Anna Pavlova, Ph.D. - Publications

Affiliations: 
2013 Chemistry University of California, Santa Barbara, Santa Barbara, CA, United States 
Area:
Biochemistry, General Biophysics, Physical Chemistry

9/126 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Pavlova A, Gumbart JC. Mechanism of Action of HBV Capsid Assembly Modulators can be Predicted from a Combination of Molecular Dynamics and Docking Biophysical Journal. 118: 179a. DOI: 10.1016/J.Bpj.2019.11.1095  0.321
2019 Balusek C, Hwang H, Lau CH, Lundquist K, Hazel A, Pavlova A, Lynch DL, Reggio PH, Wang Y, Gumbart JC. Accelerating Membrane Simulations with Hydrogen Mass Repartitioning. Journal of Chemical Theory and Computation. PMID 31265271 DOI: 10.1021/Acs.Jctc.9B00160  0.307
2019 Pavlova A, Gumpart JC. Mechanism of Passenger Cleavage in Autotransporter EspP Explored with QM/MM Molecular Dynamics Simulation Biophysical Journal. 116. DOI: 10.1016/J.Bpj.2018.11.114  0.322
2015 Pavlova A, Cheng CY, Kinnebrew M, Lew J, Dahlquist FW, Han S. Protein structural and surface water rearrangement constitute major events in the earliest aggregation stages of tau. Proceedings of the National Academy of Sciences of the United States of America. PMID 26712030 DOI: 10.1073/Pnas.1504415113  0.607
2013 Franck JM, Pavlova A, Scott JA, Han S. Quantitative cw Overhauser effect dynamic nuclear polarization for the analysis of local water dynamics. Progress in Nuclear Magnetic Resonance Spectroscopy. 74: 33-56. PMID 24083461 DOI: 10.1016/J.Pnmrs.2013.06.001  0.631
2013 Stone KM, Voska J, Kinnebrew M, Pavlova A, Junk MJ, Han S. Structural insight into proteorhodopsin oligomers. Biophysical Journal. 104: 472-81. PMID 23442869 DOI: 10.1016/J.Bpj.2012.11.3831  0.609
2012 Pavlova A, Han S. The Physical Motive of Early Tau Oligomer Formation and Aggregation into Fibrils is Seen through Site-Specific Tracking of Hydration Dynamics Biophysical Journal. 102: 257a. DOI: 10.1016/J.Bpj.2011.11.1414  0.594
2011 Ortony JH, Cheng CY, Franck JM, Kausik R, Pavlova A, Hunt J, Han S. Probing the hydration water diffusion of macromolecular surfaces and interfaces New Journal of Physics. 13. DOI: 10.1088/1367-2630/13/1/015006  0.581
2009 Pavlova A, McCarney ER, Peterson DW, Dahlquist FW, Lew J, Han S. Site-specific dynamic nuclear polarization of hydration water as a generally applicable approach to monitor protein aggregation. Physical Chemistry Chemical Physics : Pccp. 11: 6833-9. PMID 19639158 DOI: 10.1039/B906101K  0.651
Low-probability matches (unlikely to be authored by this person)
2000 Li Z, Stuart RO, Qiao J, Pavlova A, Bush KT, Pohl M, Sakurai H, Nigam SK. A role for timeless in epithelial morphogenesis during kidney development Proceedings of the National Academy of Sciences of the United States of America. 97: 10038-10043. PMID 10963667 DOI: 10.1073/Pnas.97.18.10038  0.242
2019 Gumbart JC, Balusek C, Hwang H, Hon Lau C, Lundquist K, Hazel A, Pavlova A, Lynch D, Reggio P, Wang Y. On the Validity of Hydrogen Mass Repartitioning for CHARMM36 Membrane Systems in NAMD Biophysical Journal. 116: 141a. DOI: 10.1016/J.Bpj.2018.11.782  0.221
