Sara Mostafavi, Ph.D. - Publications

Affiliations: 
2011 Computer Science University of Toronto, Toronto, ON, Canada 
Area:
Computational biology

40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Aristizabal MJ, Anreiter I, Halldorsdottir T, Odgers CL, McDade TW, Goldenberg A, Mostafavi S, Kobor MS, Binder EB, Sokolowski MB, O'Donnell KJ. Biological embedding of experience: A primer on epigenetics. Proceedings of the National Academy of Sciences of the United States of America. PMID 31624126 DOI: 10.1073/pnas.1820838116  0.52
2016 Kukurba KR, Parsana P, Balliu B, Smith KS, Zappala Z, Knowles DA, Favé MJ, Davis JR, Li X, Zhu X, Potash JB, Weissman MM, Shi J, Kundaje A, Levinson DF, ... ... Mostafavi S, et al. Impact of the X Chromosome and sex on regulatory variation. Genome Research. PMID 27197214 DOI: 10.1101/gr.197897.115  1
2016 Mostafavi S, Yoshida H, Moodley D, LeBoité H, Rothamel K, Raj T, Ye CJ, Chevrier N, Zhang SY, Feng T, Lee M, Casanova JL, Clark JD, Hegen M, Telliez JB, et al. Parsing the Interferon Transcriptional Network and Its Disease Associations. Cell. 164: 564-578. PMID 26824662 DOI: 10.1016/j.cell.2015.12.032  1
2015 Carithers LJ, Ardlie K, Barcus M, Branton PA, Britton A, Buia SA, Compton CC, DeLuca DS, Peter-Demchok J, Gelfand ET, Guan P, Korzeniewski GE, Lockhart NC, Rabiner CA, Rao AK, et al. A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project. Biopreservation and Biobanking. 13: 311-9. PMID 26484571 DOI: 10.1089/bio.2015.0032  1
2015 Yang J, Huang T, Petralia F, Long Q, Zhang B, Argmann C, Zhao Y, Mobbs CV, Schadt EE, Zhu J, Tu Z. Synchronized age-related gene expression changes across multiple tissues in human and the link to complex diseases. Scientific Reports. 5: 15145. PMID 26477495 DOI: 10.1038/srep15145  1
2015 Pierson E, Koller D, Battle A, Mostafavi S, Ardlie KG, Getz G, Wright FA, Kellis M, Volpi S, Dermitzakis ET. Sharing and Specificity of Co-expression Networks across 35 Human Tissues. Plos Computational Biology. 11: e1004220. PMID 25970446 DOI: 10.1371/journal.pcbi.1004220  1
2015 Holm A, Lin L, Faraco J, Mostafavi S, Battle A, Zhu X, Levinson DF, Han F, Gammeltoft S, Jennum P, Mignot E, Kornum BR. EIF3G is associated with narcolepsy across ethnicities. European Journal of Human Genetics : Ejhg. PMID 25669430 DOI: 10.1038/ejhg.2015.4  1
2015 Ardlie KG, DeLuca DS, Segrè AV, Sullivan TJ, Young TR, Gelfand ET, Trowbridge CA, Maller JB, Tukiainen T, Lek M, Ward LD, Kheradpour P, Iriarte B, Meng Y, Palmer CD, ... ... Mostafavi S, et al. The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans Science. 348: 648-660. DOI: 10.1126/science.1262110  1
2014 Mostafavi S, Ortiz-Lopez A, Bogue MA, Hattori K, Pop C, Koller D, Mathis D, Benoist C. Variation and genetic control of gene expression in primary immunocytes across inbred mouse strains. Journal of Immunology (Baltimore, Md. : 1950). 193: 4485-96. PMID 25267973 DOI: 10.4049/jimmunol.1401280  1
2014 Levinson DF, Mostafavi S, Milaneschi Y, Rivera M, Ripke S, Wray NR, Sullivan PF. Genetic studies of major depressive disorder: why are there no genome-wide association study findings and what can we do about it? Biological Psychiatry. 76: 510-2. PMID 25201436 DOI: 10.1016/j.biopsych.2014.07.029  1
2014 Nance T, Smith KS, Anaya V, Richardson R, Ho L, Pala M, Mostafavi S, Battle A, Feghali-Bostwick C, Rosen G, Montgomery SB. Transcriptome analysis reveals differential splicing events in IPF lung tissue. Plos One. 9: e97550. PMID 24805851 DOI: 10.1371/journal.pone.0097550  1
