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Jeremy E Wilusz - Publications

Affiliations: 
2006-2009 Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 
 2009-2014 Koch Institute Massachusetts Institute of Technology, Cambridge, MA, United States 
 2014-2021 Biochemistry & Biophysics University of Pennsylvania Perelman School of Medicine 
 2021- Biochemistry & Molecular Biology Baylor College of Medicine, Houston, TX 
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58 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Stringer BW, Gabryelska M, Marri S, Clark L, Lin H, Gantley L, Liu R, Wilusz JE, Conn VM, Conn SJ. Versatile toolkit for highly-efficient and scarless overexpression of circular RNAs. Biorxiv : the Preprint Server For Biology. PMID 38045421 DOI: 10.1101/2023.11.21.568171  0.611
2023 Fujiwara R, Zhai SN, Liang D, Shah AP, Tracey M, Ma XK, Fields CJ, Mendoza-Figueroa MS, Meline MC, Tatomer DC, Yang L, Wilusz JE. IntS6 and the Integrator phosphatase module tune the efficiency of select premature transcription termination events. Molecular Cell. PMID 37995689 DOI: 10.1016/j.molcel.2023.10.035  0.821
2023 Lu F, Park BJ, Fujiwara R, Wilusz JE, Gilmour DS, Lehmann R, Lionnet T. Integrator-mediated clustering of poised RNA polymerase II synchronizes histone transcription. Biorxiv : the Preprint Server For Biology. PMID 37873455 DOI: 10.1101/2023.10.07.561364  0.776
2023 Scacchetti A, Shields EJ, Trigg NA, Wilusz JE, Conine CC, Bonasio R. A ligation-independent sequencing method reveals tRNA-derived RNAs with blocked 3' termini. Biorxiv : the Preprint Server For Biology. PMID 37333231 DOI: 10.1101/2023.06.06.543899  0.61
2023 Chen LL, Bindereif A, Bozzoni I, Chang HY, Matera AG, Gorospe M, Hansen TB, Kjems J, Ma XK, Pek JW, Rajewsky N, Salzman J, Wilusz JE, Yang L, Zhao F. A guide to naming eukaryotic circular RNAs. Nature Cell Biology. PMID 36658223 DOI: 10.1038/s41556-022-01066-9  0.757
2023 Mattick JS, Amaral PP, Carninci P, Carpenter S, Chang HY, Chen LL, Chen R, Dean C, Dinger ME, Fitzgerald KA, Gingeras TR, Guttman M, Hirose T, Huarte M, Johnson R, ... ... Wilusz JE, et al. Long non-coding RNAs: definitions, functions, challenges and recommendations. Nature Reviews. Molecular Cell Biology. PMID 36596869 DOI: 10.1038/s41580-022-00566-8  0.788
2022 Antony C, George SS, Blum J, Somers P, Thorsheim CL, Wu-Corts DJ, Ai Y, Gao L, Lv K, Tremblay MG, Moss T, Tan K, Wilusz JE, Ganley ARD, Pimkin M, et al. Control of ribosomal RNA synthesis by hematopoietic transcription factors. Molecular Cell. PMID 36113481 DOI: 10.1016/j.molcel.2022.08.027  0.855
2022 Yang L, Wilusz JE, Chen LL. Biogenesis and Regulatory Roles of Circular RNAs. Annual Review of Cell and Developmental Biology. PMID 35609906 DOI: 10.1146/annurev-cellbio-120420-125117  0.683
2022 Ai Y, Liang D, Wilusz JE. CRISPR/Cas13 effectors have differing extents of off-target effects that limit their utility in eukaryotic cells. Nucleic Acids Research. PMID 35244715 DOI: 10.1093/nar/gkac159  0.843
2021 Cable J, Heard E, Hirose T, Prasanth KV, Chen LL, Henninger JE, Quinodoz SA, Spector DL, Diermeier SD, Porman AM, Kumar D, Feinberg MW, Shen X, Unfried JP, Johnson R, ... ... Wilusz JE, et al. Noncoding RNAs: biology and applications-a Keystone Symposia report. Annals of the New York Academy of Sciences. PMID 34791665 DOI: 10.1111/nyas.14713  0.879
2021 Chen LL, Wilusz JE. Methods for circular RNAs. Methods (San Diego, Calif.). PMID 34601050 DOI: 10.1016/j.ymeth.2021.09.011  0.578