2022 Kneller DW, Gerlits O, Daemen LL, Pavlova A, Gumbart JC, Cheng Y, Kovalevsky A. Joint neutron/molecular dynamics vibrational spectroscopy reveals softening of HIV-1 protease upon binding of a tight inhibitor. Physical Chemistry Chemical Physics : Pccp. 24: 3586-3597. PMID 35089990 DOI: 10.1039/d1cp05487b  0.217
2000 Pavlova A, Sakurai H, Leclercq B, Beier DR, Yu AS, Nigam SK. Developmentally regulated expression of organic ion transporters NKT (OAT1), OCT1, NLT (OAT2), and Roct. American Journal of Physiology. Renal Physiology. 278: F635-43. PMID 10751225 DOI: 10.1152/Ajprenal.2000.278.4.F635  0.215
2022 Allsopp R, Pavlova A, Cline T, Salyapongse AM, Gillilan RE, Di YP, Deslouches B, Klauda JB, Gumbart JC, Tristram-Nagle S. Antimicrobial Peptide Mechanism Studied by Scattering-Guided Molecular Dynamics Simulation. The Journal of Physical Chemistry. B. PMID 36067064 DOI: 10.1021/acs.jpcb.2c03193  0.213
2016 Pavlova A, Hwang H, Lundquist K, Balusek C, Gumbart JC. Living on the edge: Simulations of bacterial outer-membrane proteins. Biochimica Et Biophysica Acta. PMID 26826270 DOI: 10.1016/J.Bbamem.2016.01.020  0.206
2008 Delev D, Pavlova A, Heinz S, Blaise MC, Chandra T, Poetsch B, Seifried E, Oldenburg J. Modelling and expression studies of two novel mutations causing factor V deficiency. Thrombosis and Haemostasis. 100: 766-72. PMID 18989519  0.203
2023 Lynch DL, Pavlova A, Fan Z, Gumbart JC. Understanding Virus Structure and Dynamics through Molecular Simulations. Journal of Chemical Theory and Computation. PMID 37192279 DOI: 10.1021/acs.jctc.3c00116  0.202
2017 Hwang H, McCaslin TG, Hazel A, Pagba CV, Nevin CM, Pavlova A, Barry BA, Gumbart JC. Redox-Driven Conformational Dynamics in a Photosystem-II-Inspired β-Hairpin Maquette Determined through Spectroscopy and Simulation. The Journal of Physical Chemistry. B. PMID 28145121 DOI: 10.1021/Acs.Jpcb.6B09481  0.202
2022 Acharya A, Yi D, Pavlova A, Agarwal V, Gumbart JC. Resolving the Hydride Transfer Pathway in Oxidative Conversion of Proline to Pyrrole. Biochemistry. PMID 35072459 DOI: 10.1021/acs.biochem.1c00741  0.197
2023 Kuo KM, Liu J, Pavlova A, Gumbart JC. Drug Binding to BamA Targets Its Lateral Gate. The Journal of Physical Chemistry. B. PMID 37587651 DOI: 10.1021/acs.jpcb.3c04501  0.185
2022 Pavlova A, Bassit L, Cox BD, Korablyov M, Chipot C, Patel D, Lynch DL, Amblard F, Schinazi RF, Gumbart JC. The Mechanism of Action of Hepatitis B Virus Capsid Assembly Modulators Can Be Predicted from Binding to Early Assembly Intermediates. Journal of Medicinal Chemistry. PMID 35290049 DOI: 10.1021/acs.jmedchem.1c02040  0.183
2018 Pavlova A, Parks JM, Gumbart JC. Development of CHARMM-compatible force-field parameters for cobalamin and related cofactors from quantum mechanical calculations. Journal of Chemical Theory and Computation. PMID 29334459 DOI: 10.1021/Acs.Jctc.7B01236  0.181
