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Harish Nagarajan - Publications

Affiliations: 
2012 Bioinformatics University of California, San Diego, La Jolla, CA 
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19/52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Hefzi H, Ang KS, Hanscho M, Bordbar A, Ruckerbauer D, Lakshmanan M, Orellana CA, Baycin-Hizal D, Huang Y, Ley D, Martinez VS, Kyriakopoulos S, Jiménez NE, Zielinski DC, Quek LE, ... ... Nagarajan H, et al. A Consensus Genome-scale Reconstruction of Chinese Hamster Ovary Cell Metabolism. Cell Systems. 3: 434-443.e8. PMID 27883890 DOI: 10.1016/J.Cels.2016.10.020  0.803
2016 Movahedi NS, Embree M, Nagarajan H, Zengler K, Chitsaz H. Efficient Synergistic Single-Cell Genome Assembly. Frontiers in Bioengineering and Biotechnology. 4: 42. PMID 27243002 DOI: 10.3389/Fbioe.2016.00042  0.68
2015 Ebrahim A, Almaas E, Bauer E, Bordbar A, Burgard AP, Chang RL, Dräger A, Famili I, Feist AM, Fleming RM, Fong SS, Hatzimanikatis V, Herrgård MJ, Holder A, Hucka M, ... ... Nagarajan H, et al. Do genome-scale models need exact solvers or clearer standards? Molecular Systems Biology. 11: 831. PMID 26467284 DOI: 10.15252/Msb.20156157  0.61
2014 Bordbar A, Nagarajan H, Lewis NE, Latif H, Ebrahim A, Federowicz S, Schellenberger J, Palsson BO. Minimal metabolic pathway structure is consistent with associated biomolecular interactions. Molecular Systems Biology. 10: 737. PMID 24987116 DOI: 10.15252/Msb.20145243  0.715
2014 Feist AM, Nagarajan H, Rotaru AE, Tremblay PL, Zhang T, Nevin KP, Lovley DR, Zengler K. Constraint-based modeling of carbon fixation and the energetics of electron transfer in Geobacter metallireducens. Plos Computational Biology. 10: e1003575. PMID 24762737 DOI: 10.1371/Journal.Pcbi.1003575  0.646
2014 Federowicz S, Kim D, Ebrahim A, Lerman J, Nagarajan H, Cho BK, Zengler K, Palsson B. Determining the control circuitry of redox metabolism at the genome-scale. Plos Genetics. 10: e1004264. PMID 24699140 DOI: 10.1371/Journal.Pgen.1004264  0.751
2014 Embree M, Qiu Y, Shieu W, Nagarajan H, O'Neil R, Lovley D, Zengler K. The iron stimulon and fur regulon of Geobacter sulfurreducens and their role in energy metabolism. Applied and Environmental Microbiology. 80: 2918-27. PMID 24584254 DOI: 10.1128/Aem.03916-13  0.609
2014 Embree M, Nagarajan H, Movahedi N, Chitsaz H, Zengler K. Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community. The Isme Journal. 8: 757-67. PMID 24152715 DOI: 10.1038/Ismej.2013.187  0.713
2013 Nagarajan H, Sahin M, Nogales J, Latif H, Lovley DR, Ebrahim A, Zengler K. Characterizing acetogenic metabolism using a genome-scale metabolic reconstruction of Clostridium ljungdahlii. Microbial Cell Factories. 12: 118. PMID 24274140 DOI: 10.1186/1475-2859-12-118  0.8
2013 Nagarajan H, Embree M, Rotaru AE, Shrestha PM, Feist AM, Palsson BØ, Lovley DR, Zengler K. Characterization and modelling of interspecies electron transfer mechanisms and microbial community dynamics of a syntrophic association. Nature Communications. 4: 2809. PMID 24264237 DOI: 10.1038/Ncomms3809  0.754
2013 Lewis NE, Liu X, Li Y, Nagarajan H, Yerganian G, O'Brien E, Bordbar A, Roth AM, Rosenbloom J, Bian C, Xie M, Chen W, Li N, Baycin-Hizal D, Latif H, et al. Genomic landscapes of Chinese hamster ovary cell lines as revealed by the Cricetulus griseus draft genome. Nature Biotechnology. 31: 759-65. PMID 23873082 DOI: 10.1038/Nbt.2624  0.731