2021 Liang D, Tatomer DC, Wilusz JE. Use of circular RNAs as markers of readthrough transcription to identify factors regulating cleavage/polyadenylation events. Methods (San Diego, Calif.). PMID 33882363 DOI: 10.1016/j.ymeth.2021.04.012  0.886
2021 Dodbele S, Mutlu N, Wilusz JE. Best practices to ensure robust investigation of circular RNAs: pitfalls and tips. Embo Reports. 22: e52072. PMID 33629517 DOI: 10.15252/embr.202052072  0.85
2021 Meganck RM, Liu J, Hale AE, Simon KE, Fanous MM, Vincent HA, Wilusz JE, Moorman NJ, Marzluff WF, Asokan A. Engineering highly efficient backsplicing and translation of synthetic circRNAs. Molecular Therapy. Nucleic Acids. 23: 821-834. PMID 33614232 DOI: 10.1016/j.omtn.2021.01.003  0.735
2021 Tatomer DC, Liang D, Wilusz JE. RNAi Screening to Identify Factors That Control Circular RNA Localization. Methods in Molecular Biology (Clifton, N.J.). 2209: 321-332. PMID 33201478 DOI: 10.1007/978-1-0716-0935-4_20  0.885
2020 He C, Bozler J, Janssen KA, Wilusz JE, Garcia BA, Schorn AJ, Bonasio R. TET2 chemically modifies tRNAs and regulates tRNA fragment levels. Nature Structural & Molecular Biology. PMID 33230319 DOI: 10.1038/s41594-020-00526-w  0.617
2020 Mendoza-Figueroa MS, Tatomer DC, Wilusz JE. The Integrator Complex in Transcription and Development. Trends in Biochemical Sciences. PMID 32800671 DOI: 10.1016/j.tibs.2020.07.004  0.867
2020 Dodbele S, Wilusz JE. Ending on a high note: Downstream ORFs enhance mRNA translational output. The Embo Journal. 39: e105959. PMID 32744723 DOI: 10.15252/embj.2020105959  0.798
2020 Garikipati VNS, Verma SK, Cheng Z, Liang D, Truongcao MM, Cimini M, Yue Y, Huang G, Wang C, Benedict C, Tang Y, Mallaredy V, Ibetti J, Grisanti L, Schumacher SM, ... ... Wilusz JE, et al. Author Correction: Circular RNA CircFndc3b modulates cardiac repair after myocardial infarction via FUS/VEGF-A axis. Nature Communications. 11: 2234. PMID 32358483 DOI: 10.1038/S41467-020-15382-X  0.305
2020 Tatomer DC, Wilusz JE. Erratum: Attenuation of Eukaryotic Protein-Coding Gene Expression via Premature Transcription Termination. Cold Spring Harbor Symposia On Quantitative Biology. PMID 32108032 DOI: 10.1101/sqb.2019.84.039784  0.762
2020 Tatomer DC, Wilusz JE. Attenuation of Eukaryotic Protein-Coding Gene Expression via Premature Transcription Termination. Cold Spring Harbor Symposia On Quantitative Biology. PMID 32086332 DOI: 10.1101/sqb.2019.84.039644  0.862
2020 Xiao MS, Ai Y, Wilusz JE. Biogenesis and Functions of Circular RNAs Come into Focus. Trends in Cell Biology. PMID 31973951 DOI: 10.1016/j.tcb.2019.12.004  0.84
2019 Elrod ND, Henriques T, Huang KL, Tatomer DC, Wilusz JE, Wagner EJ, Adelman K. The Integrator Complex Attenuates Promoter-Proximal Transcription at Protein-Coding Genes. Molecular Cell. 76: 738-752.e7. PMID 31809743 DOI: 10.1016/J.Molcel.2019.10.034  0.831
2019 Fujiwara R, Damodaren N, Wilusz JE, Murakami K. The capping enzyme facilitates promoter escape and assembly of a follow-on preinitiation complex for reinitiation. Proceedings of the National Academy of Sciences of the United States of America. PMID 31591205 DOI: 10.1073/pnas.1905449116  0.832
2019 Garikipati VNS, Verma SK, Cheng Z, Liang D, Truongcao MM, Cimini M, Yue Y, Huang G, Wang C, Benedict C, Tang Y, Mallaredy V, Ibetti J, Grisanti L, Schumacher SM, ... ... Wilusz JE, et al. Circular RNA CircFndc3b modulates cardiac repair after myocardial infarction via FUS/VEGF-A axis. Nature Communications. 10: 4317. PMID 31541092 DOI: 10.1038/S41467-019-11777-7  0.308