2012 Pavlova A, Meijer EJ. Understanding the role of water in aqueous ruthenium-catalyzed transfer hydrogenation of ketones. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 13: 3492-6. PMID 22927215 DOI: 10.1002/cphc.201200454  0.179
2021 Pavlova A, Zhang Z, Acharya A, Lynch DL, Pang YT, Mou Z, Parks JM, Chipot C, Gumbart JC. Machine Learning Reveals the Critical Interactions for SARS-CoV-2 Spike Protein Binding to ACE2. The Journal of Physical Chemistry Letters. 5494-5502. PMID 34086459 DOI: 10.1021/acs.jpclett.1c01494  0.177
2024 Fan Z, Pavlova A, Jenkins MC, Bassit L, Salman M, Lynch DL, Patel D, Korablyov M, Finn MG, Schinazi RF, Gumbart JC. Biophysics-Guided Lead Discovery of HBV Capsid Assembly Modifiers. Acs Infectious Diseases. 10: 1162-1173. PMID 38564659 DOI: 10.1021/acsinfecdis.3c00479  0.175
2013 Pavlova A, Trinh TT, van Santen RA, Meijer EJ. Clarifying the role of sodium in the silica oligomerization reaction. Physical Chemistry Chemical Physics : Pccp. 15: 1123-9. PMID 23223613 DOI: 10.1039/C2Cp42436C  0.166
2020 Acharya A, Agarwal R, Baker M, Baudry J, Bhowmik D, Boehm S, Byler K, Coates L, Chen SY, Cooper CJ, Demerdash O, Daidone I, Eblen J, Ellingson SR, Forli S, ... ... Pavlova A, et al. Supercomputer-Based Ensemble Docking Drug Discovery Pipeline with Application to Covid-19. Chemrxiv : the Preprint Server For Chemistry. PMID 33200117 DOI: 10.26434/chemrxiv.12725465.v1  0.165
2017 Pezeshkpoor B, Schreck U, Biswas A, Driesen J, Berkemeier AC, Pavlova A, Müller J, Oldenburg J. An in silico and in vitro approach to elucidate the impact of residues flanking the cleavage scissile bonds of FVIII. Plos One. 12: e0180456. PMID 28683085 DOI: 10.1371/journal.pone.0180456  0.164
2016 Lee CT, Comer J, Herndon C, Leung N, Pavlova A, Swift RV, Tung C, Rowley C, Amaro RE, Chipot C, Wang Y, Gumbart JC. Simulation-based approaches for determining membrane permeability of small compounds. Journal of Chemical Information and Modeling. PMID 27043429 DOI: 10.1021/Acs.Jcim.6B00022  0.164
2014 Pavlova A, Gumbart JC. Resolving the Mechanisms of Bacterial Resistance to Macrolide Antibiotics Biophysical Journal. 106: 39a. DOI: 10.1016/J.Bpj.2013.11.289  0.161
2019 Sharafutdinov IS, Pavlova AS, Akhatova FS, Khabibrakhmanova AM, Rozhina EV, Romanova YJ, Fakhrullin R, Lodochnikova OA, Kurbangalieva AR, Bogachev MI, Kayumov AR. Unraveling the Molecular Mechanism of Selective Antimicrobial Activity of 2(5)-Furanone Derivative against . International Journal of Molecular Sciences. 20. PMID 30736278 DOI: 10.3390/ijms20030694  0.159
2022 Pang YT, Acharya A, Lynch DL, Pavlova A, Gumbart JC. SARS-CoV-2 spike opening dynamics and energetics reveal the individual roles of glycans and their collective impact. Communications Biology. 5: 1170. PMID 36329138 DOI: 10.1038/s42003-022-04138-6  0.158
2022 Fu H, Chen H, Blazhynska M, Goulard Coderc de Lacam E, Szczepaniak F, Pavlova A, Shao X, Gumbart JC, Dehez F, Roux B, Cai W, Chipot C. Accurate determination of protein:ligand standard binding free energies from molecular dynamics simulations. Nature Protocols. PMID 35277695 DOI: 10.1038/s41596-021-00676-1  0.155
