| Year |
Citation |
Score |
| 2021 |
Rabuck-Gibbons JN, Lyumkis D, Williamson JR. Quantitative mining of compositional heterogeneity in cryo-EM datasets of ribosome assembly intermediates. Structure (London, England : 1993). PMID 34990602 DOI: 10.1016/j.str.2021.12.005 |
0.301 |
|
| 2020 |
Jóźwik IK, Passos DO, Lyumkis D. Structural Biology of HIV Integrase Strand Transfer Inhibitors. Trends in Pharmacological Sciences. 41: 611-626. PMID 32624197 DOI: 10.1016/J.Tips.2020.06.003 |
0.372 |
|
| 2020 |
Passos DO, Li M, Jozwik IK, Zhao XZ, Santos-Martins D, Yang R, Smith SJ, Jeon Y, Forli S, Hughes SH, TRBJ, Craigie R, Lyumkis D. Structural basis for strand-transfer inhibitor binding to HIV intasomes. Science. 367: 810-814. DOI: 10.2210/Pdb6Put/Pdb |
0.372 |
|
| 2019 |
Rabuck-Gibbons JN, Popova AM, Greene EM, Cervantes CF, Lyumkis D, Williamson JR. SrmB Rescues Trapped Ribosome Assembly Intermediates. Journal of Molecular Biology. PMID 31877323 DOI: 10.1016/J.Jmb.2019.12.013 |
0.357 |
|
| 2019 |
Baldwin PR, Lyumkis D. Non-Uniformity of Projection Distributions Attenuates Resolution in Cryo-EM. Progress in Biophysics and Molecular Biology. PMID 31525386 DOI: 10.1016/J.Pbiomolbio.2019.09.002 |
0.317 |
|
| 2019 |
Haack DB, Yan X, Zhang C, Hingey J, Lyumkis D, Baker TS, Toor N. Cryo-EM Structures of a Group II Intron Reverse Splicing into DNA. Cell. 178: 612-623.e12. PMID 31348888 DOI: 10.1016/J.Cell.2019.06.035 |
0.316 |
|
| 2019 |
Koneru PC, Francis AC, Deng N, Rebensburg SV, Hoyte AC, Lindenberger J, Adu-Ampratwum D, Larue RC, Wempe MF, Engelman AN, Lyumkis D, Fuchs JR, Levy RM, Melikyan GB, Kvaratskhelia M. HIV-1 integrase tetramers are the antiviral target of pyridine-based allosteric integrase inhibitors. Elife. 8. PMID 31120420 DOI: 10.7554/Elife.46344 |
0.362 |
|
| 2019 |
Lyumkis D. Challenges and opportunities in cryo-EM single-particle analysis Journal of Biological Chemistry. 294: 5181-5197. PMID 30804214 DOI: 10.1074/Jbc.Rev118.005602 |
0.388 |
|
| 2018 |
Zhang C, Cantara W, Jeon Y, Musier-Forsyth K, Grigorieff N, Lyumkis D. Analysis of discrete local variability and structural covariance in macromolecular assemblies using Cryo-EM and focused classification. Ultramicroscopy. PMID 30528101 DOI: 10.1016/J.Ultramic.2018.11.016 |
0.433 |
|
| 2018 |
Tan YZ, Aiyer S, Mietzsch M, Hull JA, McKenna R, Grieger J, Samulski RJ, Baker TS, Agbandje-McKenna M, Lyumkis D. Sub-2 Å Ewald curvature corrected structure of an AAV2 capsid variant. Nature Communications. 9: 3628. PMID 30194371 DOI: 10.1038/S41467-018-06076-6 |
0.395 |
|
| 2017 |
Ozorowski G, Pallesen J, de Val N, Lyumkis D, Cottrell CA, Torres JL, Copps J, Stanfield RL, Cupo A, Pugach P, Moore JP, Wilson IA, Ward AB. Open and closed structures reveal allostery and pliability in the HIV-1 envelope spike. Nature. PMID 28700571 DOI: 10.1038/Nature23010 |
0.342 |
|
| 2017 |
