Rainer Friedrich - Publications

Friedrich Miescher Institut, Basel, Basel-Stadt, Switzerland 

64 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Satou C, Neve RL, Oyibo HK, Zmarz P, Huang KH, Arn Bouldoires E, Mori T, Higashijima SI, Keller GB, Friedrich RW. A viral toolbox for conditional and transneuronal gene expression in zebrafish. Elife. 11. PMID 35866706 DOI: 10.7554/eLife.77153  0.529
2021 Vergara HM, Pape C, Meechan KI, Zinchenko V, Genoud C, Wanner AA, Mutemi KN, Titze B, Templin RM, Bertucci PY, Simakov O, Dürichen W, Machado P, Savage EL, Schermelleh L, ... ... Friedrich RW, et al. Whole-body integration of gene expression and single-cell morphology. Cell. PMID 34380046 DOI: 10.1016/j.cell.2021.07.017  0.659
2021 Rupprecht P, Carta S, Hoffmann A, Echizen M, Blot A, Kwan AC, Dan Y, Hofer SB, Kitamura K, Helmchen F, Friedrich RW. A database and deep learning toolbox for noise-optimized, generalized spike inference from calcium imaging. Nature Neuroscience. PMID 34341584 DOI: 10.1038/s41593-021-00895-5  0.77
2021 Friedrich RW, Wanner AA. Dense Circuit Reconstruction to Understand Neuronal Computation: Focus on Zebrafish. Annual Review of Neuroscience. PMID 33730512 DOI: 10.1146/annurev-neuro-110220-013050  0.744
2020 Huang KH, Rupprecht P, Frank T, Kawakami K, Bouwmeester T, Friedrich RW. A virtual reality system to analyze neural activity and behavior in adult zebrafish. Nature Methods. PMID 32123394 DOI: 10.1038/S41592-020-0759-2  0.779
2020 Wanner AA, Friedrich RW. Whitening of odor representations by the wiring diagram of the olfactory bulb. Nature Neuroscience. PMID 31959937 DOI: 10.1038/S41593-019-0576-Z  0.792
2020 Templin R, Vergara H, Pape C, Meechan K, Zinchenko V, Wanner A, Titze B, Genoud C, Betucci P, Savage E, Machado P, Simakov O, Friedrich R, Schwab Y, Kreshuk A, et al. Whole Body Integration of Gene Expression and Morphology Using Correlative Volume EM Microscopy and Microanalysis. 26: 1044-1045. DOI: 10.1017/S1431927620016773  0.638
2019 Frank T, Mönig NR, Satou C, Higashijima SI, Friedrich RW. Associative conditioning remaps odor representations and modifies inhibition in a higher olfactory brain area. Nature Neuroscience. PMID 31591559 DOI: 10.1038/S41593-019-0495-Z  0.677
2018 Rupprecht P, Friedrich RW. Precise Synaptic Balance in the Zebrafish Homolog of Olfactory Cortex. Neuron. PMID 30318416 DOI: 10.1016/j.neuron.2018.09.013  0.822
2018 Namekawa I, Moenig NR, Friedrich RW. Rapid olfactory discrimination learning in adult zebrafish. Experimental Brain Research. PMID 30088022 DOI: 10.1007/s00221-018-5352-x  0.366
2018 Berens P, Freeman J, Deneux T, Chenkov N, McColgan T, Speiser A, Macke JH, Turaga SC, Mineault P, Rupprecht P, Gerhard S, Friedrich RW, Friedrich J, Paninski L, Pachitariu M, et al. Community-based benchmarking improves spike rate inference from two-photon calcium imaging data. Plos Computational Biology. 14: e1006157. PMID 29782491 DOI: 10.1371/Journal.Pcbi.1006157  0.774
2017 Jacobson GA, Rupprecht P, Friedrich RW. Experience-Dependent Plasticity of Odor Representations in the Telencephalon of Zebrafish. Current Biology : Cb. PMID 29249662 DOI: 10.1016/j.cub.2017.11.007  0.83
2016 Wanner AA, Genoud C, Friedrich RW. 3-dimensional electron microscopic imaging of the zebrafish olfactory bulb and dense reconstruction of neurons. Scientific Data. 3: 160100. PMID 27824337 DOI: 10.1038/Sdata.2016.100  0.729
2016 Zou M, Friedrich RW, Bianco IH. Targeted Electroporation in Embryonic, Larval, and Adult Zebrafish. Methods in Molecular Biology (Clifton, N.J.). 1451: 259-69. PMID 27464813 DOI: 10.1007/978-1-4939-3771-4_17  0.457