2020 Pavlova A, Lynch DL, Daidone I, Zanetti-Polzi L, Smith MD, Chipot C, Kneller DW, Kovalevsky A, Coates L, Golosov AA, Dickson CJ, Velez-Vega C, Duca JS, Vermaas JV, Pang YT, et al. Inhibitor binding influences the protonation states of histidines in SARS-CoV-2 main protease. Chemical Science. 12: 1513-1527. PMID 35356437 DOI: 10.1039/d0sc04942e  0.152
2015 Pavlova A, Gumbart JC. Parametrization of macrolide antibiotics using the force field toolkit. Journal of Computational Chemistry. 36: 2052-63. PMID 26280362 DOI: 10.1002/Jcc.24043  0.151
2020 Pavlova A, Lynch DL, Daidone I, Zanetti-Polzi L, Smith MD, Chipot C, Kneller DW, Kovalevsky A, Coates L, Golosov AA, Dickson CJ, Velez-Vega C, Duca JS, Vermaas JV, Pang YT, et al. Inhibitor binding influences the protonation states of histidines in SARS-CoV-2 main protease. Biorxiv : the Preprint Server For Biology. PMID 32935106 DOI: 10.1101/2020.09.07.286344  0.151
2023 Pavlova AS, Ilyushchenko VV, Kupryushkin MS, Zharkov TD, Dyudeeva ES, Bauer IA, Chubarov AS, Pyshnyi DV, Pyshnaya IA. Complexes and Supramolecular Associates of Dodecyl-Containing Oligonucleotides with Serum Albumin. Biochemistry. Biokhimiia. 88: 1165-1180. PMID 37758315 DOI: 10.1134/S0006297923080102  0.145
2020 Heinrich F, Salyapongse A, Kumagai A, Dupuy FG, Shukla K, Penk A, Huster D, Ernst RK, Pavlova A, Gumbart JC, Deslouches B, Di YP, Tristram-Nagle S. Synergistic Biophysical Techniques Reveal Structural Mechanisms of Engineered Cationic Antimicrobial Peptides in Lipid Model Membranes. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 32166806 DOI: 10.1002/Chem.202000212  0.144
2017 Pavlova A, Parks JM, Oyelere AK, Gumbart JC. Toward the rational design of macrolide antibiotics to combat resistance. Chemical Biology & Drug Design. PMID 28419786 DOI: 10.1111/Cbdd.13004  0.138
2017 Pavlova AS, Dyudeeva ES, Kupryushkin MS, Amirkhanov NV, Pyshnyi DV, Pyshnaya IA. SDS-PAGE Procedure: Application for Characterization of New Entirely Uncharged Nucleic Acids Analogues. Electrophoresis. PMID 29112277 DOI: 10.1002/elps.201700415  0.132
2021 Zanetti-Polzi L, Smith MD, Chipot C, Gumbart JC, Lynch DL, Pavlova A, Smith JC, Daidone I. Tuning Proton Transfer Thermodynamics in SARS-CoV-2 Main Protease: Implications for Catalysis and Inhibitor Design. The Journal of Physical Chemistry Letters. 4195-4202. PMID 33900080 DOI: 10.1021/acs.jpclett.1c00425  0.128
2020 Zanetti-Polzi L, Smith M, Chipot C, Gumbart JC, Lynch DL, Pavlova A, Smith JC, Daidone I. Tuning Proton Transfer Thermodynamics in SARS-Cov-2 Main Protease: Implications for Catalysis and Inhibitor Design. Chemrxiv : the Preprint Server For Chemistry. PMID 33200115 DOI: 10.26434/chemrxiv.13200227  0.127
2020 Pang YT, Pavlova A, Tajkhorshid E, Gumbart JC. Parameterization of a drug molecule with a halogen σ-hole particle using ffTK: Implementation, testing, and comparison. The Journal of Chemical Physics. 153: 164104. PMID 33138412 DOI: 10.1063/5.0022802  0.127