2019 Tatomer DC, Elrod ND, Liang D, Xiao MS, Jiang JZ, Jonathan M, Huang KL, Wagner EJ, Cherry S, Wilusz JE. The Integrator complex cleaves nascent mRNAs to attenuate transcription. Genes & Development. PMID 31530651 DOI: 10.1101/Gad.330167.119  0.862
2019 Xiao MS, Wilusz JE. An improved method for circular RNA purification using RNase R that efficiently removes linear RNAs containing G-quadruplexes or structured 3' ends. Nucleic Acids Research. PMID 31269210 DOI: 10.1093/nar/gkz576  0.859
2019 Kearse MG, Goldman DH, Choi J, Nwaezeapu C, Liang D, Green KM, Goldstrohm AC, Todd PK, Green R, Wilusz JE. Ribosome queuing enables non-AUG translation to be resistant to multiple protein synthesis inhibitors. Genes & Development. PMID 31171704 DOI: 10.1101/Gad.324715.119  0.795
2019 Wilusz JE. Circle the Wagons: Circular RNAs Control Innate Immunity. Cell. 177: 797-799. PMID 31051101 DOI: 10.1016/j.cell.2019.04.020  0.612
2018 Meganck RM, Borchardt EK, Castellanos Rivera RM, Scalabrino ML, Wilusz JE, Marzluff WF, Asokan A. Tissue-Dependent Expression and Translation of Circular RNAs with Recombinant AAV Vectors In Vivo. Molecular Therapy. Nucleic Acids. 13: 89-98. PMID 30245471 DOI: 10.1016/J.Omtn.2018.08.008  0.736
2018 Huang C, Liang D, Tatomer DC, Wilusz JE. A length-dependent evolutionarily conserved pathway controls nuclear export of circular RNAs. Genes & Development. PMID 29773557 DOI: 10.1101/gad.314856.118  0.852
2018 Wilusz JE. A 360° view of circular RNAs: From biogenesis to functions. Wiley Interdisciplinary Reviews. Rna. 9: e1478. PMID 29655315 DOI: 10.1002/wrna.1478  0.713
2017 Liang D, Tatomer DC, Luo Z, Wu H, Yang L, Chen LL, Cherry S, Wilusz JE. The Output of Protein-Coding Genes Shifts to Circular RNAs When the Pre-mRNA Processing Machinery Is Limiting. Molecular Cell. 68: 940-954.e3. PMID 29174924 DOI: 10.1016/J.Molcel.2017.10.034  0.882
2017 Kearse MG, Wilusz JE. Non-AUG translation: a new start for protein synthesis in eukaryotes. Genes & Development. 31: 1717-1731. PMID 28982758 DOI: 10.1101/Gad.305250.117  0.8
2017 Tatomer DC, Liang D, Wilusz JE. Inducible Expression of Eukaryotic Circular RNAs from Plasmids. Methods in Molecular Biology (Clifton, N.J.). 1648: 143-154. PMID 28766295 DOI: 10.1007/978-1-4939-7204-3_11  0.884
2017 Chen YG, Kim MV, Chen X, Batista PJ, Aoyama S, Wilusz JE, Iwasaki A, Chang HY. Sensing Self and Foreign Circular RNAs by Intron Identity. Molecular Cell. PMID 28625551 DOI: 10.1016/J.Molcel.2017.05.022  0.556
2017 Tatomer DC, Wilusz JE. An Unchartered Journey for Ribosomes: Circumnavigating Circular RNAs to Produce Proteins. Molecular Cell. 66: 1-2. PMID 28388436 DOI: 10.1016/j.molcel.2017.03.011  0.788
2017 Wilusz JE. Circular RNAs: Unexpected outputs of many protein-coding genes. Rna Biology. 14: 1007-1017. PMID 27571848 DOI: 10.1080/15476286.2016.1227905  0.713
2016 He C, Sidoli S, Warneford-Thomson R, Tatomer DC, Wilusz JE, Garcia BA, Bonasio R. High-Resolution Mapping of RNA-Binding Regions in the Nuclear Proteome of Embryonic Stem Cells. Molecular Cell. 64: 416-430. PMID 27768875 DOI: 10.1016/J.Molcel.2016.09.034  0.854
2016 Molleston JM, Sabin LR, Moy RH, Menghani SV, Rausch K, Gordesky-Gold B, Hopkins KC, Zhou R, Jensen TH, Wilusz JE, Cherry S. A conserved virus-induced cytoplasmic TRAMP-like complex recruits the exosome to target viral RNA for degradation. Genes & Development. 30: 1658-70. PMID 27474443 DOI: 10.1101/Gad.284604.116  0.596
