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Stavros Lomvardas - Publications

Affiliations: 
University of California, San Francisco, San Francisco, CA 
Area:
Epigenetics
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36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Canzio D, Nwakeze CL, Horta A, Rajkumar SM, Coffey EL, Duffy EE, Duffié R, Monahan K, O'Keeffe S, Simon MD, Lomvardas S, Maniatis T. Antisense lncRNA Transcription Mediates DNA Demethylation to Drive Stochastic Protocadherin α Promoter Choice. Cell. PMID 30955885 DOI: 10.1016/j.cell.2019.03.008  0.32
2018 Weyn-Vanhentenryck SM, Feng H, Ustianenko D, Duffié R, Yan Q, Jacko M, Martinez JC, Goodwin M, Zhang X, Hengst U, Lomvardas S, Swanson MS, Zhang C. Precise temporal regulation of alternative splicing during neural development. Nature Communications. 9: 2189. PMID 29875359 DOI: 10.1038/s41467-018-04559-0  0.32
2016 Le Gros MA, Clowney EJ, Magklara A, Yen A, Markenscoff-Papadimitriou E, Colquitt B, Myllys M, Kellis M, Lomvardas S, Larabell CA. Soft X-Ray Tomography Reveals Gradual Chromatin Compaction and Reorganization during Neurogenesis In Vivo. Cell Reports. 17: 2125-2136. PMID 27851973 DOI: 10.1016/j.celrep.2016.10.060  0.68
2016 Dekker J, Guttman M, Lomvardas S. A Guide to Packing Your DNA Cell. 165: 259-261. DOI: 10.1016/j.cell.2016.03.039  0.68
2015 Guan Z, Kuhn JA, Wang X, Colquitt B, Solorzano C, Vaman S, Guan AK, Evans-Reinsch Z, Braz J, Devor M, Abboud-Werner SL, Lanier LL, Lomvardas S, Basbaum AI. Injured sensory neuron-derived CSF1 induces microglial proliferation and DAP12-dependent pain. Nature Neuroscience. PMID 26642091 DOI: 10.1038/nn.4189  0.68
2015 Gray JM, Kim TK, West AE, Nord AS, Markenscoff-Papadimitriou E, Lomvardas S. Genomic Views of Transcriptional Enhancers: Essential Determinants of Cellular Identity and Activity-Dependent Responses in the CNS. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 35: 13819-26. PMID 26468181 DOI: 10.1523/JNEUROSCI.2622-15.2015  0.68
2015 Monahan K, Lomvardas S. Monoallelic Expression of Olfactory Receptors. Annual Review of Cell and Developmental Biology. PMID 26359778 DOI: 10.1146/annurev-cellbio-100814-125308  0.68
2015 Dalton RP, Lomvardas S. Chemosensory receptor specificity and regulation. Annual Review of Neuroscience. 38: 331-49. PMID 25938729 DOI: 10.1146/annurev-neuro-071714-034145  0.68
2015 Chadwick LH, Sawa A, Yang IV, Baccarelli A, Breakefield XO, Deng HW, Dolinoy DC, Fallin MD, Holland NT, Houseman EA, Lomvardas S, Rao M, Satterlee JS, Tyson FL, Vijayanand P, et al. New insights and updated guidelines for epigenome-wide association studies Neuroepigenetics. 1: 14-19. DOI: 10.1016/j.nepig.2014.10.004  0.68
2014 Lyons DB, Magklara A, Goh T, Sampath SC, Schaefer A, Schotta G, Lomvardas S. Heterochromatin-mediated gene silencing facilitates the diversification of olfactory neurons. Cell Reports. 9: 884-92. PMID 25437545 DOI: 10.1016/j.celrep.2014.10.001  0.68
2014 Markenscoff-Papadimitriou E, Allen WE, Colquitt BM, Goh T, Murphy KK, Monahan K, Mosley CP, Ahituv N, Lomvardas S. Enhancer interaction networks as a means for singular olfactory receptor expression. Cell. 159: 543-57. PMID 25417106 DOI: 10.1016/j.cell.2014.09.033  0.68