2016 Rupprecht P, Prendergast A, Wyart C, Friedrich RW. Remote z-scanning with a macroscopic voice coil motor for fast 3D multiphoton laser scanning microscopy. Biomedical Optics Express. 7: 1656-71. PMID 27231612 DOI: 10.1364/Boe.7.001656  0.779
2016 Wanner AA, Genoud C, Masudi T, Siksou L, Friedrich RW. Dense EM-based reconstruction of the interglomerular projectome in the zebrafish olfactory bulb. Nature Neuroscience. PMID 27089019 DOI: 10.1038/Nn.4290  0.776
2015 Frank T, Friedrich RW. Neurobiology: Individuality sniffed out in flies. Nature. PMID 26416743 DOI: 10.1038/Nature15636  0.682
2015 Genoud C, Wanner A, Friedrich R. The Acquisition of Large Datasets with Serial-Block Face Scanning Electron Microscopy following Light Microscopy Image Acquisition: Workflows from Sample Preparation to Image Acquisition Microscopy and Microanalysis. 21: 1117-1118. DOI: 10.1017/S1431927615006376  0.637
2014 Friedrich RW, Wiechert MT. Neuronal circuits and computations: pattern decorrelation in the olfactory bulb. Febs Letters. 588: 2504-13. PMID 24911205 DOI: 10.1016/j.febslet.2014.05.055  0.522
2014 Zou M, De Koninck P, Neve RL, Friedrich RW. Fast gene transfer into the adult zebrafish brain by herpes simplex virus 1 (HSV-1) and electroporation: methods and optogenetic applications. Frontiers in Neural Circuits. 8: 41. PMID 24834028 DOI: 10.3389/Fncir.2014.00041  0.479
2014 Wolff SB, Gründemann J, Tovote P, Krabbe S, Jacobson GA, Müller C, Herry C, Ehrlich I, Friedrich RW, Letzkus JJ, Lüthi A. Amygdala interneuron subtypes control fear learning through disinhibition. Nature. 509: 453-8. PMID 24814341 DOI: 10.1038/Nature13258  0.626
2014 Friedrich RW. Calcium imaging in the intact olfactory system of zebrafish and mouse. Cold Spring Harbor Protocols. 2014: 310-6. PMID 24591696 DOI: 10.1101/pdb.prot081166  0.524
2014 Friedrich RW, Moressis A, Frank T. Stereotopy versus stochasticity in olfaction. Nature Neuroscience. 17: 147-9. PMID 24473259 DOI: 10.1038/Nn.3630  0.642
2013 Hinz C, Namekawa I, Namekawa R, Behrmann-Godel J, Oppelt C, Jaeschke A, Müller A, Friedrich RW, Gerlach G. Olfactory imprinting is triggered by MHC peptide ligands. Scientific Reports. 3: 2800. PMID 24077566 DOI: 10.1038/srep02800  0.313
2013 Zhu P, Frank T, Friedrich RW. Equalization of odor representations by a network of electrically coupled inhibitory interneurons. Nature Neuroscience. 16: 1678-86. PMID 24077563 DOI: 10.1038/Nn.3528  0.737
2013 Katz P, Grillner S, Wilson R, Borst A, Greenspan R, Buzsáki G, Martin K, Marder E, Kristan W, Friedrich R, Chklovskii D. Vertebrate versus invertebrate neural circuits. Current Biology : Cb. 23: R504-6. PMID 23943928 DOI: 10.1016/J.Cub.2013.05.039  0.559
2013 Friedrich RW. Neuronal computations in the olfactory system of zebrafish. Annual Review of Neuroscience. 36: 383-402. PMID 23725002 DOI: 10.1146/annurev-neuro-062111-150504  0.524
2013 Jacobson GA, Friedrich RW. Neural circuits: random design of a higher-order olfactory projection. Current Biology : Cb. 23: R448-51. PMID 23701688 DOI: 10.1016/j.cub.2013.04.016  0.668
2013 Friedrich RW, Genoud C, Wanner AA. Analyzing the structure and function of neuronal circuits in zebrafish. Frontiers in Neural Circuits. 7: 71. PMID 23630467 DOI: 10.3389/Fncir.2013.00071  0.743
2013 Miyasaka N, Wanner AA, Li J, Mack-Bucher J, Genoud C, Yoshihara Y, Friedrich RW. Functional development of the olfactory system in zebrafish. Mechanisms of Development. 130: 336-46. PMID 23010553 DOI: 10.1016/J.Mod.2012.09.001  0.794
2012 Schärer YP, Shum J, Moressis A, Friedrich RW. Dopaminergic modulation of synaptic transmission and neuronal activity patterns in the zebrafish homolog of olfactory cortex. Frontiers in Neural Circuits. 6: 76. PMID 23109918 DOI: 10.3389/Fncir.2012.00076  0.775