Tan YZ, Baldwin PR, Davis JH, Williamson JR, Potter CS, Carragher B, Lyumkis D. Addressing preferred specimen orientation in single-particle cryo-EM through tilting. Nature Methods. PMID 28671674 DOI: 10.1038/Nmeth.4347 |
0.373 |
|
| 2017 |
Passos DO, Li M, Yang R, Rebensburg SV, Ghirlando R, Jeon Y, Shkriabai N, Kvaratskhelia M, Craigie R, Lyumkis D. Cryo-EM structures and atomic model of the HIV-1 strand transfer complex intasome. Science (New York, N.Y.). 355: 89-92. PMID 28059769 DOI: 10.1126/Science.Aah5163 |
0.408 |
|
| 2017 |
Chesterman C, Tuske S, Zheng J, Jeon Y, Zhang C, Cantara W, Musier-Forsyth K, Griffin PR, Lyumkis D, Arnold E. Structural investigation of the HIV-1 reverse transcriptase initiation complex by HDX, SAXS, CryoEM and X-ray crystallography Acta Crystallographica Section a Foundations and Advances. 73: a286-a286. DOI: 10.1107/S0108767317097185 |
0.313 |
|
| 2017 |
Lyumkis D, Tan YZ, Baldwin P. Collecting and processing single-particle cryo-EM data with tilts Protocol Exchange. DOI: 10.1038/Protex.2017.055 |
0.324 |
|
| 2016 |
Davis JH, Tan YZ, Carragher B, Potter CS, Lyumkis D, Williamson JR. Modular Assembly of the Bacterial Large Ribosomal Subunit. Cell. 167: 1610-1622.e15. PMID 27912064 DOI: 10.1016/J.Cell.2016.11.020 |
0.356 |
|
| 2016 |
Ballandras-Colas A, Brown M, Cook NJ, Dewdney TG, Demeler B, Cherepanov P, Lyumkis D, Engelman AN. Cryo-EM reveals a novel octameric integrase structure for betaretroviral intasome function. Nature. 530: 358-61. PMID 26887496 DOI: 10.1038/Nature16955 |
0.368 |
|
| 2015 |
Passos DO, Lyumkis D. Single-particle cryoEM analysis at near-atomic resolution from several thousand asymmetric subunits. Journal of Structural Biology. 192: 235-44. PMID 26470814 DOI: 10.1016/J.Jsb.2015.10.002 |
0.387 |
|
| 2015 |
Lee JH, de Val N, Lyumkis D, Ward AB. Model Building and Refinement of a Natively Glycosylated HIV-1 Env Protein by High-Resolution Cryoelectron Microscopy. Structure (London, England : 1993). PMID 26388028 DOI: 10.1016/J.Str.2015.07.020 |
0.396 |
|
| 2014 |
Lyumkis D, Oliveira dos Passos D, Tahara EB, Webb K, Bennett EJ, Vinterbo S, Potter CS, Carragher B, Joazeiro CA. Structural basis for translational surveillance by the large ribosomal subunit-associated protein quality control complex. Proceedings of the National Academy of Sciences of the United States of America. 111: 15981-6. PMID 25349383 DOI: 10.1073/Pnas.1413882111 |
0.356 |
|
| 2014 |
Sashital DG, Greeman CA, Lyumkis D, Potter CS, Carragher B, Williamson JR. A combined quantitative mass spectrometry and electron microscopy analysis of ribosomal 30S subunit assembly in E. coli. Elife. 3. PMID 25313868 DOI: 10.7554/Elife.04491 |
0.339 |
|
| 2013 |
Lyumkis D, Julien JP, de Val N, Cupo A, Potter CS, Klasse PJ, Burton DR, Sanders RW, Moore JP, Carragher B, Wilson IA, Ward AB. Cryo-EM structure of a fully glycosylated soluble cleaved HIV-1 envelope trimer. Science (New York, N.Y.). 342: 1484-90. PMID 24179160 DOI: 10.1126/Science.1245627 |
0.376 |
|
| 2013 |
