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Gerald Quon, Ph.D. - Publications

Affiliations: 
2012 University of Toronto, Toronto, ON, Canada 
Area:
Computational biology
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26/43 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Kern C, Wang Y, Xu X, Pan Z, Halstead M, Chanthavixay G, Saelao P, Waters S, Xiang R, Chamberlain A, Korf I, Delany ME, Cheng HH, Medrano JF, Van Eenennaam AL, ... ... Quon G, et al. Functional annotations of three domestic animal genomes provide vital resources for comparative and agricultural research. Nature Communications. 12: 1821. PMID 33758196 DOI: 10.1038/s41467-021-22100-8  0.32
2020 Davies AE, Pargett M, Siebert S, Gillies TE, Choi Y, Tobin SJ, Ram AR, Murthy V, Juliano C, Quon G, Bissell MJ, Albeck JG. Systems-Level Properties of EGFR-RAS-ERK Signaling Amplify Local Signals to Generate Dynamic Gene Expression Heterogeneity. Cell Systems. PMID 32726596 DOI: 10.1016/J.Cels.2020.07.004  0.329
2020 Feizi S, Quon G, Recamonde-Mendoza M, Medard M, Kellis M, Jadbabaie A. Spectral Alignment of Graphs Ieee Transactions On Network Science and Engineering. 7: 1182-1197. DOI: 10.1109/Tnse.2019.2913233  0.706
2019 Li R, Quon G. scBFA: modeling detection patterns to mitigate technical noise in large-scale single-cell genomics data. Genome Biology. 20: 193. PMID 31500668 DOI: 10.1186/S13059-019-1806-0  0.319
2019 Hodge RD, Bakken TE, Miller JA, Smith KA, Barkan ER, Graybuck LT, Close JL, Long B, Johansen N, Penn O, Yao Z, Eggermont J, Höllt T, Levi BP, Shehata SI, ... ... Quon G, et al. Conserved cell types with divergent features in human versus mouse cortex. Nature. PMID 31435019 DOI: 10.1038/S41586-019-1506-7  0.43
2019 Johansen N, Quon G. scAlign: a tool for alignment, integration, and rare cell identification from scRNA-seq data. Genome Biology. 20: 166. PMID 31412909 DOI: 10.1186/S13059-019-1766-4  0.376
2019 Feizi S, Medard M, Quon G, Kellis M, Duffy K. Network Infusion to Infer Information Sources in Networks Ieee Transactions On Network Science and Engineering. 6: 402-417. DOI: 10.1109/Tnse.2018.2854218  0.717
2016 Cui A, Quon G, Rosenberg AM, Yeung RS, Morris Q. Gene Expression Deconvolution for Uncovering Molecular Signatures in Response to Therapy in Juvenile Idiopathic Arthritis. Plos One. 11: e0156055. PMID 27244050 DOI: 10.1371/Journal.Pone.0156055  0.61
2016 Marbach D, Lamparter D, Quon G, Kellis M, Kutalik Z, Bergmann S. Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases. Nature Methods. PMID 26950747 DOI: 10.1038/Nmeth.3799  0.803
2016 Batmanghelich N, Dalca A, Quon G, Sabuncu M, Golland P. Probabilistic Modeling of Imaging, Genetics and Diagnosis. Ieee Transactions On Medical Imaging. PMID 26886973 DOI: 10.1109/Tmi.2016.2527784  0.354
2015 Claussnitzer M, Dankel SN, Kim KH, Quon G, Meuleman W, Haugen C, Glunk V, Sousa IS, Beaudry JL, Puviindran V, Abdennur NA, Liu J, Svensson PA, Hsu YH, Drucker DJ, et al. FTO Obesity Variant Circuitry and Adipocyte Browning in Humans. The New England Journal of Medicine. 373: 895-907. PMID 26287746 DOI: 10.1056/Nejmoa1502214  0.759
2015 Anghel CV, Quon G, Haider S, Nguyen F, Deshwar AG, Morris QD, Boutros PC. ISOpureR: an R implementation of a computational purification algorithm of mixed tumour profiles. Bmc Bioinformatics. 16: 156. PMID 25972088 DOI: 10.1186/S12859-015-0597-X  0.547
2015 Gjoneska E, Pfenning AR, Mathys H, Quon G, Kundaje A, Tsai LH, Kellis M. Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer's disease. Nature. 518: 365-9. PMID 25693568 DOI: 10.1038/Nature14252  0.728
