Year |
Citation |
Score |
2022 |
Dong X, Qin LY, Gong Z, Qin S, Zhou HX, Tang C. Preferential Interactions of a Crowder Protein with the Specific Binding Site of a Native Protein Complex. The Journal of Physical Chemistry Letters. 13: 792-800. PMID 35044179 DOI: 10.1021/acs.jpclett.1c03794 |
0.32 |
|
2020 |
Ghosh A, Zhou HX. Determinants for Fusion Speed of Biomolecular Droplets. Angewandte Chemie (International Ed. in English). PMID 32767698 DOI: 10.1002/Anie.202006711 |
0.323 |
|
2020 |
Paulino J, Yi M, Hung I, Gan Z, Wang X, Chekmenev EY, Zhou HX, Cross TA. Functional stability of water wire-carbonyl interactions in an ion channel. Proceedings of the National Academy of Sciences of the United States of America. PMID 32414918 DOI: 10.1073/Pnas.2001083117 |
0.318 |
|
2019 |
Ghosh A, Mazarakos K, Zhou HX. Three archetypical classes of macromolecular regulators of protein liquid-liquid phase separation. Proceedings of the National Academy of Sciences of the United States of America. PMID 31506351 DOI: 10.1073/Pnas.1907849116 |
0.303 |
|
2019 |
Qin S, Zhou HX. Calculation of Second Virial Coefficients of Atomistic Proteins Using Fast Fourier Transform. The Journal of Physical Chemistry. B. PMID 31490691 DOI: 10.1021/Acs.Jpcb.9B06808 |
0.361 |
|
2019 |
Nguemaha V, Qin S, Zhou H. Transfer Free Energies of Test Proteins Into Crowded Protein Solutions Have Simple Dependence on Crowder Concentration Frontiers in Molecular Biosciences. 6: 39. PMID 31192219 DOI: 10.3389/Fmolb.2019.00039 |
0.388 |
|
2019 |
Wu D, Zhou HX. Designed Mutations Alter the Binding Pathways of an Intrinsically Disordered Protein. Scientific Reports. 9: 6172. PMID 30992509 DOI: 10.1038/S41598-019-42717-6 |
0.364 |
|
2019 |
Ghosh A, Smith PES, Qin S, Yi M, Zhou HX. Both Ligands and Macromolecular Crowders Preferentially Bind to Closed Conformations of Maltose Binding Protein. Biochemistry. PMID 30950267 DOI: 10.1021/Acs.Biochem.9B00154 |
0.417 |
|
2019 |
Paulino J, Pang X, Hung I, Zhou HX, Cross TA. Influenza A M2 Channel Clustering at High Protein/Lipid Ratios: Viral Budding Implications. Biophysical Journal. PMID 30819568 DOI: 10.1016/J.Bpj.2019.01.042 |
0.385 |
|
2018 |
Guo C, Zhou HX. Fatty Acids Compete with Aβ in Binding to Serum Albumin by Quenching its Conformational Flexibility. Biophysical Journal. PMID 30580919 DOI: 10.1016/J.Bpj.2018.11.3133 |
0.319 |
|
2018 |
Nguemaha V, Qin S, Zhou H. Atomistic Modeling of Intrinsically Disordered Proteins Under Polyethylene Glycol Crowding: Quantitative Comparison with Experimental Data and Implication of Protein-Crowder Attraction. Journal of Physical Chemistry B. 122: 11262-11270. PMID 30230839 DOI: 10.1021/Acs.Jpcb.8B07066 |
0.388 |
|
2018 |
Hicks A, Zhou HX. Temperature-induced collapse of a disordered peptide observed by three sampling methods in molecular dynamics simulations. The Journal of Chemical Physics. 149: 072313. PMID 30134733 DOI: 10.1063/1.5027409 |
0.311 |
|
2018 |
Zhou HX, Nguemaha V, Mazarakos K, Qin S. Why Do Disordered and Structured Proteins Behave Differently in Phase Separation? Trends in Biochemical Sciences. PMID 29716768 DOI: 10.1016/J.Tibs.2018.03.007 |
0.338 |
|
2018 |
Nguemaha V, Zhou HX. Liquid-Liquid Phase Separation of Patchy Particles Illuminates Diverse Effects of Regulatory Components on Protein Droplet Formation. Scientific Reports. 8: 6728. PMID 29712961 DOI: 10.1038/S41598-018-25132-1 |
0.327 |
|
2018 |
Banks A, Qin S, Weiss KL, Stanley CB, Zhou HX. Intrinsically Disordered Protein Exhibits Both Compaction and Expansion under Macromolecular Crowding. Biophysical Journal. 114: 1067-1079. PMID 29539394 DOI: 10.1016/J.Bpj.2018.01.011 |
0.422 |
|
2018 |
Campitelli P, Guo J, Zhou HX, Ozkan SB. A Hinge-Shift Mechanism Modulates Allosteric Regulations in Human Pin1. The Journal of Physical Chemistry. B. PMID 29361231 DOI: 10.1021/Acs.Jpcb.7B11971 |
0.355 |
|
2018 |
Zhou HX, Pang X. Electrostatic Interactions in Protein Structure, Folding, Binding, and Condensation. Chemical Reviews. PMID 29319301 DOI: 10.1021/Acs.Chemrev.7B00305 |
0.412 |
|
2017 |
Nguyen TH, Zhou HX, Minh DDL. Using the fast fourier transform in binding free energy calculations. Journal of Computational Chemistry. PMID 29270990 DOI: 10.1002/Jcc.25139 |
0.341 |
|
2017 |
Ou L, Matthews M, Pang X, Zhou HX. The dock-and-coalesce mechanism for the association of a WASP disordered region with the Cdc42 GTPase. The Febs Journal. PMID 28805312 DOI: 10.1111/Febs.14197 |
0.387 |
|
2017 |
Pang X, Zhou HX. Structural Modeling for the Open State of an NMDA Receptor. Journal of Structural Biology. PMID 28739483 DOI: 10.1016/J.Jsb.2017.07.005 |
0.334 |
|
2017 |
Pang X, Zhou HX. Rate Constants and Mechanisms of Protein-Ligand Binding. Annual Review of Biophysics. PMID 28375732 DOI: 10.1146/Annurev-Biophys-070816-033639 |
0.355 |
|
2017 |
Zhou HX. Gating Motions and Stationary Gating Properties of Ionotropic Glutamate Receptors: Computation Meets Electrophysiology. Accounts of Chemical Research. PMID 28186717 DOI: 10.1021/Acs.Accounts.6B00598 |
0.399 |
|
2017 |
Campitelli P, Zhou H, Ghirlanda G, Ozkan SB. Dynamic Flexibility Index Sheds Light on Pin1 Allostery Biophysical Journal. 112: 317a. DOI: 10.1016/J.Bpj.2016.11.1720 |
0.376 |
|
2016 |
Guo C, Zhou HX. Unidirectional allostery in the regulatory subunit RIα facilitates efficient deactivation of protein kinase A. Proceedings of the National Academy of Sciences of the United States of America. PMID 27791125 DOI: 10.1073/Pnas.1610142113 |
0.327 |
|
2016 |
Qin S, Zhou HX. Protein folding, binding, and droplet formation in cell-like conditions. Current Opinion in Structural Biology. 43: 28-37. PMID 27771543 DOI: 10.1016/J.Sbi.2016.10.006 |
0.415 |
|
2016 |
Dai J, Zhou HX. Semiclosed Conformations of the Ligand-Binding Domains of NMDA Receptors during Stationary Gating. Biophysical Journal. 111: 1418-1428. PMID 27705765 DOI: 10.1016/J.Bpj.2016.08.010 |
0.364 |
|
2016 |
Guo J, Zhou HX. Allosteric activation of SENP1 by SUMO1 β-grasp domain involves a dock-and-coalesce mechanism. Elife. 5. PMID 27576863 DOI: 10.7554/Elife.18249 |
0.355 |
|
2016 |
Batra J, Tjong H, Zhou HX. Electrostatic effects on the folding stability of FKBP12. Protein Engineering, Design & Selection : Peds. PMID 27381026 DOI: 10.1093/Protein/Gzw014 |
0.384 |
|
2016 |
Qin S, Zhou HX. Fast Method for Computing Chemical Potentials and Liquid-Liquid Phase Equilibria of Macromolecular Solutions. The Journal of Physical Chemistry. B. PMID 27327881 DOI: 10.1021/Acs.Jpcb.6B01607 |
0.304 |
|
2016 |
Pang X, Zhou HX. Mechanism and rate constants of the Cdc42 GTPase binding with intrinsically disordered effectors. Proteins. PMID 26879470 DOI: 10.1002/Prot.25018 |
0.38 |
|
2016 |
Guo J, Zhou HX. Protein Allostery and Conformational Dynamics. Chemical Reviews. PMID 26876046 DOI: 10.1021/Acs.Chemrev.5B00590 |
0.411 |
|
2016 |
Wright AK, Batsomboon P, Dai J, Hung I, Zhou HX, Dudley GB, Cross TA. Differential Binding of Rimantadine Enantiomers to Influenza A M2 Proton Channel. Journal of the American Chemical Society. PMID 26804976 DOI: 10.1021/Jacs.5B13129 |
0.345 |
|
2016 |
Banks A, Weiss K, Stanley C, Zhou H. Small Angle Neutron Scattering of the Intrinsically Disordered Protein FlgM under Crowded Conditions Biophysical Journal. 110: 560a. DOI: 10.1016/J.Bpj.2015.11.2993 |
0.345 |
|
2016 |
Smith PES, Zhou H. Conformations and Exchange Dynamics of FlgM, an Intrinsically Disordered Protein, in Dilute and Crowded Conditions Studied by NMR Spectroscopy Biophysical Journal. 110. DOI: 10.1016/J.Bpj.2015.11.2985 |
0.395 |
|
2016 |
Wu D, Zhou H. Characterizing protein-protein Nonspecific Interactions by Static Light Scattering Biophysical Journal. 110. DOI: 10.1016/J.Bpj.2015.11.298 |
0.381 |
|
2016 |
Cross TA, Fu R, Ekanayake EV, Miao Y, Paulino J, Anna W, Dai J, Zhou H. Functional, Dynamic and Structural Understanding of M2 Proton Channel from Influenza A and its Inhibition Biophysical Journal. 110: 192a. DOI: 10.1016/J.Bpj.2015.11.1069 |
0.366 |
|
2015 |
Miao Y, Fu R, Zhou HX, Cross TA. Dynamic Short Hydrogen Bonds in Histidine Tetrad of Full-Length M2 Proton Channel Reveal Tetrameric Structural Heterogeneity and Functional Mechanism. Structure (London, England : 1993). PMID 26526851 DOI: 10.1016/J.Str.2015.09.011 |
0.348 |
|
2015 |
Pang X, Zhou HX. Disorder-to-Order Transition of an Active-Site Loop Mediates the Allosteric Activation of Sortase A. Biophysical Journal. 109: 1706-15. PMID 26488662 DOI: 10.1016/J.Bpj.2015.08.039 |
0.317 |
|
2015 |
Guo J, Zhou HX. Dynamically Driven Protein Allostery Exhibits Disparate Responses for Fast and Slow Motions. Biophysical Journal. 108: 2771-4. PMID 26083915 DOI: 10.1016/J.Bpj.2015.04.035 |
0.34 |
|
2015 |
Dai J, Wollmuth LP, Zhou HX. Mechanism-Based Mathematical Model for Gating of Ionotropic Glutamate Receptors. The Journal of Physical Chemistry. B. PMID 25793415 DOI: 10.1021/Acs.Jpcb.5B00521 |
0.333 |
|
2015 |
Guo J, Pang X, Zhou H. Two Pathways Mediate Inter-Domain Allosteric Regulation in Pin1 Structure. 23: 237-247. PMID 25543254 DOI: 10.1016/J.Str.2014.11.009 |
0.365 |
|
2015 |
