarenko DI, Newitt D, Li X, Jayatilake M, Tudorica A, Fedorov A, Kikinis R, Liu TT, Muzi M, Oborski MJ, Laymon CM, Li X, Thomas Y, Jayashree KC, et al. Errors in Quantitative Image Analysis due to Platform-Dependent Image Scaling. Translational Oncology. 7: 65-71. PMID 24772209 DOI: 10.1593/Tlo.13811  0.404
2014 Fedorov A, Wells WM, Kikinis R, Tempany CM, Vangel MG. Application of tolerance limits to the characterization of image registration performance. Ieee Transactions On Medical Imaging. 33: 1541-50. PMID 24759985 DOI: 10.1109/Tmi.2014.2317796  0.411
2014 Fedorov A, Fluckiger J, Ayers GD, Li X, Gupta SN, Tempany C, Mulkern R, Yankeelov TE, Fennessy FM. A comparison of two methods for estimating DCE-MRI parameters via individual and cohort based AIFs in prostate cancer: a step towards practical implementation. Magnetic Resonance Imaging. 32: 321-9. PMID 24560287 DOI: 10.1016/J.Mri.2014.01.004  0.379
2014 Song S, Tuncali K, Tokuda J, Fedorov A, Penzkofer T, Fennessy F, Tempany CM, Yoshimitsu K, Magill J, Hata N. Workflow assessment of 3T MRI-guided transperineal targeted prostate biopsy using a robotic needle guidance Proceedings of Spie. 9036: 903612. DOI: 10.1117/12.2043766  0.348
2013 Hegde JV, Mulkern RV, Panych LP, Fennessy FM, Fedorov A, Maier SE, Tempany CM. Multiparametric MRI of prostate cancer: an update on state-of-the-art techniques and their performance in detecting and localizing prostate cancer. Journal of Magnetic Resonance Imaging : Jmri. 37: 1035-54. PMID 23606141 DOI: 10.1002/Jmri.23860  0.324
2013 Egger J, Kapur T, Fedorov A, Pieper S, Miller JV, Veeraraghavan H, Freisleben B, Golby AJ, Nimsky C, Kikinis R. GBM volumetry using the 3D Slicer medical image computing platform. Scientific Reports. 3: 1364. PMID 23455483 DOI: 10.1038/Srep01364  0.339
2012 Pursley J, Risholm P, Fedorov A, Tuncali K, Fennessy FM, Wells WM, Tempany CM, Cormack RA. A Bayesian nonrigid registration method to enhance intraoperative target definition in image-guided prostate procedures through uncertainty characterization. Medical Physics. 39: 6858-67. PMID 23127078 DOI: 10.1118/1.4760992  0.408
2012 Tokuda J, Tuncali K, Iordachita I, Song SE, Fedorov A, Oguro S, Lasso A, Fennessy FM, Tempany CM, Hata N. In-bore setup and software for 3T MRI-guided transperineal prostate biopsy Physics in Medicine and Biology. 57: 5823-5840. PMID 22951350 DOI: 10.1088/0031-9155/57/18/5823  0.363
2012 Fennessy FM, Fedorov A, Gupta SN, Schmidt EJ, Tempany CM, Mulkern RV. Practical considerations in T1 mapping of prostate for dynamic contrast enhancement pharmacokinetic analyses. Magnetic Resonance Imaging. 30: 1224-33. PMID 22898681 DOI: 10.1016/J.Mri.2012.06.011  0.332
2012 Fedorov A, Beichel R, Kalpathy-Cramer J, Finet J, Fillion-Robin JC, Pujol S, Bauer C, Jennings D, Fennessy F, Sonka M, Buatti J, Aylward S, Miller JV, Pieper S, Kikinis R. 3D Slicer as an image computing platform for the Quantitative Imaging Network. Magnetic Resonance Imaging. 30: 1323-41. PMID 22770690 DOI: 10.1016/J.Mri.2012.05.001  0.411
2012 Levy MA, Freymann JB, Kirby JS, Fedorov A, Fennessy FM, Eschrich SA, Berglund AE, Fenstermacher DA, Tan Y, Guo X, Casavant TL, Brown BJ, Braun TA, Dekker A, Roelofs E, et al. Informatics methods to enable sharing of quantitative imaging research data. Magnetic Resonance Imaging. 30: 1249-56. PMID 22770688 DOI: 10.1016/J.Mri.2012.04.007  0.384
2012 Fedorov A, Tuncali K, Fennessy FM, Tokuda J, Hata N, Wells WM, Kikinis R, Tempany CM. Image registration for targeted MRI-guided transperineal prostate biopsy. Journal of Magnetic Resonance Imaging : Jmri. 36: 987-92. PMID 22645031 DOI: 10.1002/Jmri.23688  0.434
2011 Fedorov A, Li X, Pohl KM, Bouix S, Styner M, Addicott M, Wyatt C, Daunais JB, Wells WM, Kikinis R. Atlas-guided segmentation of vervet monkey brain MRI. The Open Neuroimaging Journal. 5: 186-97. PMID 22253661 DOI: 10.2174/1874440001105010186  0.423
2011 Pohl KM, Konukoglu E, Novellas S, Ayache N, Fedorov A, Talos IF, Golby A, Wells WM, Kikinis R, Black PM. A new metric for detecting change in slowly evolving brain tumors: validation in meningioma patients. Neurosurgery. 68: 225-33. PMID 21206318 DOI: 10.1227/Neu.0B013E31820783D5  0.404
2011 Pursley J, Risholm P, Fedorov A, Tuncali K, Fennessy F, Wells W. WE‐E‐BRC‐08: Evaluation of a Probabilistic Non‐Rigid Registration Method for Improved Intra‐Operative Target Definition in 125‐I Permanent Prostate Implants Medical Physics. 38: 3820-3820. DOI: 10.1118/1.3613386  0.352