Julien JP, Cupo A, Sok D, Stanfield RL, Lyumkis D, Deller MC, Klasse PJ, Burton DR, Sanders RW, Moore JP, Ward AB, Wilson IA. Crystal structure of a soluble cleaved HIV-1 envelope trimer. Science (New York, N.Y.). 342: 1477-83. PMID 24179159 DOI: 10.1126/Science.1245625 |
0.335 |
|
| 2013 |
Lyumkis D, Vinterbo S, Potter CS, Carragher B. Optimod--an automated approach for constructing and optimizing initial models for single-particle electron microscopy. Journal of Structural Biology. 184: 417-26. PMID 24161732 DOI: 10.1016/J.Jsb.2013.10.009 |
0.334 |
|
| 2013 |
Lyumkis D, Talley H, Stewart A, Shah S, Park CK, Tama F, Potter CS, Carragher B, Horton NC. Allosteric regulation of DNA cleavage and sequence-specificity through run-on oligomerization. Structure (London, England : 1993). 21: 1848-58. PMID 24055317 DOI: 10.1016/J.Str.2013.08.012 |
0.331 |
|
| 2013 |
Lyumkis D, Brilot AF, Theobald DL, Grigorieff N. Likelihood-based classification of cryo-EM images using FREALIGN. Journal of Structural Biology. 183: 377-88. PMID 23872434 DOI: 10.1016/J.Jsb.2013.07.005 |
0.354 |
|
| 2013 |
Yoshioka C, Lyumkis D, Carragher B, Potter CS. Maskiton: Interactive, web-based classification of single-particle electron microscopy images. Journal of Structural Biology. 182: 155-63. PMID 23428431 DOI: 10.1016/J.Jsb.2013.02.007 |
0.404 |
|
| 2013 |
Lyumkis D, Doamekpor SK, Bengtson MH, Lee JW, Toro TB, Petroski MD, Lima CD, Potter CS, Carragher B, Joazeiro CA. Single-particle EM reveals extensive conformational variability of the Ltn1 E3 ligase. Proceedings of the National Academy of Sciences of the United States of America. 110: 1702-7. PMID 23319619 DOI: 10.1073/Pnas.1210041110 |
0.381 |
|
| 2012 |
Campbell MG, Cheng A, Brilot AF, Moeller A, Lyumkis D, Veesler D, Pan J, Harrison SC, Potter CS, Carragher B, Grigorieff N. Movies of ice-embedded particles enhance resolution in electron cryo-microscopy. Structure (London, England : 1993). 20: 1823-8. PMID 23022349 DOI: 10.1016/J.Str.2012.08.026 |
0.327 |
|
| 2011 |
Milazzo AC, Cheng A, Moeller A, Lyumkis D, Jacovetty E, Polukas J, Ellisman MH, Xuong NH, Carragher B, Potter CS. Initial evaluation of a direct detection device detector for single particle cryo-electron microscopy. Journal of Structural Biology. 176: 404-8. PMID 21933715 DOI: 10.1016/J.Jsb.2011.09.002 |
0.339 |
|
| 2010 |
Lyumkis D, Moeller A, Cheng A, Herold A, Hou E, Irving C, Jacovetty EL, Lau PW, Mulder AM, Pulokas J, Quispe JD, Voss NR, Potter CS, Carragher B. Automation in single-particle electron microscopy connecting the pieces. Methods in Enzymology. 483: 291-338. PMID 20888480 DOI: 10.1016/S0076-6879(10)83015-0 |
0.332 |
|
| 2010 |
Voss NR, Lyumkis D, Cheng A, Lau PW, Mulder A, Lander GC, Brignole EJ, Fellmann D, Irving C, Jacovetty EL, Leung A, Pulokas J, Quispe JD, Winkler H, Yoshioka C, et al. A toolbox for ab initio 3-D reconstructions in single-particle electron microscopy. Journal of Structural Biology. 169: 389-98. PMID 20018246 DOI: 10.1016/J.Jsb.2009.12.005 |
