| Year |
Citation |
Score |
| 2019 |
Prakash A, Ahmad S, Majumder S, Jenkins C, Orsburn B. Bolt: a New Age Peptide Search Engine for Comprehensive MS/MS Sequencing Through Vast Protein Databases in Minutes. Journal of the American Society For Mass Spectrometry. PMID 31452088 DOI: 10.1007/S13361-019-02306-3 |
0.379 |
|
| 2019 |
Prakash A, Majumder S, Ahmad S, Varkey M, Anish TA, Jenkins C, Rigby M, Orsburn B. Detection and verification of 2.3 million cancer mutations in NCI60 cancer cell lines with a cloud search engine. Journal of Proteomics. 103488. PMID 31445215 DOI: 10.1016/J.Jprot.2019.103488 |
0.323 |
|
| 2016 |
Peterman S, Fang B, Hoffmann M, Prakash A, Stewart PA, Liu R, Smith M, Johnson J, Eschrich S, Zhang G, Haura E, Koomen J. Abstract LB-140: Scaling discovery proteomics to large lung cancer cohorts using data independent acquisition Cancer Research. 76. DOI: 10.1158/1538-7445.Am2016-Lb-140 |
0.386 |
|
| 2015 |
Lopez MF, Krastins B, Sarracino DA, Byram G, Vogelsang MS, Prakash A, Peterman S, Ahmad S, Vadali G, Deng W, Inglessis I, Wickham T, Feeney K, Dec GW, Palacios I, et al. Proteomic signatures of serum albumin-bound proteins from stroke patients with and without endovascular closure of PFO are significantly different and suggest a novel mechanism for cholesterol efflux. Clinical Proteomics. 12: 2. PMID 25678897 DOI: 10.1186/1559-0275-12-2 |
0.337 |
|
| 2014 |
Prakash A, Peterman S, Ahmad S, Sarracino D, Frewen B, Vogelsang M, Byram G, Krastins B, Vadali G, Lopez M. Hybrid data acquisition and processing strategies with increased throughput and selectivity: pSMART analysis for global qualitative and quantitative analysis. Journal of Proteome Research. 13: 5415-30. PMID 25244318 DOI: 10.1021/Pr5003017 |
0.387 |
|
| 2014 |
Peterman S, Niederkofler EE, Phillips DA, Krastins B, Kiernan UA, Tubbs KA, Nedelkov D, Prakash A, Vogelsang MS, Schoeder T, Couchman L, Taylor DR, Moniz CF, Vadali G, Byram G, et al. An automated, high-throughput method for targeted quantification of intact insulin and its therapeutic analogs in human serum or plasma coupling mass spectrometric immunoassay with high resolution and accurate mass detection (MSIA-HR/AM). Proteomics. 14: 1445-56. PMID 24668948 DOI: 10.1002/Pmic.201300300 |
0.36 |
|
| 2013 |
Niederkofler EE, Phillips DA, Krastins B, Kulasingam V, Kiernan UA, Tubbs KA, Peterman SM, Prakash A, Diamandis EP, Lopez MF, Nedelkov D. Targeted selected reaction monitoring mass spectrometric immunoassay for insulin-like growth factor 1. Plos One. 8: e81125. PMID 24278387 DOI: 10.1371/Journal.Pone.0081125 |
0.395 |
|
| 2013 |
Krastins B, Prakash A, Sarracino DA, Nedelkov D, Niederkofler EE, Kiernan UA, Nelson R, Vogelsang MS, Vadali G, Garces A, Sutton JN, Peterman S, Byram G, Darbouret B, Pérusse JR, et al. Rapid development of sensitive, high-throughput, quantitative and highly selective mass spectrometric targeted immunoassays for clinically important proteins in human plasma and serum. Clinical Biochemistry. 46: 399-410. PMID 23313081 DOI: 10.1016/J.Clinbiochem.2012.12.019 |
0.354 |
|
| 2012 |
Lopez MF, Sarracino DA, Vogelsang M, Sutton JN, Athanas M, Krastins B, Garces A, Prakash A, Peterman S, Demirjian Z, Inglessis-Azuaje I, Feeney K, Elia M, McMullin D, Dec GW, et al. Heart-brain signaling in patent foramen ovale-related stroke: differential plasma proteomic expression patterns revealed with a 2-pass liquid chromatography-tandem mass spectrometry discovery workflow. Journal of Investigative Medicine : the Official Publication of the American Federation For Clinical Research. 60: 1122-30. PMID 23147404 DOI: 10.2310/Jim.0B013E318276De0E |
0.312 |
|
| 2012 |
MacDonald ML, Ciccimaro E, Prakash A, Banerjee A, Seeholzer SH, Blair IA, Hahn CG. Biochemical fractionation and stable isotope dilution liquid chromatography-mass spectrometry for targeted and microdomain-specific protein quantification in human postmortem brain tissue Molecular and Cellular Proteomics. 11: 1670-1681. PMID 22942359 DOI: 10.1074/Mcp.M112.021766 |
0.328 |
|
| 2012 |
Prakash A, Rezai T, Krastins B, Sarracino D, Athanas M, Russo P, Zhang H, Tian Y, Li Y, Kulasingam V, Drabovich A, Smith CR, Batruch I, Oran PE, Fredolini C, et al. Interlaboratory reproducibility of selective reaction monitoring assays using multiple upfront analyte enrichment strategies. Journal of Proteome Research. 11: 3986-95. PMID 22639787 DOI: 10.1021/Pr300014S |