2021 Acharya A, Lynch DL, Pavlova A, Pang YT, Gumbart JC. ACE2 glycans preferentially interact with SARS-CoV-2 over SARS-CoV. Chemical Communications (Cambridge, England). PMID 34019602 DOI: 10.1039/d1cc02305e  0.123
2012 Caspers M, Pavlova A, Driesen J, Harbrecht U, Klamroth R, Kadar J, Fischer R, Kemkes-Matthes B, Oldenburg J. Deficiencies of antithrombin, protein C and protein S - practical experience in genetic analysis of a large patient cohort. Thrombosis and Haemostasis. 108: 247-57. PMID 22627591 DOI: 10.1160/TH11-12-0875  0.122
2022 Bobe A, Pavlova A, Polyakov V. In Situ Downhole Fluid Analysis Systems Using LED, Laser-Induced Fluorescence, and Uranine-Traced Drilling Water. Applied Spectroscopy. 37028221128845. PMID 36194524 DOI: 10.1177/00037028221128845  0.121
2011 Bartsch I, Sandrock K, Lanza F, Nurden P, Hainmann I, Pavlova A, Greinacher A, Tacke U, Barth M, Busse A, Oldenburg J, Bommer M, Strahm B, Superti-Furga A, Zieger B. Deletion of human GP1BB and SEPT5 is associated with Bernard-Soulier syndrome, platelet secretion defect, polymicrogyria, and developmental delay. Thrombosis and Haemostasis. 106: 475-83. PMID 21800012 DOI: 10.1160/TH11-05-0305  0.121
2024 Nenashev AS, Dospekhov DA, Zavaruev MV, Levina II, Roznyatovsky VA, Mironov AV, Pavlova AS, Podrugina TA. Phenoxaphosphonium Mixed Ylides in Ring Expansion Reaction. The Journal of Organic Chemistry. 89: 6533-6538. PMID 38607996 DOI: 10.1021/acs.joc.4c00047  0.12
2011 Luxembourg B, Delev D, Geisen C, Spannagl M, Krause M, Miesbach W, Heller C, Bergmann F, Schmeink U, Grossmann R, Lindhoff-Last E, Seifried E, Oldenburg J, Pavlova A. Molecular basis of antithrombin deficiency. Thrombosis and Haemostasis. 105: 635-46. PMID 21264449 DOI: 10.1160/TH10-08-0538  0.113
2008 Pavlová A, Cernák J, Harms K. Bis(2,2'-bipyridine-κN,N')(maleato-κO,O)nickel(II) 7.34-hydrate. Acta Crystallographica. Section E, Structure Reports Online. 64: m1536-7. PMID 21581151 DOI: 10.1107/S1600536808036672  0.113
2021 Khatwani SL, Pavlova A, Pirot Z. Anion-exchange HPLC assay for separation and quantification of empty and full capsids in multiple adeno-associated virus serotypes. Molecular Therapy. Methods & Clinical Development. 21: 548-558. PMID 33997103 DOI: 10.1016/j.omtm.2021.04.003  0.111
2021 Kranzhöfer D, Pavlova A, Schneider H, Franck P, Glonnegger H, Büchsel M, Yoshimi-Nöllke A, Oldenburg J, Zieger B. Type 2B von Willebrand Disease: Early Manifestation as Neonatal Thrombocytopenia. Hamostaseologie. 41: 469-474. PMID 34942660 DOI: 10.1055/a-1665-6185  0.101
2020 Cooper PC, Pavlova A, Moore GW, Hickey KP, Marlar RA. Recommendations for clinical laboratory testing for protein C deficiency, for the subcommittee on plasma coagulation inhibitors of the ISTH. Journal of Thrombosis and Haemostasis : Jth. 18: 271-277. PMID 31999059 DOI: 10.1111/jth.14667  0.099