0.362 |
|
| 2010 |
Lyumkis D, Nayak S, Milligan R, Potter C, Carragher B. Automation of Angular Reconstitution for Facilitating the Construction of Initial Models in Single-Particle Electron Microscopy Microscopy and Microanalysis. 16: 756-757. DOI: 10.1017/S1431927610061593 |
0.345 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2020 |
Brugger C, Zhang C, Suhanovsky MM, Kim DD, Sinclair AN, Lyumkis D, Deaconescu AM. Molecular determinants for dsDNA translocation by the transcription-repair coupling and evolvability factor Mfd. Nature Communications. 11: 3740. PMID 32719356 DOI: 10.1038/S41467-020-17457-1 |
0.293 |
|
| 2014 |
Ward A, Lyumkis D, de Val N, Wilson I, Moore J, Sanders R. D-101 CryoEM Studies of HIV-1 Envelope Glycoprotein Jaids Journal of Acquired Immune Deficiency Syndromes. 67: 54. DOI: 10.1097/01.Qai.0000456128.28419.F4 |
0.293 |
|
| 2016 |
Polley S, Passos DO, Huang DB, Mulero MC, Mazumder A, Biswas T, Verma IM, Lyumkis D, Ghosh G. Structural Basis for the Activation of IKK1/α. Cell Reports. 17: 1907-1914. PMID 27851956 DOI: 10.1016/J.Celrep.2016.10.067 |
0.292 |
|
| 2019 |
Polley S, Lyumkis D, Horton NC. Mechanism of Filamentation-Induced Allosteric Activation of the SgrAI Endonuclease. Structure (London, England : 1993). PMID 31447289 DOI: 10.1016/J.Str.2019.08.001 |
0.288 |
|
| 2014 |
Sashital DG, Greeman CA, Lyumkis D, Potter CS, Carragher B, Williamson JR. Author response: A combined quantitative mass spectrometry and electron microscopy analysis of ribosomal 30S subunit assembly in E. coli Elife. DOI: 10.7554/Elife.04491.021 |
0.288 |
|
| 2018 |
Zhang C, Konermann S, Brideau NJ, Lotfy P, Wu X, Novick SJ, Strutzenberg T, Griffin PR, Hsu PD, Lyumkis D. Structural Basis for the RNA-Guided Ribonuclease Activity of CRISPR-Cas13d. Cell. 175: 212-223.e17. PMID 30241607 DOI: 10.1016/J.Cell.2018.09.001 |
0.284 |
|
| 2022 |
Aiyer S, Strutzenberg TS, Bowman ME, Noel JP, Lyumkis D. Single-Particle Cryo-EM Data Collection with Stage Tilt using Leginon. Journal of Visualized Experiments : Jove. PMID 35848829 DOI: 10.3791/64136 |
0.283 |
|
| 2024 |
Jing T, Shan Z, Dinh T, Biswas A, Jang S, Greenwood J, Li M, Zhang Z, Gray G, Shin HJ, Zhou B, Passos D, Aiyer S, Li Z, Craigie R, ... ... Lyumkis D, et al. Oligomeric HIV-1 Integrase Structures Reveal Functional Plasticity for Intasome Assembly and RNA Binding. Biorxiv : the Preprint Server For Biology. PMID 38328132 DOI: 10.1101/2024.01.26.577436 |
0.283 |
|
| 2020 |
Passos DO, Li M, Jóźwik IK, Zhao XZ, Santos-Martins D, Yang R, Smith SJ, Jeon Y, Forli S, Hughes SH, Burke TR, Craigie R, Lyumkis D. Structural basis for strand transfer inhibitor binding to HIV intasomes. Science (New York, N.Y.). PMID 32001521 DOI: 10.1126/science.aay8015 |
0.281 |
|
| 2019 |