Dai J, Zhou HX. Reduced curvature of ligand-binding domain free-energy surface underlies partial agonism at NMDA receptors. Structure (London, England : 1993). 23: 228-36. PMID 25543253 DOI: 10.1016/J.Str.2014.11.012 |
0.312 |
|
2015 |
Qin S, Zhou H. The Nonrandom Nature of Weak Interactions between Proteins and Bystander Macromolecules in Cellular Environments Biophysical Journal. 108: 1-6. DOI: 10.1016/J.Bpj.2014.11.653 |
0.4 |
|
2015 |
Ghosh A, Zhou H. Macromolecular Crowder and Ligand Compete for the Closed Domain Cleft of Maltose Binding Protein Biophysical Journal. 108. DOI: 10.1016/J.Bpj.2014.11.342 |
0.381 |
|
2015 |
Miao Y, Fu R, Zhou H, Qin H, Cross TA. pH Titration and Acid Activation of the Full-Length Influenza a M2 Proton Channel in Lipid Bilayers Biophysical Journal. 108: 246a. DOI: 10.1016/J.Bpj.2014.11.1365 |
0.306 |
|
2014 |
Qin S, Zhou H. Further Development of the FFT-based Method for Atomistic Modeling of Protein Folding and Binding under Crowding: Optimization of Accuracy and Speed Journal of Chemical Theory and Computation. 10: 2824-2835. PMID 25061446 DOI: 10.1021/Ct5001878 |
0.354 |
|
2014 |
Greives N, Zhou H. Both protein dynamics and ligand concentration can shift the binding mechanism between conformational selection and induced fit Proceedings of the National Academy of Sciences of the United States of America. 111: 10197-10202. PMID 24982141 DOI: 10.1073/Pnas.1407545111 |
0.405 |
|
2014 |
Kazi R, Dai J, Sweeney C, Zhou HX, Wollmuth LP. Mechanical coupling maintains the fidelity of NMDA receptor-mediated currents. Nature Neuroscience. 17: 914-22. PMID 24859202 DOI: 10.1038/Nn.3724 |
0.317 |
|
2014 |
Pang X, Zhou HX. Design rules for selective binding of nuclear localization signals to minor site of importin α Plos One. 9. PMID 24609064 DOI: 10.1371/Journal.Pone.0091025 |
0.308 |
|
2014 |
Jean-Francois FL, Dai J, Yu L, Myrick A, Rubin E, Fajer PG, Song L, Zhou HX, Cross TA. Binding of MgtR, a Salmonella transmembrane regulatory peptide, to MgtC, a Mycobacterium tuberculosis virulence factor: a structural study. Journal of Molecular Biology. 426: 436-46. PMID 24140750 DOI: 10.1016/J.Jmb.2013.10.014 |
0.327 |
|
2014 |
Pang X, Zhou HX. Distinct mechanisms of a phosphotyrosyl peptide binding to two SH2 domains Journal of Theoretical and Computational Chemistry. 13. DOI: 10.1142/S0219633614400033 |
0.302 |
|
2014 |
Kazi R, Dai J, Daniel M, Zhou H, Wollmuth LP. Energetic Coupling of the Ligand Binding Domain to Pore Opening in NMDA Receptors Biophysical Journal. 106: 29a. DOI: 10.1016/J.Bpj.2013.11.212 |
0.332 |
|
2013 |
Qin S, Zhou H. Effects of Macromolecular Crowding on the Conformational Ensembles of Disordered Proteins. Journal of Physical Chemistry Letters. 4: 3429-3434. PMID 24312701 DOI: 10.1021/Jz401817X |
0.394 |
|
2013 |
Qin S, Zhou H. FFT-Based Method for Modeling Protein Folding and Binding under Crowding: Benchmarking on Ellipsoidal and All-Atom Crowders Journal of Chemical Theory and Computation. 9: 4633-4643. PMID 24187527 DOI: 10.1021/Ct4005195 |
0.418 |
|
2013 |
Miklos AC, Sumpter M, Zhou HX. Competitive interactions of ligands and macromolecular crowders with maltose binding protein. Plos One. 8: e74969. PMID 24124463 DOI: 10.1371/Journal.Pone.0074969 |
0.41 |
|
2013 |
Heymann G, Dai J, Li M, Silberberg SD, Zhou HX, Swartz KJ. Inter- and intrasubunit interactions between transmembrane helices in the open state of P2X receptor channels. Proceedings of the National Academy of Sciences of the United States of America. 110: E4045-54. PMID 24082111 DOI: 10.1073/Pnas.1311071110 |
0.33 |
|
2013 |
Dong H, Yi M, Cross TA, Zhou HX. Ab initio calculations and validation of the pH-dependent structures of the His37-Trp41 quartet, the heart of acid activation and proton conductance in the M2 protein of Influenza A virus. Chemical Science (Royal Society of Chemistry : 2010). 4: 2776-2787. PMID 23930201 DOI: 10.1039/C3Sc50293G |
0.344 |
|
2013 |
Qin S, Mittal J, Zhou HX. Folding free energy surfaces of three small proteins under crowding: validation of the postprocessing method by direct simulation. Physical Biology. 10: 045001. PMID 23912849 DOI: 10.1088/1478-3975/10/4/045001 |
0.38 |
|
2013 |
Qin S, Zhou H. Using the concept of transient complex for affinity predictions in CAPRI rounds 20-27 and beyond. Proteins. 81: 2229-2236. PMID 23873496 DOI: 10.1002/Prot.24366 |
0.377 |
|
2013 |
Zhou HX, Bates PA. Modeling protein association mechanisms and kinetics. Current Opinion in Structural Biology. 23: 887-93. PMID 23850142 DOI: 10.1016/J.Sbi.2013.06.014 |
0.359 |
|
2013 |
Moretti R, Fleishman SJ, Agius R, Torchala M, Bates PA, Kastritis PL, Rodrigues JP, Trellet M, Bonvin AM, Cui M, Rooman M, Gillis D, Dehouck Y, Moal I, Romero-Durana M, ... ... Zhou HX, et al. Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions. Proteins. 81: 1980-7. PMID 23843247 DOI: 10.1002/Prot.24356 |
0.346 |
|
2013 |
Zhou H, Qin S. Simulation and Modeling of Crowding Effects on the Thermodynamic and Kinetic Properties of Proteins with Atomic Details. Biophysical Reviews. 5: 207-215. PMID 23710260 DOI: 10.1007/S12551-013-0101-7 |
0.425 |
|
2013 |
Dai J, Zhou HX. An NMDA receptor gating mechanism developed from MD simulations reveals molecular details underlying subunit-specific contributions. Biophysical Journal. 104: 2170-81. PMID 23708357 DOI: 10.1016/J.Bpj.2013.04.013 |
0.326 |
|
2013 |
Qin S, Zhou H. PI2PE: A Suite of Web Servers for Predictions Ranging From Protein Structure to Binding Kinetics. Biophysical Reviews. 5: 41-46. PMID 23526172 DOI: 10.1007/S12551-012-0086-7 |
0.398 |
|
2013 |
Zhou HX, Cross TA. Influences of membrane mimetic environments on membrane protein structures Annual Review of Biophysics. 42: 361-392. PMID 23451886 DOI: 10.1146/Annurev-Biophys-083012-130326 |
0.329 |
|
2013 |
Zhou H. Influence of crowded cellular environments on protein folding, binding, and oligomerization: Biological consequences and potentials of atomistic modeling Febs Letters. 587: 1053-1061. PMID 23395796 DOI: 10.1016/J.Febslet.2013.01.064 |
0.387 |
|
2013 |
Zhou HX, Cross TA. Modeling the membrane environment has implications for membrane protein structure and function: Influenza A M2 protein Protein Science. 22: 381-394. PMID 23389890 DOI: 10.1002/Pro.2232 |
0.377 |
|
2013 |
Zhou H. Polymer crowders and protein crowders act similarly on protein folding stability Febs Letters. 587: 394-397. PMID 23353683 DOI: 10.1016/J.Febslet.2013.01.030 |
0.34 |
|
2013 |
Pang X, Zhou HX. Poisson-Boltzmann calculations: Van der Waals or molecular surface? Communications in Computational Physics. 13: 1-12. DOI: 10.4208/Cicp.270711.140911S |
0.307 |
|
2013 |
Yi M, Dong H, Zhou H. Molecular Basis for the Ion Selectivity of Gap Junction Channels Elucidated by Molecular Dynamics Simulations Biophysical Journal. 104: 4-9. DOI: 10.1016/J.Bpj.2012.11.2283 |
0.304 |
|
2013 |
Kazi R, Dai J, Jin T, Zhou H, Wollmuth LP. Biophysical Coupling Mechanisms in NMDA Receptor Gating Biophysical Journal. 104: 273a-274a. DOI: 10.1016/J.Bpj.2012.11.1534 |
0.338 |
|
2012 |
Qin S, Cai L, Zhou H. A method for computing association rate constants of atomistically represented proteins under macromolecular crowding Physical Biology. 9: 66008-66008. PMID 23197255 DOI: 10.1088/1478-3975/9/6/066008 |
0.404 |
|
2012 |
Pang X, Zhou KH, Qin S, Zhou H. Prediction and Dissection of Widely-Varying Association Rate Constants of Actin-Binding Proteins Plos Computational Biology. 8. PMID 23055910 DOI: 10.1371/Journal.Pcbi.1002696 |
0.398 |
|
2012 |
Greives N, Zhou H. BDflex: a method for efficient treatment of molecular flexibility in calculating protein-ligand binding rate constants from brownian dynamics simulations. Journal of Chemical Physics. 137: 135105-135105. PMID 23039617 DOI: 10.1063/1.4756913 |
0.372 |
|
2012 |
Phillip Y, Harel M, Khait R, Qin S, Zhou HX, Schreiber G. Contrasting factors on the kinetic path to protein complex formation diminish the effects of crowding agents Biophysical Journal. 103: 1011-1019. PMID 23009850 DOI: 10.1016/J.Bpj.2012.08.009 |
0.375 |
|
2012 |
Du J, Dong H, Zhou HX. Size matters in activation/inhibition of ligand-gated ion channels. Trends in Pharmacological Sciences. 33: 482-93. PMID 22789930 DOI: 10.1016/J.Tips.2012.06.005 |
0.328 |
|
2012 |
Zhou H, Pang X, Lu C. Rate constants and mechanisms of intrinsically disordered proteins binding to structured targets Physical Chemistry Chemical Physics. 14: 10466-10476. PMID 22744607 DOI: 10.1039/C2Cp41196B |
0.39 |
|
2012 |
Dong H, Sharma M, Zhou HX, Cross TA. Glycines: Role in α-helical membrane protein structures and a potential indicator of native conformation Biochemistry. 51: 4779-4789. PMID 22650985 DOI: 10.1021/Bi300090X |
0.359 |
|
2012 |
Cross TA, Dong H, Sharma M, Busath DD, Zhou HX. M2 protein from Influenza A: From multiple structures to biophysical and functional insights Current Opinion in Virology. 2: 128-133. PMID 22482709 DOI: 10.1016/J.Coviro.2012.01.005 |
0.369 |
|
2012 |
Pang X, Zhou HX. A common model for cytokine receptor activation: Combined scissor-like rotation and self-rotation of receptor dimer induced by class I cytokine Plos Computational Biology. 8. PMID 22412367 DOI: 10.1371/Journal.Pcbi.1002427 |