2015 Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, Kheradpour P, Zhang Z, Wang J, Ziller MJ, Amin V, Whitaker JW, Schultz MD, Ward LD, ... ... Quon G, et al. Integrative analysis of 111 reference human epigenomes. Nature. 518: 317-30. PMID 25693563 DOI: 10.1038/Nature14248  0.425
2015 Anghel CV, Quon G, Haider S, Nguyen F, Deshwar AG, Morris QD, Boutros PC. ISOpureR: An R implementation of a computational purification algorithm of mixed tumour profiles Bmc Bioinformatics. DOI: 10.1186/s12859-015-0597-x  0.442
2013 Lippert C, Quon G, Kang EY, Kadie CM, Listgarten J, Heckerman D. The benefits of selecting phenotype-specific variants for applications of mixed models in genomics. Scientific Reports. 3: 1815. PMID 23657357 DOI: 10.1038/Srep01815  0.372
2013 Quon G, Haider S, Deshwar AG, Cui A, Boutros PC, Morris Q. Computational purification of individual tumor gene expression profiles leads to significant improvements in prognostic prediction. Genome Medicine. 5: 29. PMID 23537167 DOI: 10.1186/Gm433  0.566
2013 Quon G, Lippert C, Heckerman D, Listgarten J. Patterns of methylation heritability in a genome-wide analysis of four brain regions. Nucleic Acids Research. 41: 2095-104. PMID 23303775 DOI: 10.1093/Nar/Gks1449  0.433
2012 Qiao W, Quon G, Csaszar E, Yu M, Morris Q, Zandstra PW. PERT: a method for expression deconvolution of human blood samples from varied microenvironmental and developmental conditions. Plos Computational Biology. 8: e1002838. PMID 23284283 DOI: 10.1371/journal.pcbi.1002838  0.553
2011 Goldenberg A, Mostafavi S, Quon G, Boutros PC, Morris QD. Unsupervised detection of genes of influence in lung cancer using biological networks. Bioinformatics (Oxford, England). 27: 3166-72. PMID 21965819 DOI: 10.1093/Bioinformatics/Btr533  0.678
2011 Deshwar A, Quon G, Morris Q. Computational purification of tumor gene expression data Bmc Bioinformatics. 12. DOI: 10.1186/1471-2105-12-S11-A9  0.505
2011 Quon G, Haider S, Boutros PC, Morris QD. Abstract 4847: Purifying tumor gene expression profiles leads to predictive models of patient outcome Cancer Research. 71: 4847-4847. DOI: 10.1158/1538-7445.Am2011-4847  0.558
2010 Li X, Quon G, Lipshitz HD, Morris Q. Predicting in vivo binding sites of RNA-binding proteins using mRNA secondary structure. Rna (New York, N.Y.). 16: 1096-107. PMID 20418358 DOI: 10.1261/Rna.2017210  0.523
2009 Quon G, Morris Q. ISOLATE: a computational strategy for identifying the primary origin of cancers using high-throughput sequencing. Bioinformatics (Oxford, England). 25: 2882-9. PMID 19542156 DOI: 10.1093/bioinformatics/btp378  0.524
2009 Chan ET, Quon GT, Chua G, Babak T, Trochesset M, Zirngibl RA, Aubin J, Ratcliffe MJ, Wilde A, Brudno M, Morris QD, Hughes TR. Conservation of core gene expression in vertebrate tissues. Journal of Biology. 8: 33. PMID 19371447 DOI: 10.1186/Jbiol130  0.592
2009 Quon G, Teh YW, Chan E, Hughes T, Brudno M, Morris Q. A mixture model for the evolution of gene expression in non-homogeneous datasets Advances in Neural Information Processing Systems 21 - Proceedings of the 2008 Conference. 1297-1304.  0.52
Low-probability matches (unlikely to be authored by this person)
2023 Choi Y, Li R, Quon G. siVAE: interpretable deep generative models for single-cell transcriptomes. Genome Biology. 24: 29. PMID 36803416 DOI: 10.1186/s13059-023-02850-y  0.284
2019 Li R, Quon G. Correction to: scBFA: modeling detection patterns to mitigate technical noise in large-scale single-cell genomics data. Genome Biology. 20: 247. PMID 31752962 DOI: 10.1186/S13059-019-1822-0  0.277