Koneru PC, Francis AC, Deng N, Rebensburg SV, Hoyte AC, Lindenberger J, Adu-Ampratwum D, Larue RC, Wempe MF, Engelman AN, Lyumkis D, Fuchs JR, Levy RM, Melikyan GB, Kvaratskhelia M. Author response: HIV-1 integrase tetramers are the antiviral target of pyridine-based allosteric integrase inhibitors Elife. DOI: 10.7554/Elife.46344.029 |
0.28 |
|
| 2022 |
Harrison JJEK, Passos DO, Bruhn JF, Bauman JD, Tuberty L, DeStefano JJ, Ruiz FX, Lyumkis D, Arnold E. Cryo-EM structure of the HIV-1 Pol polyprotein provides insights into virion maturation. Science Advances. 8: eabn9874. PMID 35857464 DOI: 10.1126/sciadv.abn9874 |
0.28 |
|
| 2009 |
Lander GC, Stagg SM, Voss NR, Cheng A, Fellmann D, Pulokas J, Yoshioka C, Irving C, Mulder A, Lau PW, Lyumkis D, Potter CS, Carragher B. Appion: an integrated, database-driven pipeline to facilitate EM image processing. Journal of Structural Biology. 166: 95-102. PMID 19263523 DOI: 10.1016/J.Jsb.2009.01.002 |
0.278 |
|
| 2020 |
Paranagama N, Luthra A, Bayooz S, Jeon Y, Lyumkis D, Swairjo M. Structural and functional characterization of threonylcarbamoyl adenosine biosynthesis in bacteria The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.00562 |
0.278 |
|
| 2020 |
Rabuck-Gibbons JN, Lyumkis D, Williamson JR. Quantitative Analysis of Late-Stage Ribosome Assembly with Cryo-EM Biophysical Journal. 118: 485a-486a. DOI: 10.1016/J.Bpj.2019.11.2688 |
0.26 |
|
| 2020 |
Baldwin PR, Lyumkis D. Tools for visualizing and analyzing Fourier space sampling in Cryo-EM. Progress in Biophysics and Molecular Biology. PMID 32645314 DOI: 10.1016/J.Pbiomolbio.2020.06.003 |
0.259 |
|
| 2020 |
Smith SJ, Zhao XZ, Passos DO, Lyumkis D, Burke TR, Hughes SH. HIV-1 Integrase Inhibitors that are active against Drug-Resistant Integrase Mutants. Antimicrobial Agents and Chemotherapy. PMID 32601157 DOI: 10.1128/Aac.00611-20 |
0.257 |
|
| 2022 |
Ballandras-Colas A, Chivukula V, Gruszka DT, Shan Z, Singh PK, Pye VE, McLean RK, Bedwell GJ, Li W, Nans A, Cook NJ, Fadel HJ, Poeschla EM, Griffiths DJ, Vargas J, ... ... Lyumkis D, et al. Multivalent interactions essential for lentiviral integrase function. Nature Communications. 13: 2416. PMID 35504909 DOI: 10.1038/s41467-022-29928-8 |
0.254 |
|
| 2024 |
Aiyer S, Baldwin PR, Tan SM, Shan Z, Oh J, Mehrani A, Bowman ME, Louie G, Passos DO, Đorđević-Marquardt S, Mietzsch M, Hull JA, Hoshika S, Barad BA, Grotjahn DA, ... ... Lyumkis D, et al. Overcoming resolution attenuation during tilted cryo-EM data collection. Nature Communications. 15: 389. PMID 38195598 DOI: 10.1038/s41467-023-44555-7 |
0.242 |
|
| 2016 |
Polley S, Passos DO, Huang DB, Mulero MC, Mazumder A, Biswas T, Verma IM, Lyumkis D, Ghosh G. Structural Basis for the Activation of IKK1/ alpha. Cell Reports. 17: 1907-1914. DOI: 10.2210/Pdb5Ebz/Pdb |
0.24 |
|
| 2023 |
Dong X, Doerfel LK, Sheng K, Rabuck-Gibbons JN, Popova AM, Lyumkis D, Williamson JR. Near-physiological in vitro assembly of 50S ribosomes involves parallel pathways. Nucleic Acids Research. PMID 36864669 DOI: 10.1093/nar/gkad082 |
0.236 |
|
| 2015 |