0.313 |
|
2012 |
Du J, Dong H, Zhou HX. Gating mechanism of a P2X4 receptor developed from normal mode analysis and molecular dynamics simulations. Proceedings of the National Academy of Sciences of the United States of America. 109: 4140-5. PMID 22378652 DOI: 10.1073/Pnas.1119546109 |
0.302 |
|
2012 |
Pang X, Zhou H. A Common Model for Cytokine Receptor Activation: Combined Scissor-Like Rotation and Self-Rotation of Receptor Dimer Induced by Class I Cytokine Biophysical Journal. 102. DOI: 10.1016/J.Bpj.2011.11.3620 |
0.313 |
|
2012 |
Qin S, Zhou H. Atomistic Modeling of Excluded-Volume and Soft Interactions in Crowded Environments Biophysical Journal. 102. DOI: 10.1016/J.Bpj.2011.11.2598 |
0.4 |
|
2012 |
Zhou KH, Pang X, Qin S, Zhou H. Prediction and Analysis of the Widely-Varying Association Rates of Actin-Binding Proteins Biophysical Journal. 102. DOI: 10.1016/J.Bpj.2011.11.2039 |
0.383 |
|
2012 |
Qin H, Miao Y, Fu R, Sharma M, Can T, Busath DD, Zhou H, Cross TA. Structural Insights for the Full Length Influenza A M2 Proton Channel in Native E. Coli Membranes Biophysical Journal. 102: 265a. DOI: 10.1016/J.Bpj.2011.11.1456 |
0.343 |
|
2011 |
Barreda JL, Zhou H. Theory and simulation of diffusion-influenced, stochastically gated ligand binding to buried sites Journal of Chemical Physics. 135: 145101-145101. PMID 22010732 DOI: 10.1063/1.3645000 |
0.376 |
|
2011 |
Pang X, Qin S, Zhou H. Rationalizing 5000-Fold Differences in Receptor-Binding Rate Constants of Four Cytokines Biophysical Journal. 101: 1175-1183. PMID 21889455 DOI: 10.1016/J.Bpj.2011.06.056 |
0.359 |
|
2011 |
Berezhkovskii AM, Szabo A, Zhou H. Diffusion-influenced ligand binding to buried sites in macromolecules and transmembrane channels. Journal of Chemical Physics. 135: 75103-75103. PMID 21861586 DOI: 10.1063/1.3609973 |
0.347 |
|
2011 |
Qin S, Zhou H. Structural Models of Protein-DNA Complexes Based on Interface Prediction and Docking Current Protein & Peptide Science. 12: 531-539. PMID 21787304 DOI: 10.2174/138920311796957694 |
0.354 |
|
2011 |
Dong H, Zhou HX. Atomistic mechanism for the activation and desensitization of an AMPA-subtype glutamate receptor. Nature Communications. 2: 354. PMID 21673675 DOI: 10.1038/Ncomms1362 |
0.335 |
|
2011 |
Zhou H. Rapid search for specific sites on DNA through conformational switch of nonspecifically bound proteins Proceedings of the National Academy of Sciences of the United States of America. 108: 8651-8656. PMID 21543711 DOI: 10.1073/Pnas.1101555108 |
0.377 |
|
2011 |
Zhou H. Equivalence of two approaches for modeling ion permeation through a transmembrane channel with an internal binding site. Journal of Chemical Physics. 134: 135101-135101. PMID 21476774 DOI: 10.1063/1.3575585 |
0.321 |
|
2011 |
Cai L, Zhou H. Theory and simulation on the kinetics of protein–ligand binding coupled to conformational change Journal of Chemical Physics. 134: 105101-105101. PMID 21405192 DOI: 10.1063/1.3561694 |
0.396 |
|
2011 |
Zhou H. A Theory for the Proton Transport of the Influenza Virus M2 Protein: Extensive Test against Conductance Data Biophysical Journal. 100: 912-921. PMID 21320435 DOI: 10.1016/J.Bpj.2011.01.002 |
0.357 |
|
2011 |
Cross TA, Sharma M, Yi M, Zhou HX. Influence of solubilizing environments on membrane protein structures Trends in Biochemical Sciences. 36: 117-125. PMID 20724162 DOI: 10.1016/J.Tibs.2010.07.005 |
0.341 |
|
2011 |
Sharma M, Li C, Busath DD, Zhou HX, Cross TA. Drug sensitivity, drug-resistant mutations, and structures of three conductance domains of viral porins Biochimica Et Biophysica Acta - Biomembranes. 1808: 538-546. PMID 20655872 DOI: 10.1016/J.Bbamem.2010.07.015 |
0.375 |
|
2011 |
Lee W, Zeng X, Zhou H, Bennett V, Yang W, Marszalek P. Full Reconstruction of a Vectorial Protein Folding Pathway by Afm and Smd: Insights Into the Co-Translational Folding of the Nascent-Polypeptide-Chain Biophysical Journal. 100: 483a. DOI: 10.1016/J.Bpj.2010.12.2829 |
0.381 |
|
2011 |
Qin S, Zhou H. Automated Prediction of Protein-Protein Association Rate Constants Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.2295 |
0.393 |
|
2011 |
Can T, Miao Y, Sharma M, Luca S, Qin H, Hung I, Truong M, Busath D, Zhou H, Cross T. Solid-State NMR Study on the Conductance Mechanism and Acid Activation of M2 Proton Channel Biophysical Journal. 100: 384a. DOI: 10.1016/J.Bpj.2010.12.2283 |
0.362 |
|
2011 |
Sharma M, Yi M, Dong H, Peterson E, Qin H, Busath DD, Zhou H, Cross TA. Influenza A/M2 Proton Channel: Structure in a Lipid Bilayer Provides Insights into the Conductance Mechanism Biophysical Journal. 100: 383a. DOI: 10.1016/J.Bpj.2010.12.2282 |
0.363 |
|
2010 |
Sharma M, Yi M, Dong H, Qin H, Peterson E, Busath DD, Zhou HX, Cross TA. Insight into the mechanism of the influenza A proton channel from a structure in a lipid bilayer Science. 330: 509-512. PMID 20966252 DOI: 10.1126/Science.1191750 |
0.358 |
|
2010 |
Lee W, Zeng X, Zhou HX, Bennett V, Yang W, Marszalek PE. Full reconstruction of a vectorial protein folding pathway by atomic force microscopy and molecular dynamics simulations. The Journal of Biological Chemistry. 285: 38167-72. PMID 20870713 DOI: 10.1074/Jbc.M110.179697 |
0.377 |
|
2010 |
Zhou H. Rate theories for biologists Quarterly Reviews of Biophysics. 43: 219-293. PMID 20691138 DOI: 10.1017/S0033583510000120 |
0.302 |
|
2010 |
Zhou H. Diffusion-Influenced Transport of Ions across a Transmembrane Channel with an Internal Binding Site Journal of Physical Chemistry Letters. 1: 1973-1976. PMID 20625440 DOI: 10.1021/Jz100683T |
0.357 |
|
2010 |
Dong H, Qin S, Zhou HX. Effects of macromolecular crowding on protein conformational changes. Plos Computational Biology. 6: e1000833. PMID 20617196 DOI: 10.1371/Journal.Pcbi.1000833 |
0.426 |
|
2010 |
Tjong H, Zhou H. The Folding Transition-State Ensemble of a Four-Helix Bundle Protein: Helix Propensity as a Determinant and Macromolecular Crowding as a Probe Biophysical Journal. 98: 2273-2280. PMID 20483336 DOI: 10.1016/J.Bpj.2010.01.052 |
0.344 |
|
2010 |
Qin S, Zhou H. Generalized fundamental measure theory for atomistic modeling of macromolecular crowding. Physical Review E. 81: 31919-31919. PMID 20365782 DOI: 10.1103/Physreve.81.031919 |
0.37 |
|
2010 |
Zhou H. From induced fit to conformational selection: a continuum of binding mechanism controlled by the timescale of conformational transitions. Biophysical Journal. 98. PMID 20303846 DOI: 10.1016/J.Bpj.2009.11.029 |
0.347 |
|
2010 |
Zeng X, Hu H, Zhou HX, Marszalek PE, Yang W. Equilibrium sampling for biomolecules under mechanical tension. Biophysical Journal. 98: 733-40. PMID 20159170 DOI: 10.1016/J.Bpj.2009.11.004 |
0.304 |
|
2010 |
Zhou HX, McCammon JA. The gates of ion channels and enzymes Trends in Biochemical Sciences. 35: 179-185. PMID 19926290 DOI: 10.1016/J.Tibs.2009.10.007 |
0.305 |
|
2010 |
Qin S, Zhou H. An Fft-Based Method for Modeling Crowding Effects when Both Test Proteins and Crowders are Represented at the Atomic Level Biophysical Journal. 98. DOI: 10.1016/J.Bpj.2009.12.3487 |
0.397 |
|
2010 |
Peterson E, Yi M, Zhou H, Sharma M, Cross TA, Busath D. Acid-Activation, Proton Transport Rate Saturation, and pH-Dependence of Amantadine Block for Influenza a M2 Protein Truncate (22-62) Biophysical Journal. 98: 503a. DOI: 10.1016/J.Bpj.2009.12.2739 |
0.322 |
|
2010 |
Sharma M, Yi M, Peterson E, Inouye D, Velez A, Can T, Qin H, Busath DD, Zhou H, Cross TA. Structural and Functional Studies of M2 Proton Channel From Influenza A Virus Biophysical Journal. 98: 47a-48a. DOI: 10.1016/J.Bpj.2009.12.273 |
0.367 |
|
2010 |
Dong H, Qin S, Zhou H. Crowding Effects on Protein Conformational Changes Biophysical Journal. 98: 25a. DOI: 10.1016/J.Bpj.2009.12.147 |
0.422 |
|
2010 |
Zhou H. Atomistic Simulations of Macromolecular Crowding Biophysical Journal. 98. DOI: 10.1016/J.Bpj.2009.12.032 |
0.397 |
|
2009 |
Maniccia AW, Yang W, Johnson JA, Li S, Tjong H, Zhou HX, Shaket LA, Yang JJ. Inverse tuning of metal binding affinity and protein stability by altering charged coordination residues in designed calcium binding proteins. Pmc Biophysics. 2: 11. PMID 20025729 DOI: 10.1186/1757-5036-2-11 |
0.326 |
|
2009 |
Batra J, Xu K, Qin S, Zhou H. Effect of Macromolecular Crowding on Protein Binding Stability: Modest Stabilization and Significant Biological Consequences Biophysical Journal. 97: 906-911. PMID 19651049 DOI: 10.1016/J.Bpj.2009.05.032 |
0.389 |
|
2009 |
Yi M, Cross TA, Zhou HX. Conformational heterogeneity of the M2 proton channel and a structural model for channel activation Proceedings of the National Academy of Sciences of the United States of America. 106: 13311-13316. PMID 19633188 DOI: 10.1073/Pnas.0906553106 |
0.382 |
|
2009 |
Zhou HX, Gilson MK. Theory of free energy and entropy in noncovalent binding. Chemical Reviews. 109: 4092-107. PMID 19588959 DOI: 10.1021/Cr800551W |
0.364 |
|
2009 |
Qin S, Zhou H. Atomistic modeling of macromolecular crowding predicts modest increases in protein folding and binding stability. Biophysical Journal. 97: 12-19. PMID 19580740 DOI: 10.1016/J.Bpj.2009.03.066 |
0.416 |
|
2009 |
