Amol Prakash, Ph.D.
Affiliations: | 2006 | University of Washington, Seattle, Seattle, WA |
Area:
Computer ScienceGoogle:
"Amol Prakash"Parents
Sign in to add mentor| Benno Schwikowski | grad student | 2006 | University of Washington | |
| (Algorithms for comparative sequence analysis and comparative proteomics.) | ||||
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Publications
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| Prakash A, Ahmad S, Majumder S, et al. (2019) Bolt: a New Age Peptide Search Engine for Comprehensive MS/MS Sequencing Through Vast Protein Databases in Minutes. Journal of the American Society For Mass Spectrometry |
| Prakash A, Majumder S, Ahmad S, et al. (2019) Detection and verification of 2.3 million cancer mutations in NCI60 cancer cell lines with a cloud search engine. Journal of Proteomics. 103488 |
| Peterman S, Fang B, Hoffmann M, et al. (2016) Abstract LB-140: Scaling discovery proteomics to large lung cancer cohorts using data independent acquisition Cancer Research. 76 |
| Lopez MF, Krastins B, Sarracino DA, et al. (2015) Proteomic signatures of serum albumin-bound proteins from stroke patients with and without endovascular closure of PFO are significantly different and suggest a novel mechanism for cholesterol efflux. Clinical Proteomics. 12: 2 |
| Prakash A, Peterman S, Ahmad S, et al. (2014) Hybrid data acquisition and processing strategies with increased throughput and selectivity: pSMART analysis for global qualitative and quantitative analysis. Journal of Proteome Research. 13: 5415-30 |
| Peterman S, Niederkofler EE, Phillips DA, et al. (2014) An automated, high-throughput method for targeted quantification of intact insulin and its therapeutic analogs in human serum or plasma coupling mass spectrometric immunoassay with high resolution and accurate mass detection (MSIA-HR/AM). Proteomics. 14: 1445-56 |
| Niederkofler EE, Phillips DA, Krastins B, et al. (2013) Targeted selected reaction monitoring mass spectrometric immunoassay for insulin-like growth factor 1. Plos One. 8: e81125 |
| Krastins B, Prakash A, Sarracino DA, et al. (2013) Rapid development of sensitive, high-throughput, quantitative and highly selective mass spectrometric targeted immunoassays for clinically important proteins in human plasma and serum. Clinical Biochemistry. 46: 399-410 |
| Lopez MF, Sarracino DA, Vogelsang M, et al. (2012) Heart-brain signaling in patent foramen ovale-related stroke: differential plasma proteomic expression patterns revealed with a 2-pass liquid chromatography-tandem mass spectrometry discovery workflow. Journal of Investigative Medicine : the Official Publication of the American Federation For Clinical Research. 60: 1122-30 |
| MacDonald ML, Ciccimaro E, Prakash A, et al. (2012) Biochemical fractionation and stable isotope dilution liquid chromatography-mass spectrometry for targeted and microdomain-specific protein quantification in human postmortem brain tissue Molecular and Cellular Proteomics. 11: 1670-1681 |