2013 Latif H, Lerman JA, Portnoy VA, Tarasova Y, Nagarajan H, Schrimpe-Rutledge AC, Smith RD, Adkins JN, Lee DH, Qiu Y, Zengler K. The genome organization of Thermotoga maritima reflects its lifestyle. Plos Genetics. 9: e1003485. PMID 23637642 DOI: 10.1371/Journal.Pgen.1003485  0.769
2013 Qiu Y, Nagarajan H, Embree M, Shieu W, Abate E, Juárez K, Cho BK, Elkins JG, Nevin KP, Barrett CL, Lovley DR, Palsson BO, Zengler K. Characterizing the interplay between multiple levels of organization within bacterial sigma factor regulatory networks. Nature Communications. 4: 1755. PMID 23612296 DOI: 10.1038/Ncomms2743  0.683
2012 Baycin-Hizal D, Tabb DL, Chaerkady R, Chen L, Lewis NE, Nagarajan H, Sarkaria V, Kumar A, Wolozny D, Colao J, Jacobson E, Tian Y, O'Meally RN, Krag SS, Cole RN, et al. Proteomic analysis of Chinese hamster ovary cells. Journal of Proteome Research. 11: 5265-76. PMID 22971049 DOI: 10.1021/Pr300476W  0.652
2012 Kim D, Hong JS, Qiu Y, Nagarajan H, Seo JH, Cho BK, Tsai SF, Palsson BØ. Comparative analysis of regulatory elements between Escherichia coli and Klebsiella pneumoniae by genome-wide transcription start site profiling. Plos Genetics. 8: e1002867. PMID 22912590 DOI: 10.1371/Journal.Pgen.1002867  0.693
2012 Charusanti P, Fong NL, Nagarajan H, Pereira AR, Li HJ, Abate EA, Su Y, Gerwick WH, Palsson BO. Exploiting adaptive laboratory evolution of Streptomyces clavuligerus for antibiotic discovery and overproduction. Plos One. 7: e33727. PMID 22470465 DOI: 10.1371/Journal.Pone.0033727  0.481
2012 Lewis NE, Nagarajan H, Palsson BO. Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods. Nature Reviews. Microbiology. 10: 291-305. PMID 22367118 DOI: 10.1038/Nrmicro2737  0.709
2011 Xu X, Nagarajan H, Lewis NE, Pan S, Cai Z, Liu X, Chen W, Xie M, Wang W, Hammond S, Andersen MR, Neff N, Passarelli B, Koh W, Fan HC, et al. The genomic sequence of the Chinese hamster ovary (CHO)-K1 cell line. Nature Biotechnology. 29: 735-41. PMID 21804562 DOI: 10.1038/Nbt.1932  0.795
2010 Nagarajan H, Butler JE, Klimes A, Qiu Y, Zengler K, Ward J, Young ND, Methé BA, Palsson BØ, Lovley DR, Barrett CL. De Novo assembly of the complete genome of an enhanced electricity-producing variant of Geobacter sulfurreducens using only short reads. Plos One. 5: e10922. PMID 20544019 DOI: 10.1371/Journal.Pone.0010922  0.4
Low-probability matches (unlikely to be authored by this person)
2013 Nguyen DD, Wu CH, Moree WJ, Lamsa A, Medema MH, Zhao X, Gavilan RG, Aparicio M, Atencio L, Jackson C, Ballesteros J, Sanchez J, Watrous JD, Phelan VV, van de Wiel C, ... ... Nagarajan H, et al. MS/MS networking guided analysis of molecule and gene cluster families. Proceedings of the National Academy of Sciences of the United States of America. 110: E2611-20. PMID 23798442 DOI: 10.1073/Pnas.1303471110  0.279
2013 Nakatsuji T, Chiang HI, Jiang SB, Nagarajan H, Zengler K, Gallo RL. The microbiome extends to subepidermal compartments of normal skin. Nature Communications. 4: 1431. PMID 23385576 DOI: 10.1038/Ncomms2441  0.267