2014 Colquitt BM, Markenscoff-Papadimitriou E, Duffié R, Lomvardas S. Dnmt3a regulates global gene expression in olfactory sensory neurons and enables odorant-induced transcription. Neuron. 83: 823-38. PMID 25123312 DOI: 10.1016/j.neuron.2014.07.013  0.68
2014 Lyons DB, Lomvardas S. Repressive histone methylation: a case study in deterministic versus stochastic gene regulation. Biochimica Et Biophysica Acta. 1839: 1373-84. PMID 24859457 DOI: 10.1016/j.bbagrm.2014.05.010  0.68
2014 Fancy SP, Harrington EP, Baranzini SE, Silbereis JC, Shiow LR, Yuen TJ, Huang EJ, Lomvardas S, Rowitch DH. Parallel states of pathological Wnt signaling in neonatal brain injury and colon cancer. Nature Neuroscience. 17: 506-12. PMID 24609463 DOI: 10.1038/nn.3676  0.68
2013 Dalton RP, Lyons DB, Lomvardas S. Co-opting the unfolded protein response to elicit olfactory receptor feedback. Cell. 155: 321-32. PMID 24120133 DOI: 10.1016/j.cell.2013.09.033  0.68
2013 Colquitt BM, Allen WE, Barnea G, Lomvardas S. Alteration of genic 5-hydroxymethylcytosine patterning in olfactory neurons correlates with changes in gene expression and cell identity. Proceedings of the National Academy of Sciences of the United States of America. 110: 14682-7. PMID 23969834 DOI: 10.1073/pnas.1302759110  0.68
2013 Lyons DB, Allen WE, Goh T, Tsai L, Barnea G, Lomvardas S. An epigenetic trap stabilizes singular olfactory receptor expression. Cell. 154: 325-36. PMID 23870122 DOI: 10.1016/j.cell.2013.06.039  0.68
2013 Magklara A, Lomvardas S. Stochastic gene expression in mammals: lessons from olfaction. Trends in Cell Biology. 23: 449-56. PMID 23689023 DOI: 10.1016/j.tcb.2013.04.005  0.68
2012 Monahan K, Lomvardas S. How keeping active pays off in the olfactory system. Elife. 1: e00326. PMID 23240088 DOI: 10.7554/eLife.00326  0.68
2012 Clowney EJ, LeGros MA, Mosley CP, Clowney FG, Markenskoff-Papadimitriou EC, Myllys M, Barnea G, Larabell CA, Lomvardas S. Nuclear aggregation of olfactory receptor genes governs their monogenic expression. Cell. 151: 724-37. PMID 23141535 DOI: 10.1016/j.cell.2012.09.043  0.68
2012 Johnson MA, Tsai L, Roy DS, Valenzuela DH, Mosley C, Magklara A, Lomvardas S, Liberles SD, Barnea G. Neurons expressing trace amine-associated receptors project to discrete glomeruli and constitute an olfactory subsystem. Proceedings of the National Academy of Sciences of the United States of America. 109: 13410-5. PMID 22837392 DOI: 10.1073/pnas.1206724109  0.68
2012 Birnbaum RY, Clowney EJ, Agamy O, Kim MJ, Zhao J, Yamanaka T, Pappalardo Z, Clarke SL, Wenger AM, Nguyen L, Gurrieri F, Everman DB, Schwartz CE, Birk OS, Bejerano G, ... Lomvardas S, et al. Coding exons function as tissue-specific enhancers of nearby genes. Genome Research. 22: 1059-68. PMID 22442009 DOI: 10.1101/gr.133546.111  0.68
2012 Magklara A, Lomvardas S. Epigenetics and human disease Gene Regulatory Sequences and Human Disease. 2147483647: 253-279. DOI: 10.1007/978-1-4614-1683-8_12  0.68