2005 Thiruv B, Quon G, Saldanha SA, Steipe B. Nh3D: a reference dataset of non-homologous protein structures. Bmc Structural Biology. 5: 12. PMID 16011803 DOI: 10.1186/1472-6807-5-12  0.243
2017 Ramani VC, Gupta R, Quon G, Triboulet M, Renier C, Greene C, Sanada C, Lu T, Szpankowski L, Ramalingam N, Salahudeen AA, O Sdl, Rajapaksa R, Levy S, Leyrat AA, et al. Abstract 1847: Evaluating the metastatic potential and the molecular heterogeneity of patient-derived orthotopic xenograft models of triple-negative breast cancer Cancer Research. 77: 1847-1847. DOI: 10.1158/1538-7445.Am2017-1847  0.226
2018 Li J, Tan W, Xiao W, Carney RP, Men Y, Li Y, Quon G, Ajena Y, Lam KS, Pan T. A plug-and-play, drug-on-pillar platform for combination drug screening implemented by microfluidic adaptive printing. Analytical Chemistry. PMID 30358386 DOI: 10.1021/Acs.Analchem.8B03456  0.2
2023 Johansen N, Hu H, Quon G. Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection. Nature Communications. 14: 5192. PMID 37626024 DOI: 10.1038/s41467-023-40744-6  0.194
2021 Chandrasekaran S, Danos N, George UZ, Han JP, Quon G, Müller R, Tsang Y, Wolgemuth C. The Axes of Life: A roadmap for understanding dynamic multiscale systems. Integrative and Comparative Biology. PMID 34048574 DOI: 10.1093/icb/icab114  0.18
2022 Zhu T, Brown AP, Cai LP, Quon G, Ji H. Single-Cell RNA-Seq Analysis Reveals Lung Epithelial Cell Type-Specific Responses to HDM and Regulation by Tet1. Genes. 13. PMID 35627266 DOI: 10.3390/genes13050880  0.153
2004 Shah SP, He DY, Sawkins JN, Druce JC, Quon G, Lett D, Zheng GX, Xu T, Ouellette BF. Pegasys: software for executing and integrating analyses of biological sequences. Bmc Bioinformatics. 5: 40. PMID 15096276 DOI: 10.1186/1471-2105-5-40  0.149
2024 Liao C, Wang L, Quon G. Microbiome-based classification models for fresh produce safety and quality evaluation. Microbiology Spectrum. e0344823. PMID 38445872 DOI: 10.1128/spectrum.03448-23  0.148
2024 Ram A, Pargett M, Choi Y, Murphy D, Cabel M, Kosaisawe N, Quon G, Albeck J. Deciphering the History of ERK Activity from Fixed-Cell Immunofluorescence Measurements. Biorxiv : the Preprint Server For Biology. PMID 38405841 DOI: 10.1101/2024.02.16.580760  0.139
2003 Quon GT, Gordon P, Sensen CW. 4D bioinformatics: a new look at the ribosome as an example. Iubmb Life. 55: 279-83. PMID 12880210 DOI: 10.1080/1521654031000136255  0.129
2023 Adler FR, Anderson ARA, Bhushan A, Bogdan P, Bravo-Cordero JJ, Brock A, Chen Y, Cukierman E, DelGiorno KE, Denis GV, Ferrall-Fairbanks MC, Gartner ZJ, Germain RN, Gordon DM, Hunter G, ... ... Quon G, et al. Modeling collective cell behavior in cancer: Perspectives from an interdisciplinary conversation. Cell Systems. 14: 252-257. PMID 37080161 DOI: 10.1016/j.cels.2023.03.002  0.114
2001 DeTitta GT, Bianca MA, Collins RJ, Faust AME, Kaczmarek JN, Luft JR, Fehrman NA, Pangborn WA, Salerno JM, Wolfley JR, Jurisica I, Rogers P, Quon G, Glasgow J, Fortier S. Macromolecular crystallization in a high throughput setting 2001 Conference and Exhibit On International Space Station Utilization.  0.029
2015 Musallam M, Quon G. A rare cause of hearing loss in a child. Jaapa : Official Journal of the American Academy of Physician Assistants. 28: 32-7. PMID 25802938 DOI: 10.1097/01.JAA.0000459814.17285.64  0.025
1993 Stapleton SP, Quon GS. Cellular base station phased array antenna system Ieee Vehicular Technology Conference. 93-96.  0.024
2005 Stromer JN, Quon GT, Gordon PM, Turinsky AL, Sensen CW. Jabiru: harnessing Java 3D behaviors for device and display portability. Ieee Computer Graphics and Applications. 25: 70-80. PMID 15794151 DOI: 10.1109/MCG.2005.42  0.013
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