0.449 |
|
| 2012 |
Lopez MF, Sarracino DA, Prakash A, Athanas M, Krastins B, Rezai T, Sutton JN, Peterman S, Gvozdyak O, Chou S, Lo E, Buonanno F, Ning M. Discrimination of ischemic and hemorrhagic strokes using a multiplexed, mass spectrometry-based assay for serum apolipoproteins coupled to multi-marker ROC algorithm. Proteomics. Clinical Applications. 6: 190-200. PMID 22532455 DOI: 10.1002/Prca.201100041 |
0.312 |
|
| 2011 |
Lopez MF, Sarracino D, Athanas M, Krastins B, Prakash A, Garces A. Global profiling and relative quantifiction of histones, histone PTMs and histone-modifying enzymes in mesenchymal stem cells using LC-MS/MS and a novel PerfectPair mass difference algorithm. Cell Cycle (Georgetown, Tex.). 10: 4181-3. PMID 22157186 DOI: 10.4161/Cc.10.24.18836 |
0.309 |
|
| 2011 |
Campbell J, Rezai T, Prakash A, Krastins B, Dayon L, Ward M, Robinson S, Lopez M. Evaluation of absolute peptide quantitation strategies using selected reaction monitoring. Proteomics. 11: 1148-52. PMID 21365756 DOI: 10.1002/Pmic.201000511 |
0.325 |
|
| 2011 |
Li Y, Tian Y, Rezai T, Prakash A, Lopez MF, Chan DW, Zhang H. Simultaneous analysis of glycosylated and sialylated prostate-specific antigen revealing differential distribution of glycosylated prostate-specific antigen isoforms in prostate cancer tissues. Analytical Chemistry. 83: 240-5. PMID 21141837 DOI: 10.1021/Ac102319G |
0.301 |
|
| 2011 |
Kiyonami R, Schoen A, Prakash A, Peterman S, Zabrouskov V, Picotti P, Aebersold R, Huhmer A, Domon B. Increased selectivity, analytical precision, and throughput in targeted proteomics. Molecular & Cellular Proteomics : McP. 10: M110.002931. PMID 20664071 DOI: 10.1074/Mcp.M110.002931 |
0.378 |
|
| 2011 |
Lopez MF, Kuppusamy R, Sarracino DA, Prakash A, Athanas M, Krastins B, Rezai T, Sutton JN, Peterman S, Nicolaides K. Mass spectrometric discovery and selective reaction monitoring (SRM) of putative protein biomarker candidates in first trimester Trisomy 21 maternal serum. Journal of Proteome Research. 10: 133-42. PMID 20499897 DOI: 10.1021/Pr100153J |
0.443 |
|
| 2010 |
Prakash A, Rezai T, Krastins B, Sarracino D, Athanas M, Russo P, Ross MM, Zhang H, Tian Y, Kulasingam V, Drabovich AP, Smith C, Batruch I, Liotta L, Petricoin E, et al. Platform for establishing interlaboratory reproducibility of selected reaction monitoring-based mass spectrometry peptide assays. Journal of Proteome Research. 9: 6678-88. PMID 20945832 DOI: 10.1021/Pr100821M |
0.426 |
|
| 2010 |
Jin LL, Tong J, Prakash A, Peterman SM, St-Germain JR, Taylor P, Trudel S, Moran MF. Measurement of protein phosphorylation stoichiometry by selected reaction monitoring mass spectrometry. Journal of Proteome Research. 9: 2752-61. PMID 20205385 DOI: 10.1021/Pr100024A |
0.397 |
|
| 2009 |
Prakash A, Tomazela DM, Frewen B, MacLean B, Merrihew G, Peterman S, MacCoss MJ. Expediting the development of targeted SRM assays: Using data from shotgun proteomics to automate method development Journal of Proteome Research. 8: 2733-2739. PMID 19326923 DOI: 10.1021/Pr801028B |
0.437 |
|
| 2007 |
Prakash A, Piening B, Whiteaker J, Zhang H, Shaffer SA, Martin D, Hohmann L, Cooke K, Olson JM, Hansen S, Flory MR, Lee H, Watts J, Goodlett DR, Aebersold R, et al. Assessing bias in experiment design for large scale mass spectrometry-based quantitative proteomics. Molecular & Cellular Proteomics : McP. 6: 1741-8. PMID 17617667 DOI: 10.1074/Mcp.M600470-Mcp200 |
0.609 |
|
| 2006 |
Piening BD, Wang P, Bangur CS, Whiteaker J, Zhang H, Feng LC, Keane JF, Eng JK, Tang H, Prakash A, McIntosh MW, Paulovich A. Quality control metrics for LC-MS feature detection tools demonstrated on Saccharomyces cerevisiae proteomic profiles. Journal of Proteome Research. 5: 1527-34. PMID 16823959 DOI: 10.1021/Pr050436J |
0.423 |
|
| 2006 |
Prakash A, Mallick P, Whiteaker J, Zhang H, Paulovich A, Flory M, Lee H, Aebersold R, Schwikowski B. Signal maps for mass spectrometry-based comparative proteomics. Molecular & Cellular Proteomics : McP. 5: 423-32. PMID 16269421 DOI: 10.1074/Mcp.M500133-Mcp200 |
0.595 |
|
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