2015 Sivashanmugam M, Nagarajan H, Vetrivel U, Ramasubban G, Therese KL, Narahari MH. In silico analysis and prioritization of drug targets in Fusarium solani. Medical Hypotheses. 84: 81-4. PMID 25555413 DOI: 10.1016/j.mehy.2014.12.015  0.161
2012 Nagarajan H, Rathinam S, Darbha S. Synthesizing robust communication networks for unmanned aerial vehicles with resource constraints Asme 2012 5th Annual Dynamic Systems and Control Conference Joint With the Jsme 2012 11th Motion and Vibration Conference, Dscc 2012-Movic 2012. 1: 393-402. DOI: 10.1115/1.4028955  0.126
2014 Nagarajan H, Wei P, Rathinam S, Sun D. Heuristics for synthesizing robust networks with a diameter constraint Mathematical Problems in Engineering. 2014. DOI: 10.1155/2014/326963  0.124
2012 Nagarajan H, Rathinam S, Darbha S, Rajagopal K. Algorithms for synthesizing mechanical systems with maximal natural frequencies Nonlinear Analysis: Real World Applications. 13: 2154-2162. DOI: 10.1016/J.Nonrwa.2012.01.010  0.124
2012 Nagarajan H, Rathinam S, Darbha S, Rajagopal KR. Synthesizing robust communication networks for UAVs Proceedings of the American Control Conference. 3730-3735.  0.086
2005 Nagarajan H, McCoy M, Koshy CS, Lankarani HM. Design, fabrication and testing of a component HIC tester for aircraft applications International Journal of Crashworthiness. 10: 515-523. DOI: 10.1533/Ijcr.2005.0366  0.075
2008 Deininger K, Jin S, Nagarajan HK. Efficiency and equity impacts of rural land rental restrictions: Evidence from India European Economic Review. 52: 892-918. DOI: 10.1016/J.Euroecorev.2007.08.002  0.07
2005 Alshaer BJ, Nagarajan H, Beheshti HK, Lankarani HM, Shivaswamy S. Dynamics of a multibody mechanical system with lubricated long journal bearings Journal of Mechanical Design, Transactions of the Asme. 127: 493-498. DOI: 10.1115/1.1864112  0.07
2005 Nagarajan H, McCoy M, Lankarani HM. Design of HIC compliant aircraft bulkheads and cabin class divider panels International Journal of Crashworthiness. 10: 525-534. DOI: 10.1533/Ijcr.2005.0367  0.068
2015 Malshe H, Nagarajan H, Pan Y, Haapala K. Profile of sustainability in additive manufacturing and environmental assessment of a novel stereolithography process Asme 2015 International Manufacturing Science and Engineering Conference, Msec 2015. 2. DOI: 10.1115/MSEC20159371  0.067
2002 George S, Jha R, Nagarajan HK. The evolution and structure of the two-wheeler industry in India International Journal of Transport Economics. 29: 63-90.  0.061
2009 Deininger K, Jin S, Nagarajan HK. Land reforms, poverty reduction, and economic growth: Evidence from India Journal of Development Studies. 45: 496-521. DOI: 10.1080/00220380902725670  0.059
2013 Nagarajan H, Nachiappan A. Performance analysis of discrete wavelet transform based multiple input multiple output orthogonal frequency division multiplexing system for different wavelets in different channel environment American Journal of Applied Sciences. 10: 1521-1528. DOI: 10.3844/ajassp.2013.1521.1528  0.057
2011 Nagarajan H, Nakshatrala KB. Enforcing the non-negativity constraint and maximum principles for diffusion with decay on general computational grids International Journal For Numerical Methods in Fluids. 67: 820-847. DOI: 10.1002/Fld.2389  0.047