2016 Wilusz JE. Long noncoding RNAs: Re-writing dogmas of RNA processing and stability. Biochimica Et Biophysica Acta. 1859: 128-38. PMID 26073320 DOI: 10.1016/j.bbagrm.2015.06.003  0.681
2015 Doucet AJ, Wilusz JE, Miyoshi T, Liu Y, Moran JV. A 3' Poly(A) Tract Is Required for LINE-1 Retrotransposition. Molecular Cell. PMID 26585388 DOI: 10.1016/j.molcel.2015.10.012  0.59
2015 Kramer MC, Liang D, Tatomer DC, Gold B, March ZM, Cherry S, Wilusz JE. Combinatorial control of Drosophila circular RNA expression by intronic repeats, hnRNPs, and SR proteins. Genes & Development. 29: 2168-82. PMID 26450910 DOI: 10.1101/Gad.270421.115  0.883
2015 Wilusz JE. Repetitive elements regulate circular RNA biogenesis. Mobile Genetic Elements. 5: 1-7. PMID 26442181 DOI: 10.1080/2159256X.2015.1045682  0.662
2015 Wilusz JE. Removing roadblocks to deep sequencing of modified RNAs Nature Methods. 12: 821-822. PMID 26317237 DOI: 10.1038/nmeth.3516  0.546
2015 Wilusz JE. Controlling translation via modulation of tRNA levels. Wiley Interdisciplinary Reviews. Rna. 6: 453-70. PMID 25919480 DOI: 10.1002/wrna.1287  0.632
2015 Kuhn CD, Wilusz JE, Zheng Y, Beal PA, Joshua-Tor L. On-enzyme refolding permits small RNA and tRNA surveillance by the CCA-adding enzyme. Cell. 160: 644-58. PMID 25640237 DOI: 10.1016/J.Cell.2015.01.005  0.584
2014 Wilusz JE, Wilusz J. Nonsense-mediated RNA decay: at the 'cutting edge' of regulated snoRNA production. Genes & Development. 28: 2447-9. PMID 25403177 DOI: 10.1101/Gad.254193.114  0.729
2014 Liang D, Wilusz JE. Short intronic repeat sequences facilitate circular RNA production. Genes & Development. 28: 2233-47. PMID 25281217 DOI: 10.1101/gad.251926.114  0.67
2013 Wilusz JE, Sharp PA. Molecular biology. A circuitous route to noncoding RNA. Science (New York, N.Y.). 340: 440-1. PMID 23620042 DOI: 10.1126/science.1238522  0.73
2012 Wilusz JE, JnBaptiste CK, Lu LY, Kuhn CD, Joshua-Tor L, Sharp PA. A triple helix stabilizes the 3' ends of long noncoding RNAs that lack poly(A) tails. Genes & Development. 26: 2392-407. PMID 23073843 DOI: 10.1101/Gad.204438.112  0.878
2011 Wilusz JE, Whipple JM, Phizicky EM, Sharp PA. tRNAs marked with CCACCA are targeted for degradation. Science (New York, N.Y.). 334: 817-21. PMID 22076379 DOI: 10.1126/Science.1213671  0.558
2010 Wilusz JE, Spector DL. An unexpected ending: noncanonical 3' end processing mechanisms. Rna (New York, N.Y.). 16: 259-66. PMID 20007330 DOI: 10.1261/Rna.1907510  0.776
2009 Wilusz JE, Sunwoo H, Spector DL. Long noncoding RNAs: functional surprises from the RNA world. Genes & Development. 23: 1494-504. PMID 19571179 DOI: 10.1101/Gad.1800909  0.894
2009 Sunwoo H, Dinger ME, Wilusz JE, Amaral PP, Mattick JS, Spector DL. MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles. Genome Research. 19: 347-59. PMID 19106332 DOI: 10.1101/Gr.087775.108  0.842
2008 Wilusz JE, Freier SM, Spector DL. 3' end processing of a long nuclear-retained noncoding RNA yields a tRNA-like cytoplasmic RNA. Cell. 135: 919-32. PMID 19041754 DOI: 10.1016/J.Cell.2008.10.012  0.809
2006 Wilusz JE, Beemon KL. The negative regulator of splicing element of Rous sarcoma virus promotes polyadenylation. Journal of Virology. 80: 9634-40. PMID 16973567 DOI: 10.1128/JVI.00845-06  0.423
2005 Wilusz JE, Devanney SC, Caputi M. Chimeric peptide nucleic acid compounds modulate splicing of the bcl-x gene in vitro and in vivo Nucleic Acids Research. 33: 6547-6554. PMID 16299354 DOI: 10.1093/nar/gki960  0.302
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