2010 Liu Y, Fedorov A, Kikinis R, Chrisochoides N. Non-Rigid Registration for brain MRI: Faster and cheaper International Journal of Functional Informatics and Personalised Medicine. 3: 48-57. DOI: 10.1504/Ijfipm.2010.033245  0.701
2009 Liu Y, Fedorov A, Kikinis R, Chrisochoides N. Real-time non-rigid registration of medical images on a cooperative parallel architecture 2009 Ieee International Conference On Bioinformatics and Biomedicine, Bibm 2009. 401-404. DOI: 10.1109/BIBM.2009.10  0.6
2009 Chrisochoides N, Chernikov A, Fedorov A, Kot A, Linardakis L, Foteinos P. Towards exascale parallel delaunay mesh generation Proceedings of the 18th International Meshing Roundtable, Imr 2009. 319-336. DOI: 10.1007/978-3-642-04319-2_19  0.658
2008 Fedorov A, Chrisochoides N. Toward improved tumor targeting for image guided neurosurgery with intra-operative parametric search using distributed and grid computing Ipdps Miami 2008 - Proceedings of the 22nd Ieee International Parallel and Distributed Processing Symposium, Program and Cd-Rom. DOI: 10.1109/IPDPS.2008.4536428  0.64
2008 Joshi B, Fedorov A, Chrisochoides N, Warfield SK, Ourselin S. A quantitative assessment of approaches to mesh generation for surgical simulation Engineering With Computers. 24: 417-430. DOI: 10.1007/S00366-008-0088-Z  0.614
2008 Fedorov A, Billet E, Prastawa M, Gerig G, Radmanesh A, Warfield SK, Kikinis R, Chrisochoides N. Evaluation of brain MRI alignment with the robust hausdorff distance measures Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5358: 594-603. DOI: 10.1007/978-3-540-89639-5_57  0.569
2008 Fedorov A, Chrisochoides N. Tetrahedral mesh generation for non-rigid registration of brain MRI: Analysis of the requirements and evaluation of solutions Proceedings of the 17th International Meshing Roundtable, Imr 2008. 55-72.  0.66
2007 Archip N, Clatz O, Whalen S, Kacher D, Fedorov A, Kot A, Chrisochoides N, Jolesz F, Golby A, Black PM, Warfield SK. Non-rigid alignment of pre-operative MRI, fMRI, and DT-MRI with intra-operative MRI for enhanced visualization and navigation in image-guided neurosurgery. Neuroimage. 35: 609-24. PMID 17289403 DOI: 10.1016/J.Neuroimage.2006.11.060  0.696
2007 Joshi B, Fedorov A, Chrisochoides N, Warfield S, Ourselin S. Application-driven quantitative assessment of approaches to mesh generation 2007 4th Ieee International Symposium On Biomedical Imaging: From Nano to Macro - Proceedings. 1160-1163. DOI: 10.1109/ISBI.2007.357063  0.574
2007 Chrisochoides N, Fedorov A, Kot A, Archip N, Goldberg-Zimring D, Kacher D, Whalen S, Kikinis R, Jolesz F, Clatz O, Warfield SK, Black PM, Golby A. Grid-enabled software environment for enhanced dynamic data-driven visualization and navigation during image-guided neurosurgery Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4487: 980-987.  0.68
2006 Chrisochoides N, Fedorov A, Kot A, Archip N, Black P, Clatz O, Golby A, Kikinis R, Warfield SK. Toward real-time image guided neurosurgery using distributed and grid computing Proceedings of the 2006 Acm/Ieee Conference On Supercomputing, Sc'06. DOI: 10.1145/1188455.1188536  0.69
2006 Archip N, Fedorov A, Lloyd B, Chrisochoides N, Golby A, Black PM, Warfield SK. Integration of patient specific modeling and advanced image processing techniques for image guided neurosurgery Progress in Biomedical Optics and Imaging - Proceedings of Spie. 6141. DOI: 10.1117/12.653930  0.627
2006 Rivara MC, Calderon C, Fedorov A, Chrisochoides N. Parallel decoupled terminal-edge bisection method for 3D mesh generation Engineering With Computers. 22: 111-119. DOI: 10.1007/S00366-006-0013-2  0.576
2006 Fedorov A, Chrisochoides N, Kikinis R, Warfield SK. An evaluation of three approaches to tetrahedral mesh generation for deformable registration of brain MR images 2006 3rd Ieee International Symposium On Biomedical Imaging: From Nano to Macro - Proceedings. 2006: 658-661.  0.624
2004 Fedorov A, Chrisochoides N. Communication support for dynamic load balancing of irregular adaptive applications Proceedings of the International Conference On Parallel Processing Workshops. 555-562. DOI: 10.1109/ICPPW.2004.1328068  0.54
2004 Fedorov A, Chrisochoides N. Location management in object-based distributed computing Proceedings - Ieee International Conference On Cluster Computing, Iccc. 299-308. DOI: 10.1109/CLUSTR.2004.1392627  0.56
2003 Chrisochoides N, Fedorov A, Lowekamp BB, Zangrilli M, Lee C. A case study of optimistic computing on the grid: Parallel mesh generation Proceedings - International Parallel and Distributed Processing Symposium, Ipdps 2003. DOI: 10.1109/IPDPS.2003.1213374  0.584
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