Batra J, Xu K, Zhou H. Nonadditive effects of mixed crowding on protein stability. Proteins. 77: 133-138. PMID 19408299 DOI: 10.1002/Prot.22425 |
0.339 |
|
2009 |
Qin S, Zhou H. Dissection of the high rate constant for the binding of a ribotoxin to the ribosome. Proceedings of the National Academy of Sciences of the United States of America. 106: 6974-6979. PMID 19346475 DOI: 10.1073/Pnas.0900291106 |
0.378 |
|
2009 |
Zhou H. Crowding Effects of Membrane Proteins Journal of Physical Chemistry B. 113: 7995-8005. PMID 19323472 DOI: 10.1021/Jp8107446 |
0.302 |
|
2009 |
Zhou H. Association and dissociation kinetics of colicin E3 and immunity protein 3: convergence of theory and experiment. Protein Science. 12: 2379-2382. PMID 14500897 DOI: 10.1110/Ps.03216203 |
0.351 |
|
2009 |
Yi M, Cross TA, Zhou H. Conformational Heterogeneity Of The M2 Proton Channel: A Model For Channel Activation Biophysical Journal. 96: 668a. DOI: 10.1016/J.Bpj.2008.12.3530 |
0.367 |
|
2009 |
Batra J, Xu K, Zhou H. Effect of Macromolecular Crowding on Protein Folding Stability Biophysical Journal. 96: 5-8. DOI: 10.1016/J.Bpj.2008.12.3081 |
0.389 |
|
2009 |
Tjong H, Batra J, Zhou H. Computational Model to Predict Folding Stability of FKBP Biophysical Journal. 96. DOI: 10.1016/J.Bpj.2008.12.1497 |
0.406 |
|
2008 |
Tjong H, Zhou H. Accurate Calculations of Binding, Folding, and Transfer Free Energies by a Scaled Generalized Born Method. Journal of Chemical Theory and Computation. 4: 1733-1744. PMID 23468599 DOI: 10.1021/Ct8001656 |
0.316 |
|
2008 |
Li S, Yang W, Maniccia AW, Barrow D, Tjong H, Zhou HX, Yang JJ. Rational design of a conformation-switchable Ca2+- and Tb3+-binding protein without the use of multiple coupled metal-binding sites. The Febs Journal. 275: 5048-61. PMID 18785925 DOI: 10.1111/J.1742-4658.2008.06638.X |
0.354 |
|
2008 |
Yuan JM, Chyan CL, Zhou HX, Chung TY, Peng H, Ping G, Yang G. The effects of macromolecular crowding on the mechanical stability of protein molecules. Protein Science : a Publication of the Protein Society. 17: 2156-66. PMID 18780817 DOI: 10.1110/Ps.037325.108 |
0.361 |
|
2008 |
Yi M, Tjong H, Zhou HX. Spontaneous conformational change and toxin binding in alpha7 acetylcholine receptor: insight into channel activation and inhibition. Proceedings of the National Academy of Sciences of the United States of America. 105: 8280-5. PMID 18541920 DOI: 10.1073/Pnas.0710530105 |
0.38 |
|
2008 |
Tjong H, Zhou H. Prediction of Protein Solubility from Calculation of Transfer Free Energy Biophysical Journal. 95: 2601-2609. PMID 18515380 DOI: 10.1529/Biophysj.107.127746 |
0.339 |
|
2008 |
Zhou H. Effect of Mixed Macromolecular Crowding Agents on Protein Folding Proteins. 72: 1109-1113. PMID 18506780 DOI: 10.1002/Prot.22111 |
0.327 |
|
2008 |
Zhou H. A minimum-reaction-flux solution to master-equation models of protein folding. Journal of Chemical Physics. 128: 195104-195104. PMID 18500902 DOI: 10.1063/1.2929824 |
0.314 |
|
2008 |
Yi M, Cross TA, Zhou HX. A secondary gate as a mechanism for inhibition of the M2 proton channel by amantadine. The Journal of Physical Chemistry. B. 112: 7977-9. PMID 18476738 DOI: 10.1021/Jp800171M |
0.309 |
|
2008 |
Alsallaq R, Zhou H. Protein association with circular DNA: rate enhancement by nonspecific binding. Journal of Chemical Physics. 128: 115108-115108. PMID 18361623 DOI: 10.1063/1.2888996 |
0.319 |
|
2008 |
Qin S, Zhou H. Prediction of salt and mutational effects on the association rate of U1A protein and U1 small nuclear RNA stem/loop II. Journal of Physical Chemistry B. 112: 5955-5960. PMID 18154282 DOI: 10.1021/Jp075919K |
0.366 |
|
2008 |
Nymeyer H, Zhou HX. A method to determine dielectric constants in nonhomogeneous systems: application to biological membranes. Biophysical Journal. 94: 1185-93. PMID 17951302 DOI: 10.1529/Biophysj.107.117770 |
0.333 |
|
2008 |
Alsallaq R, Zhou H. Electrostatic rate enhancement and transient complex of protein-protein association. Proteins. 71: 320-335. PMID 17932929 DOI: 10.1002/Prot.21679 |
0.375 |
|
2008 |
Li C, Yi M, Hu J, Zhou HX, Cross TA. Solid-state NMR and MD simulations of the antiviral drug amantadine solubilized in DMPC bilayers Biophysical Journal. 94: 1295-1302. PMID 17890391 DOI: 10.1529/Biophysj.107.112482 |
0.312 |
|
2008 |
Zhou H. Protein folding in confined and crowded environments Archives of Biochemistry and Biophysics. 469: 76-82. PMID 17719556 DOI: 10.1016/J.Abb.2007.07.013 |
0.405 |
|
2008 |
Yang W, Nymeyer H, Zhou HX, Berg B, Brüschweiler R. Quantitative computer simulations of biomolecules: a snapshot. Journal of Computational Chemistry. 29: 668-72. PMID 17708535 DOI: 10.1002/Jcc.20819 |
0.354 |
|
2008 |
Zhou HX, Rivas G, Minton AP. Macromolecular crowding and confinement: Biochemical, biophysical, and potential physiological consequences Annual Review of Biophysics. 37: 375-397. DOI: 10.1146/Annurev.Biophys.37.032807.125817 |
0.303 |
|
2008 |
Zhou H, Qin S, Tjong H. Modeling Protein–Protein and Protein–Nucleic Acid Interactions: Structure, Thermodynamics, and Kinetics Annual Reports in Computational Chemistry. 4: 67-87. DOI: 10.1016/S1574-1400(08)00004-2 |
0.347 |
|
2007 |
Bhattacharya N, Yi M, Zhou HX, Logan TM. Backbone dynamics in an intramolecular prolylpeptide-SH3 complex from the diphtheria toxin repressor, DtxR. Journal of Molecular Biology. 374: 977-92. PMID 17976643 DOI: 10.1016/J.Jmb.2007.09.063 |
0.34 |
|
2007 |
Qin S, Zhou H. A holistic approach to protein docking. Proteins. 69: 743-749. PMID 17803232 DOI: 10.1002/Prot.21752 |
0.391 |
|
2007 |
Zhou H, Qin S. Interaction-site prediction for protein complexes Bioinformatics. 23: 2203-2209. PMID 17586545 DOI: 10.1093/Bioinformatics/Btm323 |
0.382 |
|
2007 |
Tjong H, Qin S, Zhou H. PI2PE: protein interface/interior prediction engine Nucleic Acids Research. 35: 357-362. PMID 17526530 DOI: 10.1093/Nar/Gkm231 |
0.388 |
|
2007 |
Qin S, Zhou H. Do electrostatic interactions destabilize protein–nucleic acid binding? Biopolymers. 86: 112-118. PMID 17326079 DOI: 10.1002/Bip.20708 |
0.401 |
|
2007 |
Tjong H, Zhou H. GBr(6): a parameterization-free, accurate, analytical generalized born method. Journal of Physical Chemistry B. 111: 3055-3061. PMID 17309289 DOI: 10.1021/Jp066284C |
0.344 |
|
2007 |
Alsallaq R, Zhou H. Prediction of protein-protein association rates from a transition-state theory. Structure. 15: 215-224. PMID 17292839 DOI: 10.1016/J.Str.2007.01.005 |
0.374 |
|
2007 |
Tjong H, Zhou H. DISPLAR: an accurate method for predicting DNA-binding sites on protein surfaces Nucleic Acids Research. 35: 1465-1477. PMID 17284455 DOI: 10.1093/Nar/Gkm008 |
0.343 |
|
2007 |
Gilson MK, Zhou HX. Calculation of protein-ligand binding affinities. Annual Review of Biophysics and Biomolecular Structure. 36: 21-42. PMID 17201676 DOI: 10.1146/Annurev.Biophys.36.040306.132550 |
0.392 |
|
2007 |
Alsallaq R, Zhou H. Energy Landscape and Transition State of Protein-Protein Association Biophysical Journal. 92: 1486-1502. PMID 17142273 DOI: 10.1529/Biophysj.106.096024 |
0.4 |
|
2006 |
Zhou H. Quantitative relation between intermolecular and intramolecular binding of pro-rich peptides to SH3 domains. Biophysical Journal. 91: 3170-3181. PMID 16891373 DOI: 10.1529/Biophysj.106.090258 |
0.35 |
|
2006 |
Dong F, Zhou HX. Electrostatic contribution to the binding stability of protein-protein complexes Proteins: Structure, Function and Genetics. 65: 87-102. PMID 16856180 DOI: 10.1002/Prot.21070 |
0.41 |
|
2006 |
Huang X, Zhou HX. Similarity and difference in the unfolding of thermophilic and mesophilic cold shock proteins studied by molecular dynamics simulations. Biophysical Journal. 91: 2451-63. PMID 16844745 DOI: 10.1529/Biophysj.106.082891 |
0.349 |
|
2006 |
Hu J, Fu R, Nishimura K, Zhang L, Zhou HX, Busath DD, Vijayvergiya V, Cross TA. Histidines, heart of the hydrogen ion channel from influenza A virus: Toward an understanding of conductance and proton selectivity Proceedings of the National Academy of Sciences of the United States of America. 103: 6865-6870. PMID 16632600 DOI: 10.1073/Pnas.0601944103 |
0.332 |
|
2005 |
Zhou H. How do biomolecular systems speed up and regulate rates Physical Biology. 2. PMID 16224118 DOI: 10.1088/1478-3975/2/3/R01 |
0.421 |
|
2005 |
Chen H, Zhou HX. Prediction of interface residues in protein-protein complexes by a consensus neural network method: test against NMR data. Proteins. 61: 21-35. PMID 16080151 DOI: 10.1002/Prot.20514 |
0.367 |
|
2005 |
Zhou H. Interactions of macromolecules with salt ions: an electrostatic theory for the Hofmeister effect. Proteins. 61: 69-78. PMID 16044460 DOI: 10.1002/Prot.20500 |
0.329 |
|
2005 |
Spencer DS, Xu K, Logan TM, Zhou H. Effects of pH, salt, and macromolecular crowding on the stability of FK506-binding protein: an integrated experimental and theoretical study. Journal of Molecular Biology. 351: 219-232. PMID 15992823 DOI: 10.1016/J.Jmb.2005.05.029 |
0.379 |
|
2005 |
Chen H, Zhou HX. Prediction of solvent accessibility and sites of deleterious mutations from protein sequence. Nucleic Acids Research. 33: 3193-9. PMID 15937195 DOI: 10.1093/Nar/Gki633 |
0.327 |
|
2005 |
