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Bradley M. Dickson, Ph.D. - Publications

Affiliations: 
2006 Clemson University, Clemson, SC, United States 
Area:
Physical Chemistry, Mathematics
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28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Khan SA, Dickson BM, Peters B. How fluxional reactants limit the accuracy/efficiency of infrequent metadynamics. The Journal of Chemical Physics. 153: 054125. PMID 32770912 DOI: 10.1063/5.0006980  0.322
2020 Kupai A, Vaughan RM, Dickson BM, Rothbart SB. A Degenerate Peptide Library Approach to Reveal Sequence Determinants of Methyllysine-Driven Protein Interactions. Frontiers in Cell and Developmental Biology. 8: 241. PMID 32328492 DOI: 10.3389/Fcell.2020.00241  0.371
2020 Tiedemann RL, Du Q, Dickson BM, Kong X, Chomiak AA, Zhou W, Johnson BK, Baylin SB, Jones PA, Clark SJ, Rothbart SB. High‐resolution Epigenome Mapping Reveals Distinct and Divergent Roles for UHRF1 in the Maintenance of DNA Methylation The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.05966  0.303
2019 Vaughan RM, Rothbart SB, Dickson BM. The finger loop of the SRA domain in the E3 ligase UHRF1 is a regulator of ubiquitin targeting and is required for maintaining DNA methylation. The Journal of Biological Chemistry. PMID 31481468 DOI: 10.1074/Jbc.Ra119.010160  0.366
2018 Cornett EM, Dickson BM, Krajewski K, Spellmon N, Umstead A, Vaughan RM, Shaw KM, Versluis PP, Cowles MW, Brunzelle J, Yang Z, Vega IE, Sun ZW, Rothbart SB. A functional proteomics platform to reveal the sequence determinants of lysine methyltransferase substrate selectivity. Science Advances. 4: eaav2623. PMID 30498785 DOI: 10.1126/Sciadv.Aav2623  0.343
2018 Dickson BM. Erroneous rates and false statistical confirmations from infrequent metadynamics and other equivalent violations of the hyperdynamics paradigm. Journal of Chemical Theory and Computation. PMID 30468579 DOI: 10.1021/Acs.Jctc.8B00848  0.309
2018 Shah RN, Grzybowski AT, Cornett EM, Johnstone AL, Dickson BM, Boone BA, Cheek MA, Cowles MW, Maryanski D, Meiners MJ, Tiedemann RL, Vaughan RM, Arora N, Sun ZW, Rothbart SB, et al. Examining the Roles of H3K4 Methylation States with Systematically Characterized Antibodies. Molecular Cell. PMID 30244833 DOI: 10.1016/J.Molcel.2018.08.015  0.344
2018 Vaughan RM, Dickson BM, Whelihan MF, Johnstone AL, Cornett EM, Cheek MA, Ausherman CA, Cowles MW, Sun ZW, Rothbart SB. Chromatin structure and its chemical modifications regulate the ubiquitin ligase substrate selectivity of UHRF1. Proceedings of the National Academy of Sciences of the United States of America. PMID 30104358 DOI: 10.1073/Pnas.1806373115  0.37
2018 Suh JL, Watts B, Stuckey JI, Norris-Drouin JL, Cholensky SH, Dickson BM, An Y, Mathea S, Salah E, Knapp S, Khan A, Adams AT, Strahl BD, Sagum CA, Bedford MT, et al. Quantitative characterization of bivalent probes for a dual bromodomain protein, Transcription Initiation Factor TFIID subunit 1, TAF1. Biochemistry. PMID 29558110 DOI: 10.1021/Acs.Biochem.8B00150  0.329
2018 Vaughan RM, Dickson BM, Cornett EM, Harrison JS, Kuhlman B, Rothbart SB. Comparative biochemical analysis of UHRF proteins reveals molecular mechanisms that uncouple UHRF2 from DNA methylation maintenance. Nucleic Acids Research. PMID 29506131 DOI: 10.1093/Nar/Gky151  0.371
2017 Dickson BM. Overfill protection and hyperdynamics in adaptively biased simulations. Journal of Chemical Theory and Computation. PMID 28974089 DOI: 10.1021/Acs.Jctc.7B00821  0.311
2017 Cornett EM, Dickson BM, Rothbart SB. Analysis of Histone Antibody Specificity with Peptide Microarrays. Journal of Visualized Experiments : Jove. PMID 28809825 DOI: 10.3791/55912  0.327
2016 Dickson BM, de Waal PW, Ramjan ZH, Xu HE, Rothbart SB. A fast, open source implementation of adaptive biasing potentials uncovers a ligand design strategy for the chromatin regulator BRD4. The Journal of Chemical Physics. 145: 154113. PMID 27782467 DOI: 10.1063/1.4964776  0.383