2014 Raj T, Rothamel K, Mostafavi S, Ye C, Lee MN, Replogle JM, Feng T, Lee M, Asinovski N, Frohlich I, Imboywa S, Von Korff A, Okada Y, Patsopoulos NA, Davis S, et al. Polarization of the effects of autoimmune and neurodegenerative risk alleles in leukocytes. Science (New York, N.Y.). 344: 519-23. PMID 24786080 DOI: 10.1126/science.1249547  1
2014 Davies MN, Krause L, Bell JT, Gao F, Ward KJ, Wu H, Lu H, Liu Y, Tsai PC, Collier DA, Murphy T, Dempster E, Mill J, Battle A, ... Mostafavi S, et al. Hypermethylation in the ZBTB20 gene is associated with major depressive disorder. Genome Biology. 15: R56. PMID 24694013 DOI: 10.1186/gb-2014-15-4-r56  1
2014 Nance T, Smith KS, Anaya V, Richardson R, Ho L, Pala M, Mostafavi S, Battle A, Feghali-Bostwick C, Rosen G, Montgomery SB. Transcriptome analysis reveals differential splicing events in IPF lung tissue. Plos One. 9: e92111. PMID 24647608 DOI: 10.1371/journal.pone.0092111  1
2014 Mostafavi S, Battle A, Zhu X, Potash JB, Weissman MM, Shi J, Beckman K, Haudenschild C, McCormick C, Mei R, Gameroff MJ, Gindes H, Adams P, Goes FS, Mondimore FM, et al. Type I interferon signaling genes in recurrent major depression: increased expression detected by whole-blood RNA sequencing. Molecular Psychiatry. 19: 1267-74. PMID 24296977 DOI: 10.1038/mp.2013.161  1
2014 Battle A, Mostafavi S, Zhu X, Potash JB, Weissman MM, McCormick C, Haudenschild CD, Beckman KB, Shi J, Mei R, Urban AE, Montgomery SB, Levinson DF, Koller D. Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals. Genome Research. 24: 14-24. PMID 24092820 DOI: 10.1101/gr.155192.113  1
2013 Mostafavi S, Battle A, Zhu X, Urban AE, Levinson D, Montgomery SB, Koller D. Normalizing RNA-sequencing data by modeling hidden covariates with prior knowledge. Plos One. 8: e68141. PMID 23874524 DOI: 10.1371/journal.pone.0068141  1
2013 Lonsdale J, Thomas J, Salvatore M, Phillips R, Lo E, Shad S, Hasz R, Walters G, Garcia F, Young N, Foster B, Moser M, Karasik E, Gillard B, Ramsey K, ... ... Mostafavi S, et al. The Genotype-Tissue Expression (GTEx) project Nature Genetics. 45: 580-585. PMID 23715323 DOI: 10.1038/ng.2653  1
2012 Mostafavi S, Goldenberg A, Morris Q. Labeling nodes using three degrees of propagation. Plos One. 7: e51947. PMID 23284828 DOI: 10.1371/journal.pone.0051947  1
2012 Mostafavi S, Morris Q. Combining many interaction networks to predict gene function and analyze gene lists. Proteomics. 12: 1687-96. PMID 22589215 DOI: 10.1002/pmic.201100607  1
2012 Mostafavi S, Amiri A. Extending fuzzy c-means to clustering data streams Icee 2012 - 20th Iranian Conference On Electrical Engineering. 726-729. DOI: 10.1109/IranianCEE.2012.6292449  1
2011 Goldenberg A, Mostafavi S, Quon G, Boutros PC, Morris QD. Unsupervised detection of genes of influence in lung cancer using biological networks. Bioinformatics (Oxford, England). 27: 3166-72. PMID 21965819 DOI: 10.1093/bioinformatics/btr533  1
2011 Mostafavi S, Goldenberg A, Morris Q. Predicting node characteristics from molecular networks. Methods in Molecular Biology (Clifton, N.J.). 781: 399-414. PMID 21877293 DOI: 10.1007/978-1-61779-276-2_20  1
2011 Schimmer BP, Tsao J, Cordova M, Mostafavi S, Morris Q, Scheys JO. Contributions of steroidogenic factor 1 to the transcription landscape of Y1 mouse adrenocortical tumor cells. Molecular and Cellular Endocrinology. 336: 85-91. PMID 21111771 DOI: 10.1016/j.mce.2010.11.024  1
2011 Mostafavi SM, Hamadani E, Kuehn R, Tafazolli R. Delay minimisation in multipath routing using intelligent traffic distribution policies Iet Communications. 5: 1405-1412. DOI: 10.1049/iet-com.2010.0721  1
2010 Warde-Farley D, Donaldson SL, Comes O, Zuberi K, Badrawi R, Chao P, Franz M, Grouios C, Kazi F, Lopes CT, Maitland A, Mostafavi S, Montojo J, Shao Q, Wright G, et al. The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function. Nucleic Acids Research. 38: W214-20. PMID 20576703 DOI: 10.1093/nar/gkq537  1