Huang X, Dong F, Zhou HX. Electrostatic recognition and induced fit in the kappa-PVIIA toxin binding to Shaker potassium channel. Journal of the American Chemical Society. 127: 6836-49. PMID 15869307 DOI: 10.1021/Ja042641Q |
0.39 |
|
2005 |
Zhou H. A Model for the Mediation of Processivity of DNA-Targeting Proteins by Nonspecific Binding: Dependence on DNA Length and Presence of Obstacles Biophysical Journal. 88: 1608-1615. PMID 15596498 DOI: 10.1529/Biophysj.104.052688 |
0.308 |
|
2004 |
Zhou H, Szabo A. Enhancement of association rates by nonspecific binding to DNA and cell membranes. Physical Review Letters. 93: 178101. PMID 15525128 DOI: 10.1103/Physrevlett.93.178101 |
0.321 |
|
2004 |
Zhou H. Protein folding and binding in confined spaces and in crowded solutions Journal of Molecular Recognition. 17: 368-375. PMID 15362094 DOI: 10.1002/Jmr.711 |
0.427 |
|
2004 |
Zhou H. Improving the understanding of human genetic diseases through predictions of protein structures and protein-protein interaction sites. Current Medicinal Chemistry. 11: 539-549. PMID 15032602 DOI: 10.2174/0929867043455800 |
0.371 |
|
2004 |
Zhou H. Polymer Models of Protein Stability, Folding, and Interactions† Biochemistry. 43: 2141-2154. PMID 14979710 DOI: 10.1021/Bi036269N |
0.42 |
|
2004 |
Zhou H. Loops, linkages, rings, catenanes, cages, and crowders: entropy-based strategies for stabilizing proteins. Accounts of Chemical Research. 37: 123-130. PMID 14967059 DOI: 10.1021/Ar0302282 |
0.367 |
|
2003 |
Zhou H. Effect of backbone cyclization on protein folding stability: chain entropies of both the unfolded and the folded states are restricted. Journal of Molecular Biology. 332: 257-264. PMID 12946362 DOI: 10.1016/S0022-2836(03)00886-6 |
0.377 |
|
2003 |
Zhou H. Effect of catenation on protein folding stability. Journal of the American Chemical Society. 125: 9280-9281. PMID 12889942 DOI: 10.1021/Ja0355978 |
0.348 |
|
2003 |
Dong F, Vijayakumar M, Zhou HX. Comparison of calculation and experiment implicates significant electrostatic contributions to the binding stability of barnase and barstar Biophysical Journal. 85: 49-60. PMID 12829463 DOI: 10.1016/S0006-3495(03)74453-1 |
0.345 |
|
2003 |
Zhou HX, Dong F. Electrostatic contributions to the stability of a thermophilic cold shock protein Biophysical Journal. 84: 2216-2222. PMID 12668430 DOI: 10.1016/S0006-3495(03)75027-9 |
0.39 |
|
2003 |
Zhou H. Direct test of the Gaussian-chain model for treating residual charge-charge interactions in the unfolded state of proteins. Journal of the American Chemical Society. 125: 2060-2061. PMID 12590529 DOI: 10.1021/Ja0298491 |
0.345 |
|
2003 |
Zhou H. Theory for the rate of contact formation in a polymer chain with local conformational transitions Journal of Chemical Physics. 118: 2010-2015. DOI: 10.1063/1.1531588 |
0.337 |
|
2002 |
Zhou H. Toward the physical basis of thermophilic proteins : linking of enriched polar interactions and reduced heat capacity of unfolding Biophysical Journal. 83: 3126-3133. PMID 12496083 DOI: 10.1016/S0006-3495(02)75316-2 |
0.332 |
|
2002 |
Zhou H. Residual charge interactions in unfolded staphylococcal nuclease can be explained by the Gaussian-chain model. Biophysical Journal. 83: 2981-2986. PMID 12496071 DOI: 10.1016/S0006-3495(02)75304-6 |
0.342 |
|
2002 |
Dong F, Zhou HX. Electrostatic contributions to T4 lysozyme stability: Solvent-exposed charges versus semi-buried salt bridges Biophysical Journal. 83: 1341-1347. PMID 12202359 DOI: 10.1016/S0006-3495(02)73904-0 |
0.333 |
|
2002 |
Zhou H. Residual electrostatic effects in the unfolded state of the N-terminal domain of L9 can be attributed to nonspecific nonlocal charge-charge interactions. Biochemistry. 41: 6533-6538. PMID 12009918 DOI: 10.1021/Bi025580M |
0.323 |
|
2002 |
Zhou H. A Gaussian-chain model for treating residual charge-charge interactions in the unfolded state of proteins. Proceedings of the National Academy of Sciences of the United States of America. 99: 3569-3574. PMID 11891295 DOI: 10.1073/Pnas.052030599 |
0.413 |
|
2002 |
Zhou H. Model for the Binding of the Inactivation N-Terminal to the Ion Pore of Shaker Potassium Channel: Both Electrostatic Attraction and Covalent Linkage Are Required for Rapid Inactivation Journal of Physical Chemistry B. 106: 2393-2397. DOI: 10.1021/Jp013859R |
0.341 |
|
2002 |
Zhou H. Dimensions of denatured protein chains from hydrodynamic data Journal of Physical Chemistry B. 106: 5769-5775. DOI: 10.1021/Jp013403+ |
0.338 |
|
2001 |
Zhou H, Wang G. Predicted structures of two proteins involved in human diseases. Cell Biochemistry and Biophysics. 35: 35-47. PMID 11898854 DOI: 10.1385/Cbb:35:1:35 |
0.347 |
|
2001 |
Zhou H. A unified picture of protein hydration: prediction of hydrodynamic properties from known structures. Biophysical Chemistry. 93: 171-179. PMID 11804724 DOI: 10.1016/S0301-4622(01)00219-8 |
0.386 |
|
2001 |
Zhou H. The Affinity-Enhancing Roles of Flexible Linkers in Two-Domain DNA-Binding Proteins † Biochemistry. 40: 15069-15073. PMID 11735389 DOI: 10.1021/Bi015795G |
0.334 |
|
2001 |
Zhou H. Disparate ionic-strength dependencies of on and off rates in protein-protein association. Biopolymers. 59: 427-433. PMID 11598877 DOI: 10.1002/1097-0282(200111)59:6<427::Aid-Bip1047>3.0.Co;2-7 |
0.361 |
|
2001 |
Zhou HX, Shan Y. Prediction of protein interaction sites from sequence profile and residue neighbor list Proteins: Structure, Function and Genetics. 44: 336-343. PMID 11455607 DOI: 10.1002/Prot.1099 |
0.374 |
|
2001 |
Zhou H. Single-chain versus dimeric protein folding: thermodynamic and kinetic consequences of covalent linkage. Journal of the American Chemical Society. 123: 6730-6731. PMID 11439075 DOI: 10.1021/Ja015990I |
0.359 |
|
2001 |
Zhou H. Loops in Proteins Can Be Modeled as Worm-Like Chains Journal of Physical Chemistry B. 105: 6763-6766. DOI: 10.1021/Jp011355N |
0.377 |
|
2001 |
Vijayakumar M, Zhou HX. Salt bridges stabilize the folded structure of barnase Journal of Physical Chemistry B. 105: 7334-7340. DOI: 10.1021/Jp011214L |
0.345 |
|
2000 |
Shan Y, Zhou HX. Correspondence of potentials of mean force in proteins and in liquids Journal of Chemical Physics. 113: 4794-4798. DOI: 10.1063/1.1288920 |
0.351 |
|
2000 |
Vijayakumar M, Zhou H. Prediction of Residue−Residue Pair Frequencies in Proteins Journal of Physical Chemistry B. 104: 9755-9764. DOI: 10.1021/Jp001757F |
0.377 |
|
1998 |
Zhou HX, Wlodek ST, McCammon JA. Conformation gating as a mechanism for enzyme specificity. Proceedings of the National Academy of Sciences of the United States of America. 95: 9280-3. PMID 9689071 DOI: 10.1073/Pnas.95.16.9280 |
0.356 |
|
1998 |
Vijayakumar M, Wong KY, Schreiber G, Fersht AR, Szabo AP, Zhou H. Electrostatic enhancement of diffusion-controlled protein-protein association: comparison of theory and experiment on barnase and barstar. Journal of Molecular Biology. 278: 1015-1024. PMID 9600858 DOI: 10.1006/Jmbi.1998.1747 |
0.399 |
|
1998 |
Zhou HX, Briggs JM, Tara S, McCammon JA. Correlation between rate of enzyme-substrate diffusional encounter and average Boltzmann factor around active site. Biopolymers. 45: 355-60. PMID 9530014 DOI: 10.1002/(Sici)1097-0282(19980415)45:5<355::Aid-Bip4>3.0.Co;2-K |
0.32 |
|
1998 |
Zhou H. Theory of the diffusion-influenced substrate binding rate to a buried and gated active site Journal of Chemical Physics. 108: 8146-8154. DOI: 10.1063/1.476255 |
0.324 |
|
1997 |
Zhou HX, Vijayakumar M. Modeling of protein conformational fluctuations in pK(a) predictions Journal of Molecular Biology. 267: 1002-1011. PMID 9135126 DOI: 10.1006/Jmbi.1997.0895 |
0.355 |
|
1993 |
Schaad O, Zhou HX, Szabo A, Eaton WA, Henry ER. Simulation of the kinetics of ligand binding to a protein by molecular dynamics: geminate rebinding of nitric oxide to myoglobin. Proceedings of the National Academy of Sciences of the United States of America. 90: 9547-51. PMID 8415739 DOI: 10.1073/Pnas.90.20.9547 |
0.385 |
|
1993 |
Zhou H. Brownian dynamics study of the influences of electrostatic interaction and diffusion on protein-protein association kinetics Biophysical Journal. 64: 1711-1726. PMID 8396447 DOI: 10.1016/S0006-3495(93)81543-1 |
0.385 |
|
1991 |
Zhou H, Szabo A. Comparison between molecular dynamics simulations and the Smoluchowski theory of reactions in a hard‐sphere liquid Journal of Chemical Physics. 95: 5948-5952. DOI: 10.1063/1.461616 |
0.317 |
|
1991 |
Zhou HX, Zwanzig R. A rate process with an entropy barrier The Journal of Chemical Physics. 94: 6147-6152. DOI: 10.1063/1.460427 |
0.307 |
|
Low-probability matches (unlikely to be authored by this person) |
2023 |
Zhang R, Qin H, Prasad R, Fu R, Zhou HX, Cross TA. Dimeric Transmembrane Structure of the SARS-CoV-2 E Protein. Biorxiv : the Preprint Server For Biology. PMID 37214926 DOI: 10.1101/2023.05.07.539752 |
0.299 |
|
2023 |
Zhang R, Qin H, Prasad R, Fu R, Zhou HX, Cross TA. Dimeric Transmembrane Structure of the SARS-CoV-2 E Protein. Communications Biology. 6: 1109. PMID 37914906 DOI: 10.1038/s42003-023-05490-x |
0.299 |
|
1992 |
Zhou H, Bagchi B, Papazyan A, Maroncelli M. Solvation dynamics in a Brownian dipole lattice: A comparison between theory and computer simulation The Journal of Chemical Physics. 97: 9311-9320. DOI: 10.1063/1.463307 |
