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Matthew F. Calabrese, Ph.D. - Publications

Affiliations: 
Yale University, New Haven, CT 
Area:
Protein Folding and Dynamics, Structural Biology
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16 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Ryder T, Calabrese MF, Walker GS, Cameron KO, Reyes AR, Borzilleri KA, Delmore J, Miller RA, Kurumbail RG, Ward J, Kung DW, Brown JA, Edmonds DJ, Eng H, Wolford AC, et al. Acyl Glucuronide Metabolites of 6-Chloro-5-[4-(1-hydroxycyclobutyl)phenyl]-1H-indole-3-carboxylic Acid (PF-06409577) and Related Indole-3-carboxylic Acid Derivatives are Direct Activators of Adenosine Monophosphate-activated Protein Kinase (AMPK). Journal of Medicinal Chemistry. PMID 30036059 DOI: 10.1021/Acs.Jmedchem.8B00807  0.315
2018 Zorba A, Nguyen C, Xu Y, Starr J, Borzilleri K, Smith J, Zhu H, Farley KA, Ding W, Schiemer J, Feng X, Chang JS, Uccello DP, Young JA, Garcia-Irrizary CN, ... ... Calabrese MF, et al. Delineating the role of cooperativity in the design of potent PROTACs for BTK. Proceedings of the National Academy of Sciences of the United States of America. PMID 30012605 DOI: 10.1073/Pnas.1803662115  0.349
2018 Kurumbail RG, West GM, Dharmarajan V, Borzilleri KA, Withka JM, Ward J, Reyes AR, Rajamohan F, Griffin PR, Calabrese MF. Biophysical Interactions of Direct AMPK Activators. Methods in Molecular Biology (Clifton, N.J.). 1732: 29-55. PMID 29480467 DOI: 10.1007/978-1-4939-7598-3_3  0.358
2017 Salatto CT, Miller RA, Cameron KO, Cokorinos E, Reyes A, Ward J, Calabrese M, Kurumbail R, Rajamohan F, Kalgutkar AS, Tess DA, Shavnya A, Genung NE, Edmonds DJ, Jatkar A, et al. Selective Activation of AMPK b1-containing Isoforms Improves Kidney Function in a Rat Model of Diabetic Nephropathy. The Journal of Pharmacology and Experimental Therapeutics. PMID 28289077 DOI: 10.1124/Jpet.116.237925  0.309
2016 Kurumbail RG, Calabrese MF. Structure and Regulation of AMPK. Exs. 107: 3-22. PMID 27812974 DOI: 10.1007/978-3-319-43589-3_1  0.36
2016 Cameron KO, Kung DW, Kalgutkar AS, Kurumbail RG, Miller R, Salatto CT, Ward J, Withka JM, Bhattacharya SK, Boehm M, Borzilleri KA, Brown JA, Calabrese M, Caspers NL, Cokorinos E, et al. Discovery and Preclinical Characterization of 6-Chloro-5-[4-(1-hydroxycyclobutyl)phenyl]-1H-indole-3-carboxylic Acid (PF-06409577), a Direct Activator of Adenosine Monophosphate-activated Protein Kinase (AMPK), for the Potential Treatment of Diabetic Nephropathy. Journal of Medicinal Chemistry. PMID 27490827 DOI: 10.1021/Acs.Jmedchem.6B00866  0.301
2015 Rajamohan F, Reyes AR, Frisbie RK, Hoth LR, Sahasrabudhe P, Magyar R, Landro JA, Withka JM, Caspers NL, Calabrese MF, Ward J, Kurumbail RG. Probing the Enzyme Kinetics, Allosteric Modulation and Activation of Alpha-1 and Alpha-2 Subunit Containing AMP-activated Protein Kinase (AMPK) Heterotrimeric Complexes by Pharmacological and Physiological Activators. The Biochemical Journal. PMID 26635351 DOI: 10.1042/Bj20151051  0.314
2014 Calabrese MF, Rajamohan F, Harris MS, Caspers NL, Magyar R, Withka JM, Wang H, Borzilleri KA, Sahasrabudhe PV, Hoth LR, Geoghegan KF, Han S, Brown J, Subashi TA, Reyes AR, et al. Structural basis for AMPK activation: natural and synthetic ligands regulate kinase activity from opposite poles by different molecular mechanisms. Structure (London, England : 1993). 22: 1161-72. PMID 25066137 DOI: 10.1016/J.Str.2014.06.009  0.367
2013 Landgraf RR, Goswami D, Rajamohan F, Harris MS, Calabrese MF, Hoth LR, Magyar R, Pascal BD, Chalmers MJ, Busby SA, Kurumbail RG, Griffin PR. Activation of AMP-activated protein kinase revealed by hydrogen/deuterium exchange mass spectrometry. Structure (London, England : 1993). 21: 1942-53. PMID 24076403 DOI: 10.1016/J.Str.2013.08.023  0.348
2011 Duda DM, Scott DC, Calabrese MF, Zimmerman ES, Zheng N, Schulman BA. Structural regulation of cullin-RING ubiquitin ligase complexes. Current Opinion in Structural Biology. 21: 257-64. PMID 21288713 DOI: 10.1016/J.Sbi.2011.01.003  0.329
2011 Schulman BA, Duda DM, Kamadurai HB, Souphron J, Scott DC, Monda JK, Olszewski J, Calabrese MF. Structural Studies of Ubiquitin and Ubiquitin-Like Protein Transfer Cascades Biophysical Journal. 100: 372a. DOI: 10.1016/J.Bpj.2010.12.2213  0.333
2010 Wolfe LS, Calabrese MF, Nath A, Blaho DV, Miranker AD, Xiong Y. Protein-induced photophysical changes to the amyloid indicator dye thioflavin T. Proceedings of the National Academy of Sciences of the United States of America. 107: 16863-8. PMID 20826442 DOI: 10.1073/Pnas.1002867107  0.483
2009 Zhuang M, Calabrese MF, Liu J, Waddell MB, Nourse A, Hammel M, Miller DJ, Walden H, Duda DM, Seyedin SN, Hoggard T, Harper JW, White KP, Schulman BA. Structures of SPOP-substrate complexes: insights into molecular architectures of BTB-Cul3 ubiquitin ligases. Molecular Cell. 36: 39-50. PMID 19818708 DOI: 10.1016/J.Molcel.2009.09.022  0.386
2009 Calabrese MF, Miranker AD. Metal binding sheds light on mechanisms of amyloid assembly. Prion. 3: 1-4. PMID 19377278 DOI: 10.4161/Pri.3.1.8601  0.648
2008 Calabrese MF, Eakin CM, Wang JM, Miranker AD. A regulatable switch mediates self-association in an immunoglobulin fold. Nature Structural & Molecular Biology. 15: 965-71. PMID 19172750 DOI: 10.1038/Nsmb.1483  0.674
2007 Calabrese MF, Miranker AD. Formation of a stable oligomer of beta-2 microglobulin requires only transient encounter with Cu(II). Journal of Molecular Biology. 367: 1-7. PMID 17254602 DOI: 10.1016/J.Jmb.2006.12.034  0.643
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