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Ruben E. Valas, Ph.D. - Publications

Affiliations: 
2010 Bioinformatics University of California, San Diego, La Jolla, CA 
Area:
chemotactic motility in developed Dictyostelium
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15 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Mock T, Otillar RP, Strauss J, McMullan M, Paajanen P, Schmutz J, Salamov A, Sanges R, Toseland A, Ward BJ, Allen AE, Dupont CL, Frickenhaus S, Maumus F, Veluchamy A, ... ... Valas RE, et al. Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus. Nature. 1-5. PMID 28092920 DOI: 10.1038/Nature20803  0.353
2015 Karas BJ, Diner RE, Lefebvre SC, McQuaid J, Phillips AP, Noddings CM, Brunson JK, Valas RE, Deerinck TJ, Jablanovic J, Gillard JT, Beeri K, Ellisman MH, Glass JI, Hutchison CA, et al. Designer diatom episomes delivered by bacterial conjugation. Nature Communications. 6: 6925. PMID 25897682 DOI: 10.1038/Ncomms7925  0.327
2015 Dupont CL, McCrow JP, Valas R, Moustafa A, Walworth N, Goodenough U, Roth R, Hogle SL, Bai J, Johnson ZI, Mann E, Palenik B, Barbeau KA, Venter JC, Allen AE. Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities. The Isme Journal. 9: 1076-92. PMID 25333462 DOI: 10.1038/Ismej.2014.198  0.352
2013 Konotchick T, Dupont CL, Valas RE, Badger JH, Allen AE. Transcriptomic analysis of metabolic function in the giant kelp, Macrocystis pyrifera, across depth and season. The New Phytologist. 198: 398-407. PMID 23488966 DOI: 10.1111/Nph.12160  0.326
2012 Ghai R, Hernandez CM, Picazo A, Mizuno CM, Ininbergs K, Díez B, Valas R, DuPont CL, McMahon KD, Camacho A, Rodriguez-Valera F. Metagenomes of Mediterranean coastal lagoons. Scientific Reports. 2: 490. PMID 22778901 DOI: 10.1038/Srep00490  0.34
2012 Bertrand EM, Allen AE, Dupont CL, Norden-Krichmar TM, Bai J, Valas RE, Saito MA. Influence of cobalamin scarcity on diatom molecular physiology and identification of a cobalamin acquisition protein. Proceedings of the National Academy of Sciences of the United States of America. 109: E1762-71. PMID 22652568 DOI: 10.1073/Pnas.1201731109  0.347
2012 Dupont CL, Rusch DB, Yooseph S, Lombardo MJ, Richter RA, Valas R, Novotny M, Yee-Greenbaum J, Selengut JD, Haft DH, Halpern AL, Lasken RS, Nealson K, Friedman R, Venter JC. Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage. The Isme Journal. 6: 1186-99. PMID 22170421 DOI: 10.1038/Ismej.2011.189  0.37
2011 Valas RE, Bourne PE. The origin of a derived superkingdom: how a gram-positive bacterium crossed the desert to become an archaeon. Biology Direct. 6: 16. PMID 21356104 DOI: 10.1186/1745-6150-6-16  0.326
2010 Valas RE, Bourne PE. Save the tree of life or get lost in the woods. Biology Direct. 5: 44. PMID 20594329 DOI: 10.1186/1745-6150-5-44  0.38
2010 Dupont CL, Butcher A, Valas RE, Bourne PE, Caetano-Anollés G. History of biological metal utilization inferred through phylogenomic analysis of protein structures. Proceedings of the National Academy of Sciences of the United States of America. 107: 10567-72. PMID 20498051 DOI: 10.1073/Pnas.0912491107  0.33
2009 Valas RE, Bourne PE. Structural analysis of polarizing indels: an emerging consensus on the root of the tree of life. Biology Direct. 4: 30. PMID 19706177 DOI: 10.1186/1745-6150-4-30  0.326
2009 Valas RE, Yang S, Bourne PE. Nothing about protein structure classification makes sense except in the light of evolution. Current Opinion in Structural Biology. 19: 329-34. PMID 19394812 DOI: 10.1016/J.Sbi.2009.03.011  0.339
2009 Veretnik S, Wills C, Youkharibache P, Valas RE, Bourne PE. Sm/Lsm genes provide a glimpse into the early evolution of the spliceosome. Plos Computational Biology. 5: e1000315. PMID 19282982 DOI: 10.1371/Journal.Pcbi.1000315  0.363
2009 Valas RE, Bourne PE. Structural Analysis of Polarizing Indels Argues the Root of the Tree of Life is Near the Chloroflexi Nature Precedings. DOI: 10.1038/Npre.2009.3290.1  0.311
2008 Valas RE, Bourne PE. Rethinking proteasome evolution: two novel bacterial proteasomes. Journal of Molecular Evolution. 66: 494-504. PMID 18389302 DOI: 10.1007/S00239-008-9075-7  0.392
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