2021 Pavlova AS, Yakovleva KI, Epanchitseva AV, Kupryushkin MS, Pyshnaya IA, Pyshnyi DV, Ryabchikova EI, Dovydenko IS. An Influence of Modification with Phosphoryl Guanidine Combined with a 2'-O-Methyl or 2'-Fluoro Group on the Small-Interfering-RNA Effect. International Journal of Molecular Sciences. 22. PMID 34575949 DOI: 10.3390/ijms22189784  0.097
2022 Sokol MB, Chirkina MV, Yabbarov NG, Mollaeva MR, Podrugina TA, Pavlova AS, Temnov VV, Hathout RM, Metwally AA, Nikolskaya ED. Structural Optimization of Platinum Drugs to Improve the Drug-Loading and Antitumor Efficacy of PLGA Nanoparticles. Pharmaceutics. 14. PMID 36365151 DOI: 10.3390/pharmaceutics14112333  0.097
2022 Yu B, Roy Choudhury M, Yang X, Benoit SL, Womack E, Van Mouwerik Lyles K, Acharya A, Kumar A, Yang C, Pavlova A, Zhu M, Yuan Z, Gumbart JC, Boykin DW, Maier RJ, et al. Restoring and Enhancing the Potency of Existing Antibiotics against Drug-Resistant Gram-Negative Bacteria through the Development of Potent Small-Molecule Adjuvants. Acs Infectious Diseases. PMID 35801980 DOI: 10.1021/acsinfecdis.2c00121  0.094
2020 Pavlova AS, Dovydenko IS, Kupryushkin MS, Grigor'eva AE, Pyshnaya IA, Pyshnyi DV. Amphiphilic "Like-a-Brush" Oligonucleotide Conjugates with Three Dodecyl Chains: Self-Assembly Features of Novel Scaffold Compounds for Nucleic Acids Delivery. Nanomaterials (Basel, Switzerland). 10. PMID 33003636 DOI: 10.3390/nano10101948  0.094
2013 Yadegari H, Driesen J, Pavlova A, Biswas A, Ivaskevicius V, Klamroth R, Oldenburg J. Insights into pathological mechanisms of missense mutations in C-terminal domains of von Willebrand factor causing qualitative or quantitative von Willebrand disease. Haematologica. 98: 1315-23. PMID 23539537 DOI: 10.3324/haematol.2013.084111  0.089
2014 Pavlova A, Delev D, Pezeshkpoor B, Müller J, Oldenburg J. Haemophilia A mutations in patients with non-severe phenotype associated with a discrepancy between one-stage and chromogenic factor VIII activity assays. Thrombosis and Haemostasis. 111: 851-61. PMID 24452774 DOI: 10.1160/TH13-08-0690  0.088
2013 Pahl S, Pavlova A, Driesen J, Müller J, Pötzsch B, Oldenburg J. In vitro characterization of recombinant factor VIII concentrates reveals significant differences in protein content, activity and thrombin activation profile. Haemophilia : the Official Journal of the World Federation of Hemophilia. 19: 392-8. PMID 23252674 DOI: 10.1111/hae.12076  0.086
2020 Pavlova AS, Ozhegov GD, Arapidi GP, Butenko IO, Fomin ES, Alemasov NA, Afonnikov DA, Yarullina DR, Ivanov VT, Govorun VM, Kayumov AR. Identification of Antimicrobial Peptides from Novel Lactobacillus fermentum Strain. The Protein Journal. PMID 31933011 DOI: 10.1007/s10930-019-09879-8  0.078
2021 Levina A, Repkova M, Shikina N, Ismagilov Z, Kupryushkin M, Pavlova A, Mazurkova N, Pyshnyi D, Zarytova V. Pronounced therapeutic potential of oligonucleotides fixed on inorganic nanoparticles against highly pathogenic H5N1 influenza A virus in vivo. European Journal of Pharmaceutics and Biopharmaceutics : Official Journal of Arbeitsgemeinschaft Fur Pharmazeutische Verfahrenstechnik E.V. PMID 33753212 DOI: 10.1016/j.ejpb.2021.03.006  0.077