Passos DOd, Lyumkis D. Large-Scale 3D Heterogeneity Analysis of CryoEM Data Using Likelihood-Based Classification in Frealign Microscopy and Microanalysis. 21: 1201-1202. DOI: 10.1017/S1431927615006790 |
0.235 |
|
| 2023 |
Aiyer S, Baldwin PR, Tan SM, Shan Z, Oh J, Mehrani A, Bowman ME, Louie G, Passos DO, Đorđević-Marquardt S, Mietzsch M, Hull JA, Hoshika S, Barad BA, Grotjahn DA, ... ... Lyumkis D, et al. Overcoming Resolution Attenuation During Tilted Cryo-EM Data Collection. Biorxiv : the Preprint Server For Biology. PMID 37503021 DOI: 10.1101/2023.07.14.548955 |
0.233 |
|
| 2023 |
Sheng K, Li N, Rabuck-Gibbons JN, Dong X, Lyumkis D, Williamson JR. Assembly landscape for the bacterial large ribosomal subunit. Nature Communications. 14: 5220. PMID 37633970 DOI: 10.1038/s41467-023-40859-w |
0.232 |
|
| 2021 |
Passos DO, Li M, Craigie R, Lyumkis D. Retroviral integrase: Structure, mechanism, and inhibition. The Enzymes. 50: 249-300. PMID 34861940 DOI: 10.1016/bs.enz.2021.06.007 |
0.231 |
|
| 2022 |
Jóźwik IK, Li W, Zhang DW, Wong D, Grawenhoff J, Ballandras-Colas A, Aiyer S, Cherepanov P, Engelman AN, Lyumkis D. B-to-A transition in target DNA during retroviral integration. Nucleic Acids Research. PMID 35947647 DOI: 10.1093/nar/gkac644 |
0.226 |
|
| 2021 |
Smith SJ, Zhao XZ, Passos DO, Pye VE, Cherepanov P, Lyumkis D, Burke TR, Hughes SH. HIV-1 Integrase Inhibitors with Modifications That Affect Their Potencies against Drug Resistant Integrase Mutants. Acs Infectious Diseases. PMID 33686850 DOI: 10.1021/acsinfecdis.0c00819 |
0.223 |
|
| 2023 |
Sun Q, Biswas A, Lyumkis D, Levy R, Deng N. Elucidating the molecular determinants for binding modes of a third-generation HIV-1 integrase strand transfer inhibitor: Importance of side chain and solvent reorganization. Biorxiv : the Preprint Server For Biology. PMID 38077045 DOI: 10.1101/2023.11.29.569269 |
0.208 |
|
| 2024 |
Sun Q, Biswas A, Lyumkis D, Levy R, Deng N. Elucidating the Molecular Determinants of the Binding Modes of a Third-Generation HIV-1 Integrase Strand Transfer Inhibitor: The Importance of Side Chain and Solvent Reorganization. Viruses. 16. PMID 38257776 DOI: 10.3390/v16010076 |
0.204 |
|
| 2024 |
Dong X, Sheng K, Gebert LFR, Aiyer S, MacRae IJ, Lyumkis D, Williamson JR. Assembly of the Bacterial Ribosome with Circularly Permuted rRNA. Biorxiv : the Preprint Server For Biology. PMID 38644992 DOI: 10.1101/2024.04.10.588894 |
0.201 |
|
| 2023 |
Oh J, Shan Z, Hoshika S, Xu J, Chong J, Benner SA, Lyumkis D, Wang D. A unified Watson-Crick geometry drives transcription of six-letter expanded DNA alphabets by E. coli RNA polymerase. Nature Communications. 14: 8219. PMID 38086811 DOI: 10.1038/s41467-023-43735-9 |
0.201 |
|
| 2023 |
Haack DB, Rudolfs B, Zhang C, Lyumkis D, Toor N. Structural basis of branching during RNA splicing. Nature Structural & Molecular Biology. PMID 38057551 DOI: 10.1038/s41594-023-01150-0 |
0.198 |
|
| 2023 |