2011 Clowney EJ, Magklara A, Colquitt BM, Pathak N, Lane RP, Lomvardas S. High-throughput mapping of the promoters of the mouse olfactory receptor genes reveals a new type of mammalian promoter and provides insight into olfactory receptor gene regulation. Genome Research. 21: 1249-59. PMID 21705439 DOI: 10.1101/gr.120162.110  0.68
2011 Magklara A, Yen A, Colquitt BM, Clowney EJ, Allen W, Markenscoff-Papadimitriou E, Evans ZA, Kheradpour P, Mountoufaris G, Carey C, Barnea G, Kellis M, Lomvardas S. An epigenetic signature for monoallelic olfactory receptor expression. Cell. 145: 555-70. PMID 21529909 DOI: 10.1016/j.cell.2011.03.040  0.68
2009 Nolis IK, McKay DJ, Mantouvalou E, Lomvardas S, Merika M, Thanos D. Transcription factors mediate long-range enhancer-promoter interactions. Proceedings of the National Academy of Sciences of the United States of America. 106: 20222-7. PMID 19923429 DOI: 10.1073/pnas.0902454106  0.68
2006 Lomvardas S, Barnea G, Pisapia DJ, Mendelsohn M, Kirkland J, Axel R. Interchromosomal interactions and olfactory receptor choice. Cell. 126: 403-13. PMID 16873069 DOI: 10.1016/j.cell.2006.06.035  0.68
2003 Guan Z, Kim JH, Lomvardas S, Holick K, Xu S, Kandel ER, Schwartz JH. p38 MAP kinase mediates both short-term and long-term synaptic depression in aplysia. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 23: 7317-25. PMID 12917365 DOI: 10.1523/JNEUROSCI.23-19-07317.2003  0.68
2002 Guan Z, Giustetto M, Lomvardas S, Kim JH, Miniaci MC, Schwartz JH, Thanos D, Kandel ER. Integration of long-term-memory-related synaptic plasticity involves bidirectional regulation of gene expression and chromatin structure. Cell. 111: 483-93. PMID 12437922 DOI: 10.1016/S0092-8674(02)01074-7  0.68
2002 Lomvardas S, Thanos D. Modifying gene expression programs by altering core promoter chromatin architecture. Cell. 110: 261-71. PMID 12150933 DOI: 10.1016/S0092-8674(02)00822-X  0.68
2002 Lomvardas S, Thanos D. Opening chromatin. Molecular Cell. 9: 209-11. PMID 11864594 DOI: 10.1016/S1097-2765(02)00463-X  0.68
2001 Lomvardas S, Thanos D. Nucleosome sliding via TBP DNA binding in vivo. Cell. 106: 685-96. PMID 11572775 DOI: 10.1016/S0092-8674(01)00490-1  0.68
2001 Munshi N, Agalioti T, Lomvardas S, Merika M, Chen G, Thanos D. Coordination of a transcriptional switch by HMGI(Y) acetylation. Science (New York, N.Y.). 293: 1133-6. PMID 11498590 DOI: 10.1126/science.293.5532.1133  0.68
2000 Agalioti T, Lomvardas S, Parekh B, Yie J, Maniatis T, Thanos D. Ordered recruitment of chromatin modifying and general transcription factors to the IFN-beta promoter. Cell. 103: 667-78. PMID 11106736 DOI: 10.1016/S0092-8674(00)00169-0  0.68
1999 Munshi N, Yie Y, Merika M, Senger K, Lomvardas S, Agalioti T, Thanos D. The IFN-beta enhancer: a paradigm for understanding activation and repression of inducible gene expression. Cold Spring Harbor Symposia On Quantitative Biology. 64: 149-59. PMID 11232280 DOI: 10.1101/sqb.1999.64.149  0.68
1999 Jho Eh, Lomvardas S, Costantini F. A GSK3beta phosphorylation site in axin modulates interaction with beta-catenin and Tcf-mediated gene expression. Biochemical and Biophysical Research Communications. 266: 28-35. PMID 10581160 DOI: 10.1006/bbrc.1999.1760  0.68
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