2015 Hilger AC, Halbritter J, Pennimpede T, van der Ven A, Sarma G, Braun DA, Porath JD, Kohl S, Hwang DY, Dworschak GC, Hermann BG, Pavlova A, El-Maarri O, Nöthen MM, Ludwig M, et al. Targeted Re-Sequencing of 29 Candidate Genes and Mouse Expression Studies Implicate ZIC3 and FOXF1 in Human VATER/VATER Association. Human Mutation. PMID 26294094 DOI: 10.1002/humu.22859  0.077
2022 Belova V, Pavlova A, Afasizhev R, Moskalenko V, Korzhanova M, Krivoy A, Cheranev V, Nikashin B, Bulusheva I, Rebrikov D, Korostin D. System analysis of the sequencing quality of human whole exome samples on BGI NGS platform. Scientific Reports. 12: 609. PMID 35022470 DOI: 10.1038/s41598-021-04526-8  0.076
2014 Pahl S, Pavlova A, Driesen J, Oldenburg J. Effect of F8 B domain gene variants on synthesis, secretion, activity and stability of factor VIII protein. Thrombosis and Haemostasis. 111: 58-66. PMID 24108539 DOI: 10.1160/TH13-01-0028  0.073
2023 Hahn AM, Vogg L, Brey S, Schneider A, Schäfer S, Palmisano R, Pavlova A, Sandrock I, Tan L, Fichtner AS, Prinz I, Ravens S, Winkler TH. A monoclonal Trd chain supports the development of the complete set of functional γδ T cell lineages. Cell Reports. 42: 112253. PMID 36920908 DOI: 10.1016/j.celrep.2023.112253  0.073
2023 Buianova AA, Proskura MV, Cheranev VV, Belova VA, Shmitko AO, Pavlova AS, Vasiliadis IA, Suchalko ON, Rebrikov DV, Petrosyan EK, Korostin DO. Candidate Genes for IgA Nephropathy in Pediatric Patients: Exome-Wide Association Study. International Journal of Molecular Sciences. 24. PMID 37958966 DOI: 10.3390/ijms242115984  0.072
2006 Pavlova A, El-Maarri O, Luxembourg B, Lindhoff-Last E, Kochhan L, Bruhn HD, Delev D, Watzka M, Seifried E, Oldenburg J. Detection of heterozygous large deletions in the antithrombin gene using multiplex polymerase chain reaction and denatured high performance liquid chromatography. Haematologica. 91: 1264-7. PMID 16956830  0.07
2013 Pavlova A, Oldenburg J. Defining severity of hemophilia: more than factor levels. Seminars in Thrombosis and Hemostasis. 39: 702-10. PMID 24026911 DOI: 10.1055/s-0033-1354426  0.069
2023 Pavlova A, Tyulenev N, Tretyakova V, Skavronskaya V, Nikolaeva A, Prokofyev A, Stroganova T, Chernyshev B. Learning of new associations invokes a major change in modulations of cortical beta oscillations in human adults. Psychophysiology. e14284. PMID 36906906 DOI: 10.1111/psyp.14284  0.069
2022 Belova V, Shmitko A, Pavlova A, Afasizhev R, Cheranev V, Tabanakova A, Ponikarovskaya N, Rebrikov D, Korostin D. Performance comparison of Agilent new SureSelect All Exon v8 probes with v7 probes for exome sequencing. Bmc Genomics. 23: 582. PMID 35962321 DOI: 10.1186/s12864-022-08825-w  0.069
2010 Jiménez-Cruz G, Mendez M, Chaverri P, Alvarado P, Schröder W, Wulff K, Sandoval M, Herrmann FH, Pavlova A, Oldenburg J, Salazar-Sánchez L. Molecular analysis of FVIII gene in severe HA patients of Costa Rica HäMostaseologie. 30: S150-S152. DOI: 10.1055/s-0037-1619099  0.068