0.299 |
|
1996 |
Zhou H. Dielectric continuum model for calculating reorganization free energies of electron transfer in proteins Journal of Chemical Physics. 105: 3726-3733. DOI: 10.1063/1.472192 |
0.299 |
|
2019 |
Hicks A, Escobar C, Cross TA, Zhou H. Experimental and Computational Characterization of the Conformational Ensemble and Interaction Motifs of Chiz N-Terminal Intrinsically Disordered Region Biophysical Journal. 116: 202a. DOI: 10.1016/J.Bpj.2018.11.1116 |
0.298 |
|
2007 |
Qin S, Zhou H. meta-PPISP Bioinformatics. 23: 3386-3387. PMID 17895276 DOI: 10.1093/Bioinformatics/Btm434 |
0.298 |
|
1999 |
Berezhkovskii AM, Szabo A, Weiss GH, Zhou H. Reaction dynamics on a thermally fluctuating potential Journal of Chemical Physics. 111: 9952-9957. DOI: 10.1063/1.480348 |
0.297 |
|
2008 |
Yi M, Nymeyer H, Zhou HX. Test of the Gouy-Chapman theory for a charged lipid membrane against explicit-solvent molecular dynamics simulations. Physical Review Letters. 101: 038103. PMID 18764300 DOI: 10.1103/Physrevlett.101.038103 |
0.297 |
|
2010 |
Qin S, Minh DD, McCammon JA, Zhou HX. Method to Predict Crowding Effects by Postprocessing Molecular Dynamics Trajectories: Application to the Flap Dynamics of HIV-1 Protease. The Journal of Physical Chemistry Letters. 1: 107-110. PMID 20228897 DOI: 10.1021/Jz900023W |
0.295 |
|
1997 |
Zhou HX, Wong KY, Vijayakumar M. Design of fast enzymes by optimizing interaction potential in active site Proceedings of the National Academy of Sciences of the United States of America. 94: 12372-12377. PMID 9356456 DOI: 10.1073/Pnas.94.23.12372 |
0.295 |
|
1999 |
Vijayakumar M, Qian H, Zhou H. Hydrogen bonds between short polar side chains and peptide backbone: prevalence in proteins and effects on helix-forming propensities. Proteins. 34: 497-507. PMID 10081962 DOI: 10.1002/(Sici)1097-0134(19990301)34:4<497::Aid-Prot9>3.0.Co;2-G |
0.294 |
|
1996 |
Zhou H, Szabo A. Theory and simulation of stochastically-gated diffusion-influenced reactions The Journal of Physical Chemistry. 100: 2597-2604. DOI: 10.1021/Jp952376I |
0.291 |
|
2016 |
Gan Q, Dai J, Zhou HX, Wollmuth LP. The transmembrane domain mediates tetramerization of α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptors. The Journal of Biological Chemistry. PMID 26839312 DOI: 10.1074/Jbc.M115.686246 |
0.291 |
|
2018 |
Amin JB, Leng X, Gochman A, Zhou HX, Wollmuth LP. A conserved glycine harboring disease-associated mutations permits NMDA receptor slow deactivation and high Ca permeability. Nature Communications. 9: 3748. PMID 30217972 DOI: 10.1038/S41467-018-06145-W |
0.288 |
|
2007 |
Zhou H. Helix formation inside a nanotube: possible influence of backbone-water hydrogen bonding by the confining surface through modulation of water activity. Journal of Chemical Physics. 127: 245101-245101. PMID 18163710 DOI: 10.1063/1.2812282 |
0.287 |
|
2013 |
Cormier AR, Pang X, Zimmerman MI, Zhou HX, Paravastu AK. Molecular structure of RADA16-I designer self-assembling peptide nanofibers. Acs Nano. 7: 7562-72. PMID 23977885 DOI: 10.1021/Nn401562F |
0.287 |
|
2014 |
Dai J, Zhou HX. General rules for the arrangements and gating motions of pore-lining helices in homomeric ion channels. Nature Communications. 5: 4641. PMID 25105557 DOI: 10.1038/Ncomms5641 |
0.286 |
|
1992 |
Luty BA, McCammon JA, Zhou H. Diffusive reaction rates from Brownian dynamics simulations: Replacing the outer cutoff surface by an analytical treatment The Journal of Chemical Physics. 97: 5682-5686. DOI: 10.1063/1.463777 |
0.286 |
|
2007 |
Tjong H, Zhou H. GBr6NL: a generalized Born method for accurately reproducing solvation energy of the nonlinear Poisson-Boltzmann equation. Journal of Chemical Physics. 126: 195102-195102. PMID 17523838 DOI: 10.1063/1.2735322 |
0.285 |
|
2003 |
Zhou H. Quantitative Account of the Enhanced Affinity of Two Linked scFvs Specific for Different Epitopes on the Same Antigen Journal of Molecular Biology. 329: 1-8. PMID 12742013 DOI: 10.1016/S0022-2836(03)00372-3 |
0.285 |
|
2013 |
Pang X, Zhou H. Activation of signaling receptors: do ligands bind to receptor monomer, dimer, or both? Bmc Biophysics. 6: 7-7. PMID 23731691 DOI: 10.1186/2046-1682-6-7 |
0.285 |
|
2018 |
Amin J, Pang X, Gochman A, Bowen ME, Zhou H, Wollmuth LP. Disease-Associated Mutations Reveal a Conserved Glycine that Stabilizes Opposing Channel Conformations in Ionotropic Glutamate Receptors Biophysical Journal. 114: 309a-310a. DOI: 10.1016/J.Bpj.2017.11.1752 |
0.284 |
|
2017 |
Zhou HX, Wollmuth LP. Advancing NMDA Receptor Physiology by Integrating Multiple Approaches. Trends in Neurosciences. PMID 28187950 DOI: 10.1016/J.Tins.2017.01.001 |
0.284 |
|
2008 |
Zhou H. Calculation of free-energy differences and potentials of mean force by a multi-energy gap method. Journal of Chemical Physics. 128: 114104. PMID 18361551 DOI: 10.1063/1.2841942 |
0.284 |
|
2014 |
Das N, Dai J, Hung I, Rajagopalan M, Zhou H, Cross T. Structure of M. tuberculosis CrgA membrane protein in lipid bilayer Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr19867 |
0.282 |
|
2001 |
Shan Y, Wang G, Zhou H. Fold recognition and accurate query‐template alignment by a combination of PSI‐BLAST and threading Proteins. 42: 23-37. PMID 11093258 DOI: 10.1002/1097-0134(20010101)42:1<23::Aid-Prot40>3.0.Co;2-K |
0.282 |
|
1995 |
Zhou H, Szabo A. Microscopic formulation of Marcus’ theory of electron transfer Journal of Chemical Physics. 103: 3481-3494. DOI: 10.1063/1.470232 |
0.28 |
|
1996 |
Zhou H. Effect Of Interaction Potentials In Diffusion-Influenced Reactions With Small Reactive Regions Journal of Chemical Physics. 105: 7235-7237. DOI: 10.1063/1.472530 |
0.279 |
|
1994 |
Douglas JF, Zhou HX, Hubbard JB. Hydrodynamic friction and the capacitance of arbitrarily shaped objects. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 49: 5319-5331. PMID 9961860 DOI: 10.1103/Physreve.49.5319 |
0.279 |
|
2016 |
Klinger A, Guo C, Zhou H, Paravastu A, Kiselar J, Nix AJ, Rosenberry TL. Amyloid-β(1-42)Oligomer Models Developed using Combined Solid State NMR and Sequence Specific Hydroxyl Radical Footprinting Data Biophysical Journal. 110: 555a. DOI: 10.1016/J.Bpj.2015.11.2966 |
0.278 |
|
2014 |
Berezhkovskii AM, Szabo A, Greives N, Zhou H. Multidimensional reaction rate theory with anisotropic diffusion Journal of Chemical Physics. 141: 204106-204106. PMID 25429932 DOI: 10.1063/1.4902243 |
0.278 |
|
2008 |
Tjong H, Zhou H. On the Dielectric Boundary in Poisson-Boltzmann Calculations. Journal of Chemical Theory and Computation. 4: 507-514. PMID 23304097 DOI: 10.1021/Ct700319X |
0.278 |
|
1992 |
Zhou H, Bagchi B. Dielectric and orientational relaxation in a Brownian dipolar lattice The Journal of Chemical Physics. 97: 3610-3620. DOI: 10.1063/1.462944 |
0.278 |
|
1998 |
Zhou H. Comparison of three Brownian-dynamics algorithms for calculating rate constants of diffusion-influenced reactions Journal of Chemical Physics. 108: 8139-8145. DOI: 10.1063/1.476254 |
0.278 |
|
2012 |
Qin S, Pang X, Zhou HX. Automated prediction of protein association rate constants. Structure (London, England : 1993). 19: 1744-51. PMID 22153497 DOI: 10.1016/j.str.2011.10.015 |
0.276 |
|
2013 |
Leonard SR, Cormier AR, Pang X, Zimmerman MI, Zhou HX, Paravastu AK. Solid-state NMR evidence for β-hairpin structure within MAX8 designer peptide nanofibers. Biophysical Journal. 105: 222-30. PMID 23823242 DOI: 10.1016/J.Bpj.2013.05.047 |
0.276 |
|
2010 |
Bazavov A, Berg BA, Zhou HX. Application of Biased Metropolis Algorithms: From protons to proteins. Mathematics and Computers in Simulation. 80: 1056-1067. PMID 26612967 DOI: 10.1016/J.Matcom.2009.05.005 |
0.275 |
|
2020 |
Prasad R, Zhou H. Membrane Association and Functional Mechanism of Synaptotagmin-1 in Triggering Vesicle Fusion. Biophysical Journal. 119: 1255-1265. PMID 32882186 DOI: 10.1016/J.Bpj.2020.08.008 |
0.275 |
|
2014 |
Zhou H. Theoretical frameworks for multiscale modeling and simulation. Current Opinion in Structural Biology. 25: 67-76. PMID 24492203 DOI: 10.1016/J.Sbi.2014.01.004 |
0.275 |
|
1990 |
Zhou H. On the calculation of diffusive reaction rates using Brownian dynamics simulations Journal of Chemical Physics. 92: 3092-3095. DOI: 10.1063/1.457907 |
0.275 |
|
2010 |
Yi M, Zhou H. Oligomerization of Amphipathic Peptides in a Membrane Studied by Coarse-Grained Molecular Dynamics Simulations Biophysical Journal. 98: 4-8. DOI: 10.1016/J.Bpj.2009.12.2489 |
0.274 |
|
1995 |
Ernst JA, Clubb RT, Zhou HX, Gronenborn AM, Clore GM. Demonstration of positionally disordered water within a protein hydrophobic cavity by NMR. Science (New York, N.Y.). 267: 1813-7. PMID 7892604 DOI: 10.1126/Science.7892604 |
0.272 |
|
2017 |
Amin JB, Salussolia CL, Chan K, Regan MC, Dai J, Zhou HX, Furukawa H, Bowen ME, Wollmuth LP. Divergent roles of a peripheral transmembrane segment in AMPA and NMDA receptors. The Journal of General Physiology. PMID 28507080 DOI: 10.1085/Jgp.201711762 |
0.269 |
|
2020 |
Zhou HX. Determination of Condensate Material Properties from Droplet Deformation. The Journal of Physical Chemistry. B. PMID 32857503 DOI: 10.1021/Acs.Jpcb.0C06230 |