2012 Spors H, Albeanu DF, Murthy VN, Rinberg D, Uchida N, Wachowiak M, Friedrich RW. Illuminating vertebrate olfactory processing. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 14102-8. PMID 23055479 DOI: 10.1523/Jneurosci.3328-12.2012  0.803
2012 Zhu P, Fajardo O, Shum J, Zhang Schärer YP, Friedrich RW. High-resolution optical control of spatiotemporal neuronal activity patterns in zebrafish using a digital micromirror device. Nature Protocols. 7: 1410-25. PMID 22743832 DOI: 10.1038/Nprot.2012.072  0.757
2012 Bundschuh ST, Zhu P, Schärer YP, Friedrich RW. Dopaminergic modulation of mitral cells and odor responses in the zebrafish olfactory bulb. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 6830-40. PMID 22593052 DOI: 10.1523/JNEUROSCI.6026-11.2012  0.343
2012 Mathuru AS, Kibat C, Cheong WF, Shui G, Wenk MR, Friedrich RW, Jesuthasan S. Chondroitin fragments are odorants that trigger fear behavior in fish. Current Biology : Cb. 22: 538-44. PMID 22365850 DOI: 10.1016/j.cub.2012.01.061  0.333
2011 Blumhagen F, Zhu P, Shum J, Schärer YP, Yaksi E, Deisseroth K, Friedrich RW. Neuronal filtering of multiplexed odour representations. Nature. 479: 493-8. PMID 22080956 DOI: 10.1038/Nature10633  0.825
2011 Friedrich RW. Olfactory neuroscience: beyond the bulb. Current Biology : Cb. 21: R438-40. PMID 21640905 DOI: 10.1016/j.cub.2011.04.036  0.417
2010 Friedrich RW, Jacobson GA, Zhu P. Circuit neuroscience in zebrafish. Current Biology : Cb. 20: R371-81. PMID 21749961 DOI: 10.1016/j.cub.2010.02.039  0.665
2010 Wiechert MT, Judkewitz B, Riecke H, Friedrich RW. Mechanisms of pattern decorrelation by recurrent neuronal circuits. Nature Neuroscience. 13: 1003-10. PMID 20581841 DOI: 10.1038/Nn.2591  0.762
2010 Niessing J, Friedrich RW. Olfactory pattern classification by discrete neuronal network states. Nature. 465: 47-52. PMID 20393466 DOI: 10.1038/nature08961  0.78
2010 Wick SD, Wiechert MT, Friedrich RW, Riecke H. Pattern orthogonalization via channel decorrelation by adaptive networks. Journal of Computational Neuroscience. 28: 29-45. PMID 19714457 DOI: 10.1007/S10827-009-0183-1  0.397
2009 Zhu P, Narita Y, Bundschuh ST, Fajardo O, Schärer YP, Chattopadhyaya B, Bouldoires EA, Stepien AE, Deisseroth K, Arber S, Sprengel R, Rijli FM, Friedrich RW. Optogenetic Dissection of Neuronal Circuits in Zebrafish using Viral Gene Transfer and the Tet System. Frontiers in Neural Circuits. 3: 21. PMID 20126518 DOI: 10.3389/Neuro.04.021.2009  0.74
2009 Friedrich RW, Yaksi E, Judkewitz B, Wiechert MT. Processing of odor representations by neuronal circuits in the olfactory bulb. Annals of the New York Academy of Sciences. 1170: 293-7. PMID 19686150 DOI: 10.1111/j.1749-6632.2009.04010.x  0.851
2009 Yaksi E, von Saint Paul F, Niessing J, Bundschuh ST, Friedrich RW. Transformation of odor representations in target areas of the olfactory bulb. Nature Neuroscience. 12: 474-82. PMID 19305401 DOI: 10.1038/nn.2288  0.854
2008 Tabor R, Yaksi E, Friedrich RW. Multiple functions of GABA A and GABA B receptors during pattern processing in the zebrafish olfactory bulb. The European Journal of Neuroscience. 28: 117-27. PMID 18616562 DOI: 10.1111/j.1460-9568.2008.06316.x  0.704
2008 Tabor R, Friedrich RW. Pharmacological analysis of ionotropic glutamate receptor function in neuronal circuits of the zebrafish olfactory bulb. Plos One. 3: e1416. PMID 18183297 DOI: 10.1371/journal.pone.0001416  0.416
2007 Yaksi E, Judkewitz B, Friedrich RW. Topological reorganization of odor representations in the olfactory bulb. Plos Biology. 5: e178. PMID 17608564 DOI: 10.1371/journal.pbio.0050178  0.847
2007 Mack-Bucher JA, Li J, Friedrich RW. Early functional development of interneurons in the zebrafish olfactory bulb. The European Journal of Neuroscience. 25: 460-70. PMID 17284187 DOI: 10.1111/j.1460-9568.2006.05290.x  0.519