2010 Mostafavi S, Morris Q. Fast integration of heterogeneous data sources for predicting gene function with limited annotation. Bioinformatics (Oxford, England). 26: 1759-65. PMID 20507895 DOI: 10.1093/bioinformatics/btq262  1
2010 Costanzo M, Baryshnikova A, Bellay J, Kim Y, Spear ED, Sevier CS, Ding H, Koh JL, Toufighi K, Mostafavi S, Prinz J, St Onge RP, VanderSluis B, Makhnevych T, Vizeacoumar FJ, et al. The genetic landscape of a cell. Science (New York, N.Y.). 327: 425-31. PMID 20093466 DOI: 10.1126/science.1180823  1
2010 Mostafavi SM, Hamadani E, Tafazolli R. Delay minimization in multipath routing Iwcmc 2010 - Proceedings of the 6th International Wireless Communications and Mobile Computing Conference. 711-715. DOI: 10.1145/1815396.1815560  1
2010 Mostafavi SM, Hamadani E, Tafazzoli R. Maximum delay minimization in multipath routing Cnsr 2010 - Proceedings of the 8th Annual Conference On Communication Networks and Services Research. 310-314. DOI: 10.1109/CNSR.2010.49  1
2010 Knott S, Mostafavi S, Mousavi P. A neural network based modeling and validation approach for identifying gene regulatory networks Neurocomputing. 73: 2419-2429. DOI: 10.1016/j.neucom.2010.04.018  1
2009 Mostafavi S, Morris Q. Using the Gene Ontology hierarchy when predicting gene function Proceedings of the 25th Conference On Uncertainty in Artificial Intelligence, Uai 2009. 419-427.  1
2008 Mostafavi S, Ray D, Warde-Farley D, Grouios C, Morris Q. GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function. Genome Biology. 9: S4. PMID 18613948 DOI: 10.1186/gb-2008-9-s1-s4  1
2008 Peña-Castillo L, Tasan M, Myers CL, Lee H, Joshi T, Zhang C, Guan Y, Leone M, Pagnani A, Kim WK, Krumpelman C, Tian W, Obozinski G, Qi Y, Mostafavi S, et al. A critical assessment of Mus musculus gene function prediction using integrated genomic evidence. Genome Biology. 9: S2. PMID 18613946 DOI: 10.1186/gb-2008-9-s1-s2  1
2008 Hanzo L, Mostafavi SM, Tafazolli R. Connectivity-related properties of mobile nodes obeying the random walk and random waypoint mobility models Ieee Vehicular Technology Conference. 133-137. DOI: 10.1109/VETECS.2008.40  1
2008 Kühn R, Mostafavi SM. Optimal routing policy Ieee Communications Letters. 12: 222-224. DOI: 10.1109/LCOMM.2008.071777  1
2007 Otaegui D, Mostafavi S, Bernard CC, Lopez de Munain A, Mousavi P, Oksenberg JR, Baranzini SE. Increased transcriptional activity of milk-related genes following the active phase of experimental autoimmune encephalomyelitis and multiple sclerosis. Journal of Immunology (Baltimore, Md. : 1950). 179: 4074-82. PMID 17785846  1
2006 Knott S, Mostafavi S, Mousavi P. A neural network based approach for inference and verification of transcriptional regulatory interactions. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 5838-41. PMID 17946339 DOI: 10.1109/IEMBS.2006.259927  1
2006 Mostafavi S, Baranzini S, Oksernberg J, Mousavi P. Predictive modeling of therapy response in multiple sclerosis using gene expression data. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 5519-22. PMID 17946311 DOI: 10.1109/IEMBS.2006.259681  1
2006 Mostafavi S, Baranzini S, Oksenberg J, Mousavi P. A fast multivariate feature-selection/classification approach for prediction of therapy response in multiple sclerosis Proceedings of the 2006 Ieee Symposium On Computational Intelligence in Bioinformatics and Computational Biology, Cibcb'06. 312-319. DOI: 10.1109/CIBCB.2006.330952  1
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