0.267 |
|
1993 |
Zhou H. Boundary element solution of macromolecular electrostatics: interaction energy between two proteins Biophysical Journal. 65: 955-963. PMID 8218918 DOI: 10.1016/S0006-3495(93)81094-4 |
0.266 |
|
1994 |
Zhou H. Macromolecular electrostatic energy within the nonlinear Poisson–Boltzmann equation Journal of Chemical Physics. 100: 3152-3162. DOI: 10.1063/1.466406 |
0.266 |
|
2011 |
Barreda JL, Zhou H. A solvable model for the diffusion and reaction of neurotransmitters in a synaptic junction Bmc Biophysics. 4: 5-5. PMID 21596000 DOI: 10.1186/2046-1682-4-5 |
0.265 |
|
2010 |
Zhou H. Speeding up in a crowd Physics. 3. DOI: 10.1103/Physics.3.77 |
0.265 |
|
1990 |
Zhou H, Szabo A. Mean field theory of transient fluorescence quenching in the frequency domain Journal of Chemical Physics. 92: 3874-3880. DOI: 10.1063/1.457792 |
0.265 |
|
2010 |
Qin S, Zhou H. Selection of near-native poses in CAPRI rounds 13-19. Proteins. 78: 3166-3173. PMID 20589642 DOI: 10.1002/Prot.22772 |
0.263 |
|
2012 |
Zhou H. Intrinsic disorder: signaling via highly specific but short-lived association Trends in Biochemical Sciences. 37: 43-48. PMID 22154231 DOI: 10.1016/J.Tibs.2011.11.002 |
0.263 |
|
1989 |
Zhou H. The exponential nature of barrier crossings studied by langevin dynamics Chemical Physics Letters. 164: 285-290. DOI: 10.1016/0009-2614(89)85030-4 |
0.261 |
|
2023 |
Dey S, Zhou HX. N-WASP is competent for downstream signaling before full release from autoinhibition. The Journal of Chemical Physics. 158: 091105. PMID 36889962 DOI: 10.1063/5.0137908 |
0.261 |
|
2015 |
Das N, Dai J, Hung I, Rajagopalan MR, Rajagopalan MR, Zhou HX, Cross TA. Structure of CrgA, a cell division structural and regulatory protein from Mycobacterium tuberculosis, in lipid bilayers. Proceedings of the National Academy of Sciences of the United States of America. 112: E119-26. PMID 25548160 DOI: 10.1073/Pnas.1415908112 |
0.26 |
|
2012 |
Szabo A, Zhou H. Role of diffusion in the kinetics of reversible enzyme-catalyzed reactions. Bulletin of the Korean Chemical Society. 33: 925-928. PMID 23418399 DOI: 10.5012/Bkcs.2012.33.3.925 |
0.258 |
|
2011 |
Loong C, Zhou H, Chase PB. Flexibility Change in Human Cardiac α-Tropomyosin E180G Mutant: Possible Link to Cardiac Hypertrophy Biophysical Journal. 100: 586a. DOI: 10.1016/J.Bpj.2010.12.3384 |
0.25 |
|
2012 |
Loong CK, Zhou HX, Chase PB. Familial hypertrophic cardiomyopathy related E180G mutation increases flexibility of human cardiac α-tropomyosin. Febs Letters. 586: 3503-7. PMID 22958892 DOI: 10.1016/J.Febslet.2012.08.005 |
0.247 |
|
2002 |
Boschitsch AH, Fenley MO, Zhou H. Fast Boundary Element Method for the Linear Poisson−Boltzmann Equation The Journal of Physical Chemistry B. 106: 2741-2754. DOI: 10.1021/Jp013607Q |
0.247 |
|
2016 |
Guo J, Zhou H. Author response: Allosteric activation of SENP1 by SUMO1 β-grasp domain involves a dock-and-coalesce mechanism Elife. DOI: 10.7554/Elife.18249.015 |
0.246 |
|
2018 |
Dai J, Zhou HX. Publisher Correction: General rules for the arrangements and gating motions of pore-lining helices in homomeric ion channels. Nature Communications. 9: 16210. PMID 29633764 DOI: 10.1038/Ncomms16210 |
0.246 |
|
1995 |
Zhou H. Calculation of translational friction and intrinsic viscosity. I. General formulation for arbitrarily shaped particles Biophysical Journal. 69: 2286-2297. PMID 8599636 DOI: 10.1016/S0006-3495(95)80099-8 |
0.245 |
|
2005 |
Berg BA, Zhou HX. Rugged Metropolis sampling with simultaneous updating of two dynamical variables. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 72: 016712. PMID 16090139 DOI: 10.1103/Physreve.72.016712 |
0.244 |
|
2012 |
Loong C, Zhou H, Chase PB. Persistence Length of Human Cardiac α-Tropomyosin Implies Near-Neighbor Cooperative Activation of Cardiac Thin Filaments Biophysical Journal. 102: 230a. DOI: 10.1016/J.Bpj.2011.11.1264 |
0.242 |
|
2020 |
Gao Y, Guo C, Watzlawik JO, Randolph PS, Lee EJ, Huang D, Stagg SM, Zhou HX, Rosenberry TL, Paravastu AK. Out-of-register parallel β-sheets and antiparallel β-sheets coexist in 150 kDa oligomers formed by Amyloid-β(1-42). Journal of Molecular Biology. PMID 32470558 DOI: 10.1016/J.Jmb.2020.05.018 |
0.242 |
|
2014 |
Zhou H, Bilsel O. SAXS/SANS probe of intermolecular interactions in concentrated protein solutions. Biophysical Journal. 106: 771-773. PMID 24559977 DOI: 10.1016/J.Bpj.2014.01.019 |
0.24 |
|
2020 |
Ghosh A, Zhang X, Zhou HX. A Tug of War Between Condensate Phases in a Minimal Macromolecular System. Journal of the American Chemical Society. PMID 32326697 DOI: 10.1021/Jacs.0C01881 |
0.239 |
|
2022 |
Gupta A, Dey S, Hicks A, Zhou HX. Artificial intelligence guided conformational mining of intrinsically disordered proteins. Communications Biology. 5: 610. PMID 35725761 DOI: 10.1038/s42003-022-03562-y |
0.234 |
|
2021 |
Hicks A, MacAinsh M, Zhou HX. Removing Thermostat Distortions of Protein Dynamics in Constant-Temperature Molecular Dynamics Simulations. Journal of Chemical Theory and Computation. PMID 34464112 DOI: 10.1021/acs.jctc.1c00448 |
0.234 |
|
2012 |
Loong CK, Zhou HX, Chase PB. Persistence length of human cardiac α-tropomyosin measured by single molecule direct probe microscopy. Plos One. 7: e39676. PMID 22737252 DOI: 10.1371/Journal.Pone.0039676 |
0.233 |
|
2023 |
Qin S, Zhou HX. Predicting the Sequence-Dependent Backbone Dynamics of Intrinsically Disordered Proteins. Biorxiv : the Preprint Server For Biology. PMID 36778236 DOI: 10.1101/2023.02.02.526886 |
0.23 |
|
2003 |
Zhou H. How often does the myristoylated N-terminal latch of c-Abl come off? Febs Letters. 552: 160-162. PMID 14527680 DOI: 10.1016/S0014-5793(03)00911-6 |
0.229 |
|
2016 |
Lensink MF, Velankar S, Kryshtafovych A, Huang SY, Schneidman-Duhovny D, Sali A, Segura J, Fernandez-Fuentes N, Viswanath S, Elber R, Grudinin S, Popov P, Neveu E, Lee H, Baek M, ... ... Zhou HX, et al. Prediction of homo- and hetero-protein complexes by protein docking and template-based modeling: a CASP-CAPRI experiment. Proteins. PMID 27122118 DOI: 10.1002/Prot.25007 |
0.227 |
|
1994 |
Zhou H, Szabo A, Douglas JF, Hubbard JB. A Brownian dynamics algorithm for calculating the hydrodynamic friction and the electrostatic capacitance of an arbitrarily shaped object Journal of Chemical Physics. 100: 3821-3826. DOI: 10.1063/1.466371 |
0.226 |
|
2011 |
Fleishman SJ, Whitehead TA, Strauch EM, Corn JE, Qin S, Zhou HX, Mitchell JC, Demerdash ON, Takeda-Shitaka M, Terashi G, Moal IH, Li X, Bates PA, Zacharias M, Park H, et al. Community-wide assessment of protein-interface modeling suggests improvements to design methodology. Journal of Molecular Biology. 414: 289-302. PMID 22001016 DOI: 10.1016/J.Jmb.2011.09.031 |
0.225 |
|
2012 |
Du J, Cross TA, Zhou HX. Recent progress in structure-based anti-influenza drug design Drug Discovery Today. 17: 1111-1120. PMID 22704956 DOI: 10.1016/J.Drudis.2012.06.002 |
0.222 |
|
1994 |
Zhou H. Effects of Mutations and Complex Formation on the Reduction Potentials of Cytochrome c and Cytochrome c Peroxidase Journal of the American Chemical Society. 116: 10362-10375. DOI: 10.1021/Ja00102A002 |
0.221 |
|
2022 |
Dey S, MacAinsh M, Zhou HX. Sequence-Dependent Backbone Dynamics of Intrinsically Disordered Proteins. Journal of Chemical Theory and Computation. PMID 36084347 DOI: 10.1021/acs.jctc.2c00328 |
0.22 |
|
2020 |
Hicks A, Escobar CA, Cross TA, Zhou H. Membrane Association of the Intrinsically Disordered N-Terminal Region of ChiZ Biophysical Journal. 118. DOI: 10.1016/J.Bpj.2019.11.2938 |
0.22 |
|
2009 |
Dong GC, Chuang PH, Chang KC, Jan PS, Hwang PI, Wu HB, Yi M, Zhou HX, Chen HM. Blocking effect of an immuno-suppressive agent, cynarin, on CD28 of T-cell receptor. Pharmaceutical Research. 26: 375-81. PMID 18989760 DOI: 10.1007/S11095-008-9754-5 |
0.218 |
|
2022 |
Agard DA, Bowman GR, DeGrado W, Dokholyan NV, Zhou HX. Solution of the protein structure prediction problem at last: crucial innovations and next frontiers. Faculty Reviews. 11: 38. PMID 36644294 DOI: 10.12703/r-01-0000020 |
0.215 |
|
2008 |
Zhou H. The debut of PMC Biophysics. Pmc Biophysics. 1: 1-2. PMID 19351423 DOI: 10.1186/1757-5036-1-1 |
0.213 |
|
2020 |
Mazarakos KP, Ghosh A, Zhang X, Nguemaha V, Zhou H. Affinity between Macromolecular Regulators Leads to Precise Control of Liquid-Liquid Phase Separation Biophysical Journal. 118. DOI: 10.1016/J.Bpj.2019.11.1214 |
0.208 |
|
2011 |
Zhou HX. Mechanistic insight into the h(2)o/d (2)o isotope effect in the proton transport of the influenza virus m2 protein. The Journal of Membrane Biology. 244: 93-6. PMID 22041938 DOI: 10.1007/s00232-011-9402-6 |
0.208 |
|
2023 |
Dey S, Zhou HX. Why Does Synergistic Activation of WASP, but Not N-WASP, by Cdc42 and PIP Require Cdc42 Prenylation? Journal of Molecular Biology. 168035. PMID 36863659 DOI: 10.1016/j.jmb.2023.168035 |
0.205 |
|
2016 |
Im W, Liang J, Olson A, Zhou HX, Vajda S, Vakser IA. Challenges in structural approaches to cell modeling. Journal of Molecular Biology. PMID 27255863 DOI: 10.1016/J.Jmb.2016.05.024 |
0.203 |
|
2020 |