Baldwin PR, Aiyer S, Strutzenberg TS, Lyumkis D. Anisotropy in CryoEM Resolution is Dominated by Preferred Orientations, but not Structure Factors: A Study Using a Highly Symmetric Structure. Microscopy and Microanalysis : the Official Journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada. 29: 1021-1023. PMID 37613383 DOI: 10.1093/micmic/ozad067.517 |
0.186 |
|
| 2021 |
Smith SJ, Zhao XZ, Passos DO, Lyumkis D, Burke TR, Hughes SH. Integrase Strand Transfer Inhibitors Are Effective Anti-HIV Drugs. Viruses. 13. PMID 33572956 DOI: 10.3390/v13020205 |
0.185 |
|
| 2023 |
Li M, Oliveira Passos D, Shan Z, Smith SJ, Sun Q, Biswas A, Choudhuri I, Strutzenberg TS, Haldane A, Deng N, Li Z, Zhao XZ, Briganti L, Kvaratskhelia M, Burke TR, ... ... Lyumkis D, et al. Mechanisms of HIV-1 integrase resistance to dolutegravir and potent inhibition of drug-resistant variants. Science Advances. 9: eadg5953. PMID 37478179 DOI: 10.1126/sciadv.adg5953 |
0.185 |
|
| 2022 |
Lyumkis D, Horton NC. The role of filamentation in activation and DNA sequence specificity of the sequence-specific endonuclease SgrAI. Biochemical Society Transactions. 50: 1703-1714. PMID 36398769 DOI: 10.1042/BST20220547 |
0.182 |
|
| 2022 |
Shan Z, Ghadirian N, Lyumkis D, Horton NC. Pretransition state and apo structures of the filament-forming enzyme SgrAI elucidate mechanisms of activation and substrate specificity. The Journal of Biological Chemistry. 298: 101760. PMID 35202658 DOI: 10.1016/j.jbc.2022.101760 |
0.181 |
|
| 2024 |
Biswas A, Choudhuri I, Arnold E, Lyumkis D, Haldane A, Levy RM. Kinetic coevolutionary models predict the temporal emergence of HIV-1 resistance mutations under drug selection pressure. Proceedings of the National Academy of Sciences of the United States of America. 121: e2316662121. PMID 38557187 DOI: 10.1073/pnas.2316662121 |
0.15 |
|
| 2021 |
Aiyer S, Zhang C, Baldwin PR, Lyumkis D. Evaluating Local and Directional Resolution of Cryo-EM Density Maps. Methods in Molecular Biology (Clifton, N.J.). 2215: 161-187. PMID 33368004 DOI: 10.1007/978-1-0716-0966-8_8 |
0.126 |
|
| 2024 |
Sheng K, Dong X, Aiyer S, Lee J, Marquardt SD, Lyumkis D, Williamson JR. Domain consolidation in Bacterial 50S assembly revealed by Anti-Sense Oligonucleotide Probing. Biorxiv : the Preprint Server For Biology. PMID 38765969 DOI: 10.1101/2024.05.08.593220 |
0.12 |
|
| 2024 |
Van Veen D, Galaz-Montoya JG, Shen L, Baldwin P, Chaudhari AS, Lyumkis D, Schmid MF, Chiu W, Pauly J. Missing Wedge Completion via Unsupervised Learning with Coordinate Networks. Biorxiv : the Preprint Server For Biology. PMID 38712113 DOI: 10.1101/2024.04.12.589090 |
0.12 |
|
| 2023 |
Kumar N, Gray E, Lyumkis D, Mehrani A. CryoFAST™: Automated Cryo-Electron Microscopy Data Acquisition Using Machine Learning. Microscopy and Microanalysis : the Official Journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada. 29: 1036. PMID 37613294 DOI: 10.1093/micmic/ozad067.527 |
0.115 |
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| Hide low-probability matches. |