2016 Harrison JS, Cornett EM, Goldfarb D, DaRosa PA, Li ZM, Yan F, Dickson BM, Guo AH, Cantu DV, Kaustov L, Brown PJ, Arrowsmith CH, Erie DA, Major MB, Klevit RE, et al. Hemi-methylated DNA regulates DNA methylation inheritance through allosteric activation of H3 ubiquitylation by UHRF1. Elife. 5. PMID 27595565 DOI: 10.7554/Elife.17101  0.359
2016 Stuckey JI, Simpson C, Norris-Drouin JL, Cholensky SH, Lee J, Pasca R, Cheng N, Dickson BM, Pearce KH, Frye SV, James LI. Structure-activity relationships and kinetic studies of peptidic antagonists of CBX chromodomains. Journal of Medicinal Chemistry. PMID 27571219 DOI: 10.1021/Acs.Jmedchem.6B00801  0.357
2016 Cornett EM, Dickson BM, Vaughan RM, Krishnan S, Trievel RC, Strahl BD, Rothbart SB. Substrate Specificity Profiling of Histone-Modifying Enzymes by Peptide Microarray. Methods in Enzymology. 574: 31-52. PMID 27423856 DOI: 10.1016/Bs.Mie.2016.01.008  0.35
2016 Stuckey JI, Dickson BM, Cheng N, Liu Y, Norris JL, Cholensky SH, Tempel W, Qin S, Huber KG, Sagum C, Black K, Li F, Huang XP, Roth BL, Baughman BM, et al. A cellular chemical probe targeting the chromodomains of Polycomb repressive complex 1. Nature Chemical Biology. PMID 26807715 DOI: 10.1038/Nchembio.2007  0.307
2016 Harrison JS, Cornett EM, Goldfarb D, DaRosa PA, Li ZM, Yan F, Dickson BM, Guo AH, Cantu DV, Kaustov L, Brown PJ, Arrowsmith CH, Erie DA, Major MB, Klevit RE, et al. Author response: Hemi-methylated DNA regulates DNA methylation inheritance through allosteric activation of H3 ubiquitylation by UHRF1 Elife. DOI: 10.7554/Elife.17101.024  0.314
2015 Dickson BM. μ-tempered metadynamics: Artifact independent convergence times for wide hills. The Journal of Chemical Physics. 143: 234109. PMID 26696048 DOI: 10.1063/1.4937939  0.304
2015 Rothbart SB, Dickson BM, Strahl BD. From histones to ribosomes: a chromatin regulator tangoes with translation. Cancer Discovery. 5: 228-30. PMID 25749972 DOI: 10.1158/2159-8290.Cd-15-0073  0.354
2015 Perfetti MT, Baughman BM, Dickson BM, Mu Y, Cui G, Mader P, Dong A, Norris JL, Rothbart SB, Strahl BD, Brown PJ, Janzen WP, Arrowsmith CH, Mer G, McBride KM, et al. Identification of a fragment-like small molecule ligand for the methyl-lysine binding protein, 53BP1. Acs Chemical Biology. 10: 1072-81. PMID 25590533 DOI: 10.1021/Cb500956G  0.37
2013 Rothbart SB, Dickson BM, Ong MS, Krajewski K, Houliston S, Kireev DB, Arrowsmith CH, Strahl BD. Multivalent histone engagement by the linked tandem Tudor and PHD domains of UHRF1 is required for the epigenetic inheritance of DNA methylation. Genes & Development. 27: 1288-98. PMID 23752590 DOI: 10.1101/Gad.220467.113  0.36
2013 Rothbart SB, Dickson BM, Ong MS, Krajewski K, Houliston S, Kireev DB, Arrowsmith CH, Strahl BD. Abstract PR03: Multivalent histone engagement by the linked tandem Tudor and PHD domains of UHRF1 is required for DNA methylation maintenance Cancer Research. 73. DOI: 10.1158/1538-7445.Cec13-Pr03  0.374
2012 Dickson BM, Huang H, Post CB. Unrestrained computation of free energy along a path. The Journal of Physical Chemistry. B. 116: 11046-55. PMID 22816870 DOI: 10.1021/Jp304720M  0.326
2012 Huang H, Zhao R, Dickson BM, Skeel RD, Post CB. αC helix as a switch in the conformational transition of Src/CDK-like kinase domains. The Journal of Physical Chemistry. B. 116: 4465-75. PMID 22448785 DOI: 10.1021/Jp301628R  0.305
2010 Dickson BM, Legoll F, Lelièvre T, Stoltz G, Fleurat-Lessard P. Free energy calculations: an efficient adaptive biasing potential method. The Journal of Physical Chemistry. B. 114: 5823-30. PMID 20380408 DOI: 10.1021/Jp100926H  0.326
2009 Dickson BM, Makarov DE, Henkelman G. Pitfalls of choosing an order parameter for rare event calculations. The Journal of Chemical Physics. 131: 074108. PMID 19708733 DOI: 10.1063/1.3204008  0.48
2004 Kum O, Dickson BM, Stuart SJ, Uberuaga BP, Voter AF. Parallel replica dynamics with a heterogeneous distribution of barriers: application to n-hexadecane pyrolysis. The Journal of Chemical Physics. 121: 9808-19. PMID 15549854 DOI: 10.1063/1.1807823  0.578
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