Hicks A, Escobar CA, Cross TA, Zhou HX. Sequence-Dependent Correlated Segments in the Intrinsically Disordered Region of ChiZ. Biomolecules. 10. PMID 32585849 DOI: 10.3390/biom10060946 |
0.201 |
|
2023 |
Hu G, Zhou HX. Magnesium ions mediate ligand binding and conformational transition of the SAM/SAH riboswitch. Communications Biology. 6: 791. PMID 37524918 DOI: 10.1038/s42003-023-05175-5 |
0.198 |
|
2014 |
Lensink MF, Moal IH, Bates PA, Kastritis PL, Melquiond AS, Karaca E, Schmitz C, van Dijk M, Bonvin AM, Eisenstein M, Jiménez-García B, Grosdidier S, Solernou A, Pérez-Cano L, Pallara C, ... ... Zhou HX, et al. Blind prediction of interfacial water positions in CAPRI. Proteins. 82: 620-32. PMID 24155158 DOI: 10.1002/Prot.24439 |
0.198 |
|
1996 |
Zhou H, Chen Y. Chemically Driven Motility of Brownian Particles. Physical Review Letters. 77: 194-197. PMID 10061805 DOI: 10.1103/Physrevlett.77.194 |
0.197 |
|
2023 |
Hu G, Zhou HX. Magnesium ions mediate ligand binding and conformational transition of the SAM/SAH riboswitch. Biorxiv : the Preprint Server For Biology. PMID 36945415 DOI: 10.1101/2023.03.12.532287 |
0.196 |
|
2021 |
Hicks A, Escobar CA, Cross TA, Zhou HX. Fuzzy Association of an Intrinsically Disordered Protein with Acidic Membranes. Jacs Au. 1: 66-78. PMID 33554215 DOI: 10.1021/jacsau.0c00039 |
0.195 |
|
2023 |
Kota D, Prasad R, Zhou HX. ATP Mediates Phase Separation of Disordered Basic Proteins by Bridging Intermolecular Interaction Networks. Biorxiv : the Preprint Server For Biology. PMID 37645809 DOI: 10.1101/2023.08.20.554035 |
0.193 |
|
2021 |
Hu G, Zhou HX. Binding free energy decomposition and multiple unbinding paths of buried ligands in a PreQ1 riboswitch. Plos Computational Biology. 17: e1009603. PMID 34767553 DOI: 10.1371/journal.pcbi.1009603 |
0.192 |
|
2024 |
Kota D, Prasad R, Zhou HX. Adenosine Triphosphate Mediates Phase Separation of Disordered Basic Proteins by Bridging Intermolecular Interaction Networks. Journal of the American Chemical Society. 146: 1326-1336. PMID 38174879 DOI: 10.1021/jacs.3c09134 |
0.192 |
|
2020 |
Gupta A, Zhou HX. Profiling SARS-CoV-2 Main Protease (M) Binding to Repurposed Drugs Using Molecular Dynamics Simulations in Classical and Neural Network-Trained Force Fields. Acs Combinatorial Science. PMID 33119257 DOI: 10.1021/acscombsci.0c00140 |
0.191 |
|
2023 |
MacAinsh M, Zhou HX. Partial mimicry of the microtubule binding of tau by its membrane binding. Protein Science : a Publication of the Protein Society. 32: e4581. PMID 36710643 DOI: 10.1002/pro.4581 |
0.188 |
|
2023 |
Qin S, Zhou HX. Atomistic Modeling of Liquid-Liquid Phase Equilibrium Explains Dependence of Critical Temperature on γ-Crystallin Sequence. Biorxiv : the Preprint Server For Biology. PMID 37162827 DOI: 10.1101/2023.04.25.538329 |
0.184 |
|
2024 |
Kim J, Qin S, Zhou HX, Rosen MK. Surface Charge Can Modulate Phase Separation of Multidomain Proteins. Journal of the American Chemical Society. PMID 38262618 DOI: 10.1021/jacs.3c12789 |
0.18 |
|
2008 |
Zhou HX, Rivas G, Minton AP. Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences. Annual Review of Biophysics. 37: 375-97. PMID 18573087 DOI: 10.1146/annurev.biophys.37.032807.125817 |
0.178 |
|
2012 |
Pang X, Zhou HX. Poisson-Boltzmann Calculations: van der Waals or Molecular Surface? Communications in Computational Physics. 13: 1-12. PMID 23293674 DOI: 10.4208/cicp.270711.140911s |
0.173 |
|
2020 |
Pang X, Zhou HX. Distinct mechanisms of a phosphotyrosyl peptide binding to two SH2 domains. Journal of Theoretical & Computational Chemistry. 13: 1440003. PMID 25400311 DOI: 10.1142/s0219633614400033 |
0.166 |
|
2023 |
Qin S, Zhou HX. Atomistic modeling of liquid-liquid phase equilibrium explains dependence of critical temperature on γ-crystallin sequence. Communications Biology. 6: 886. PMID 37644195 DOI: 10.1038/s42003-023-05270-7 |
0.164 |
|
2023 |
Smrt ST, Escobar CA, Dey S, Cross TA, Zhou HX. An Arg/Ala-rich helix in the N-terminal region of M. tuberculosis FtsQ is a potential membrane anchor of the Z-ring. Communications Biology. 6: 311. PMID 36959324 DOI: 10.1038/s42003-023-04686-5 |
0.162 |
|
2022 |
Mazarakos K, Prasad R, Zhou HX. SpiDec: Computing binodals and interfacial tension of biomolecular condensates from simulations of spinodal decomposition. Frontiers in Molecular Biosciences. 9: 1021939. PMID 36353733 DOI: 10.3389/fmolb.2022.1021939 |
0.161 |
|
2021 |
Mazarakos K, Zhou HX. Macromolecular regulators have matching effects on the phase equilibrium and interfacial tension of biomolecular condensates. Protein Science : a Publication of the Protein Society. 30: 1360-1370. PMID 33864415 DOI: 10.1002/pro.4084 |
0.161 |
|
2023 |
Amin JB, He M, Prasad R, Leng X, Zhou HX, Wollmuth LP. Two gates mediate NMDA receptor activity and are under subunit-specific regulation. Nature Communications. 14: 1623. PMID 36959168 DOI: 10.1038/s41467-023-37260-y |
0.161 |
|
2023 |
Muhammedkutty FNK, Prasad R, Gao Y, Sudarshan TR, Robang AS, Watzlawik JO, Rosenberry TL, Paravastu AK, Zhou HX. A common pathway for detergent-assisted oligomerization of Aβ42. Communications Biology. 6: 1184. PMID 37989804 DOI: 10.1038/s42003-023-05556-w |
0.159 |
|
2022 |
Qin S, Hicks A, Dey S, Prasad R, Zhou HX. ReSMAP: Web Server for Predicting Residue-Specific Membrane-Association Propensities of Intrinsically Disordered Proteins. Membranes. 12. PMID 36005688 DOI: 10.3390/membranes12080773 |
0.153 |
|
2021 |
Zhou HX. Viscoelasticity of biomolecular condensates conforms to the Jeffreys model. The Journal of Chemical Physics. 154: 041103. PMID 33514117 DOI: 10.1063/5.0038916 |
0.151 |
|
2022 |
Dey S, Zhou HX. Membrane Tethering of SepF, a Membrane Anchor for the Mycobacterium tuberculosis Z-ring. Journal of Molecular Biology. 167817. PMID 36087777 DOI: 10.1016/j.jmb.2022.167817 |
0.149 |
|
2022 |
Mazarakos K, Qin S, Zhou HX. Calculating Binodals and Interfacial Tension of Phase-Separated Condensates from Molecular Simulations with Finite-Size Corrections. Methods in Molecular Biology (Clifton, N.J.). 2563: 1-35. PMID 36227466 DOI: 10.1007/978-1-0716-2663-4_1 |
0.14 |
|
2021 |
Zhou HX. Shape recovery of deformed biomolecular droplets: Dependence on condensate viscoelasticity. The Journal of Chemical Physics. 155: 145102. PMID 34654286 DOI: 10.1063/5.0064247 |
0.127 |
|
2021 |
Yang Y, Dong H, Zhou HX. Effects of Cholesterol on the Partitioning of a Drug Molecule in Lipid Bilayers. The Journal of Physical Chemistry. B. PMID 33984232 DOI: 10.1021/acs.jpcb.1c02436 |
0.122 |
|
2024 |
Qin S, Zhou HX. Calculating Structure Factors of Protein Solutions by Atomistic Modeling of Protein-Protein Interactions. Biorxiv : the Preprint Server For Biology. PMID 38585905 DOI: 10.1101/2024.03.27.587040 |
0.12 |
|
2021 |
Ghosh A, Kota D, Zhou HX. Shear relaxation governs fusion dynamics of biomolecular condensates. Nature Communications. 12: 5995. PMID 34645832 DOI: 10.1038/s41467-021-26274-z |
0.116 |
|
2022 |
Kota D, Zhou HX. Macromolecular Regulation of the Material Properties of Biomolecular Condensates. The Journal of Physical Chemistry Letters. 5285-5290. PMID 35674796 DOI: 10.1021/acs.jpclett.2c00824 |
0.11 |
|
2022 |
Mazarakos K, Zhou HX. Multiphase organization is a second phase transition within multi-component biomolecular condensates. The Journal of Chemical Physics. 156: 191104. PMID 35597639 DOI: 10.1063/5.0088004 |
0.103 |
|
2021 |
Ahn SH, Qin S, Zhang JZ, McCammon JA, Zhang J, Zhou HX. Characterizing protein kinase A (PKA) subunits as macromolecular regulators of PKA RIα liquid-liquid phase separation. The Journal of Chemical Physics. 154: 221101. PMID 34241191 DOI: 10.1063/5.0049810 |
0.097 |
|
2023 |
Ahlawat V, Zhou HX. Multiple modes of DNA compaction by protamine. Biorxiv : the Preprint Server For Biology. PMID 38106194 DOI: 10.1101/2023.12.08.570784 |
0.092 |
|
2023 |
Zhou HX. Power law in a bounded range: Estimating the lower and upper bounds from sample data. The Journal of Chemical Physics. 158. PMID 37184002 DOI: 10.1063/5.0151614 |
0.084 |
|
2022 |
Rosenberry TL, Zhou HX, Stagg SM, Paravastu AK. Oligomer Formation by Amyloid-β42 in a Membrane-Mimicking Environment in Alzheimer's Disease. Molecules (Basel, Switzerland). 27. PMID 36557940 DOI: 10.3390/molecules27248804 |
0.081 |
|
2023 |
Zhou HX. Power Law in a Bounded Range: Estimating the Lower and Upper Bounds from Sample Data. Arxiv. PMID 36994168 |
0.078 |
|
2022 |
Ghosh A, Kota D, Zhou HX. Determining Thermodynamic and Material Properties of Biomolecular Condensates by Confocal Microscopy and Optical Tweezers. Methods in Molecular Biology (Clifton, N.J.). 2563: 237-260. PMID 36227477 DOI: 10.1007/978-1-0716-2663-4_12 |
0.076 |
|
2021 |
Gupta A, Zhou HX. Machine Learning-Enabled Pipeline for Large-Scale Virtual Drug Screening. Journal of Chemical Information and Modeling. PMID 34399578 DOI: 10.1021/acs.jcim.1c00710 |
0.052 |
|
2021 |
Zhou HX. Speeding by a crowd. Physics. 3. PMID 23269944 |
0.022 |
|
2011 |
Zhou HX. Q&A: What is biophysics? Bmc Biology. 9: 13. PMID 21371342 DOI: 10.1186/1741-7007-9-13 |
0.012 |
|
2011 |
Zhou HX. Q&A: What is biophysics? Bmc Biology. 9: 13. PMID 21371342 DOI: 10.1186/1741-7007-9-13 |
0.012 |
|
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