2015 Deininger K, Jin S, Nagarajan HK, Xia F. Does Female Reservation Affect Long-Term Political Outcomes? Evidence from Rural India Journal of Development Studies. 51: 32-49. DOI: 10.1080/00220388.2014.947279  0.045
2009 Deininger K, Jin S, Nagarajan HK. Determinants and Consequences of Land Sales Market Participation: Panel Evidence from India World Development. 37: 410-421. DOI: 10.1016/J.Worlddev.2008.06.004  0.042
2021 Rai R, Nagarajan H. COVID-19 Presenting as Enanthem and Itchy Exanthem. The Journal of the Association of Physicians of India. 69: 11-12. PMID 34470202  0.04
2023 Nagarajan H, Mahadevan K, Rai R, Boppe A. Evaluation of ELISA BP180 and BP230 Autoantibodies in Blister Fluid and Serum in the Diagnosis of Bullous Pemphigoid. Indian Journal of Dermatology. 68: 122. PMID 37151247 DOI: 10.4103/ijd.ijd_248_22  0.037
2005 Gangadurai M, Sreekumar B, Nagarajan H. Development of control strategy for optimal control of a continuously variable transmission operating in combination with a throttle controlled engine Sae Technical Papers.  0.035
2013 Deininger K, Jin S, Nagarajan H. Wage Discrimination in India's Informal Labor Markets: Exploring the Impact of Caste and Gender Review of Development Economics. 17: 130-147. DOI: 10.1111/Rode.12020  0.031
1979 Mallanna C, Nagarajan HN, Visveswaran ME. PROCESS PARAMETERS IN FLOW FORMING (DRAWING TYPE TUBE SPINNING) AND HOW THEY AFFECT THE END PRODUCT. Proceedings of the Japan Congress On Materials Research. 229-242.  0.031
1981 Nagarajan HN, Kotrappa H, Mallanna C, Venkatesh VC. Mechanics of Flow Forming Cirp Annals - Manufacturing Technology. 30: 159-162. DOI: 10.1016/S0007-8506(07)60915-9  0.03
1999 Jha R, Murthy KVB, Nagarajan HK, Seth A. Components of the wholesale bid-ask spread and the structure of grain markets: The case of rice in India Agricultural Economics. 21: 173-189. DOI: 10.1016/S0169-5150(99)00016-X  0.028
2009 Nagarajan HN, Massa L, Lu FK. DNS of detonation wave and isotropic turbulence interaction 19th Aiaa Computational Fluid Dynamics Conference.  0.026
2013 Deininger K, Goyal A, Nagarajan H. Women's inheritance rights and intergenerational transmission of resources in India Journal of Human Resources. 48: 114-141.  0.025
2012 Nagarajan H, Rathinam S, Darbha S, Rajagopal K. Algorithms for finding diameter-constrained graphs with maximum algebraic connectivity Springer Proceedings in Mathematics and Statistics. 20: 121-135. DOI: 10.1007/978-1-4614-3906-6_6  0.024
2000 Jha R, Nagarajan HK. The structure and price efficiency of an emerging market1 International Journal of Commerce and Management. 10: 50-59.  0.023
2020 Nagarajan H, Rai R. Contact dermatitis to minoxidil. Contact Dermatitis. PMID 32700369 DOI: 10.1111/cod.13670  0.01
2006 Zaouk A, Kasturi S, Punwani SK, Nagarajan H. Development of airbags for locomotive crew protection Asme/Ieee 2006 Joint Rail Conference, Jrc2006. 115-120.  0.01
2005 Kasturi S, Nagarajan H, Galea AM, Punwani SK. Injury mitigation in locomotive crashworthiness American Society of Mechanical Engineers, Rail Transportation Division (Publication) Rtd. 29: 1-8. DOI: 10.1115/RTD2005-70006  0.01
2002 Jha R, Nagarajan HK. Wholesale spreads and the dynamics of retail price volatility in Indian rice markets Applied Economics Letters. 9: 387-390. DOI: 10.1080/13504850110086026  0.01
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