2006 Yaksi E, Friedrich RW. Reconstruction of firing rate changes across neuronal populations by temporally deconvolved Ca2+ imaging. Nature Methods. 3: 377-83. PMID 16628208 DOI: 10.1038/nmeth874  0.734
2006 Spors H, Wachowiak M, Cohen LB, Friedrich RW. Temporal dynamics and latency patterns of receptor neuron input to the olfactory bulb. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 26: 1247-59. PMID 16436612 DOI: 10.1523/JNEUROSCI.3100-05.2006  0.79
2006 Friedrich RW. Mechanisms of odor discrimination: neurophysiological and behavioral approaches. Trends in Neurosciences. 29: 40-7. PMID 16290274 DOI: 10.1016/j.tins.2005.10.004  0.472
2005 Feng B, Bulchand S, Yaksi E, Friedrich RW, Jesuthasan S. The recombination activation gene 1 (Rag1) is expressed in a subset of zebrafish olfactory neurons but is not essential for axon targeting or amino acid detection. Bmc Neuroscience. 6: 46. PMID 16018818 DOI: 10.1186/1471-2202-6-46  0.762
2005 Li J, Mack JA, Souren M, Yaksi E, Higashijima S, Mione M, Fetcho JR, Friedrich RW. Early development of functional spatial maps in the zebrafish olfactory bulb. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 25: 5784-95. PMID 15958745 DOI: 10.1523/JNEUROSCI.0922-05.2005  0.754
2004 Friedrich RW, Habermann CJ, Laurent G. Multiplexing using synchrony in the zebrafish olfactory bulb. Nature Neuroscience. 7: 862-71. PMID 15273692 DOI: 10.1038/nn1292  0.693
2004 Tabor R, Yaksi E, Weislogel JM, Friedrich RW. Processing of odor mixtures in the zebrafish olfactory bulb. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 24: 6611-20. PMID 15269273 DOI: 10.1523/JNEUROSCI.1834-04.2004  0.76
2004 Wachowiak M, Denk W, Friedrich RW. Functional organization of sensory input to the olfactory bulb glomerulus analyzed by two-photon calcium imaging. Proceedings of the National Academy of Sciences of the United States of America. 101: 9097-102. PMID 15184670 DOI: 10.1073/pnas.0400438101  0.773
2004 Friedrich RW, Laurent G. Dynamics of olfactory bulb input and output activity during odor stimulation in zebrafish. Journal of Neurophysiology. 91: 2658-69. PMID 14960561 DOI: 10.1152/jn.01143.2003  0.724
2002 Friedrich RW. Real time odor representations. Trends in Neurosciences. 25: 487-9. PMID 12220868 DOI: 10.1016/S0166-2236(02)02256-7  0.432
2001 Friedrich RW, Stopfer M. Recent dynamics in olfactory population coding Current Opinion in Neurobiology. 11: 468-474. PMID 11502394 DOI: 10.1016/S0959-4388(00)00236-1  0.729
2001 Laurent G, Stopfer M, Friedrich RW, Rabinovich MI, Volkovskii A, Abarbanel HD. Odor encoding as an active, dynamical process: experiments, computation, and theory. Annual Review of Neuroscience. 24: 263-97. PMID 11283312 DOI: 10.1146/annurev.neuro.24.1.263  0.788
2001 Friedrich RW, Laurent G. Dynamic optimization of odor representations by slow temporal patterning of mitral cell activity. Science (New York, N.Y.). 291: 889-94. PMID 11157170 DOI: 10.1126/science.291.5505.889  0.694
1998 Friedrich RW, Korsching SI. Chemotopic, Combinatorial, and Noncombinatorial Odorant Representations in the Olfactory Bulb Revealed Using a Voltage-Sensitive Axon Tracer The Journal of Neuroscience. 18: 9977-9988. DOI: 10.1523/JNEUROSCI.18-23-09977.1998  0.771
1997 Korsching SI, Argo S, Campenhausen H, Friedrich RW, Rummrich A, Weth F. Olfaction in zebrafish: what does a tiny teleost tell us? Seminars in Cell & Developmental Biology. 8: 181-7. PMID 15001094 DOI: 10.1006/scdb.1996.0136  0.828
1997 Friedrich RW, Korsching SI. Combinatorial and chemotopic odorant coding in the zebrafish olfactory bulb visualized by optical imaging. Neuron. 18: 737-52. PMID 9182799 DOI: 10.1016/S0896-6273(00)80314-1  0.792
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