2013 Schwaab R, Pavlova A, Albert T, Caspers M, Oldenburg J. Significance of F8 missense mutations with respect to inhibitor formation. Thrombosis and Haemostasis. 109: 464-70. PMID 23306409 DOI: 10.1160/TH12-07-0521  0.068
2009 Matveeva ED, Podrugina TA, Pavlova AS, Mironov AV, Borisenko AA, Gleiter R, Zefirov NS. Heterocycles from phosphonium-iodonium ylides. Photochemical synthesis of lambda(5)-phosphinolines. The Journal of Organic Chemistry. 74: 9428-32. PMID 19919090 DOI: 10.1021/Jo901984Q  0.068
2013 Astermark J, Donfield SM, Gomperts ED, Schwarz J, Menius ED, Pavlova A, Oldenburg J, Kessing B, DiMichele DM, Shapiro AD, Winkler CA, Berntorp E. The polygenic nature of inhibitors in hemophilia A: results from the Hemophilia Inhibitor Genetics Study (HIGS) Combined Cohort. Blood. 121: 1446-54. PMID 23223434 DOI: 10.1182/blood-2012-06-434803  0.066
2021 Reda S, Rühl H, Witkowski J, Müller J, Pavlova A, Oldenburg J, Pötzsch B. PC Deficiency Testing: Thrombin-Thrombomodulin as PC Activator and Aptamer-Based Enzyme Capturing Increase Diagnostic Accuracy. Frontiers in Cardiovascular Medicine. 8: 755281. PMID 34708097 DOI: 10.3389/fcvm.2021.755281  0.063
2022 Ovsyannikova GS, Fedorova DV, Tesakov IP, Martyanov AA, Ignatova AA, Ponomarenko EA, Zharkov PA, Pavlova AV, Raykina EV, Maschan MA, Panteleev MA, Novichkova GA, Sveshnikova AN, Smetanina NS. Platelet functional abnormalities and clinical presentation in pediatric patients with germline RUNX1, ANKRD26, and ETV6 mutations. Haematologica. PMID 35796010 DOI: 10.3324/haematol.2022.281340  0.062
2012 Yadegari H, Driesen J, Pavlova A, Biswas A, Hertfelder HJ, Oldenburg J. Mutation distribution in the von Willebrand factor gene related to the different von Willebrand disease (VWD) types in a cohort of VWD patients. Thrombosis and Haemostasis. 108: 662-71. PMID 22871923 DOI: 10.1160/TH12-02-0089  0.062
2022 Escuriola Ettingshausen C, Vdovin V, Zozulya N, Svirin P, Andreeva T, Benedik-Dolničar M, Jiménez-Yuste V, Kitanovski L, Zupancic-Šalek S, Pavlova A, Bátorová A, Montaño Mejía C, Abdilova G, Knaub S, Jansen M, et al. Immune Tolerance Induction (ITI) with a pdFVIII/VWF Concentrate (octanate) in 100 Patients in the Observational ITI (ObsITI) Study. Th Open : Companion Journal to Thrombosis and Haemostasis. 6: e124-e134. PMID 35707623 DOI: 10.1055/s-0042-1748756  0.06
2019 Pavlova AA, Butorina AV, Nikolaeva AY, Prokofyev AO, Ulanov MA, Bondarev DP, Stroganova TA. Effortful verb retrieval from semantic memory drives beta suppression in mesial frontal regions involved in action initiation. Human Brain Mapping. PMID 31077488 DOI: 10.1002/hbm.24624  0.059
2019 Sharafutdinov IS, Pavlova AS, Khabibrakhmanova AM, Faizova RG, Kurbangalieva AR, Tanaka K, Trizna EY, Baidamshina DR, Bogachev MI, Kayumov AR. Targeting Bacillus cereus cells: increasing efficiency of antimicrobials by the bornylpossessing 2(5Н)-furanone derivative. The New Microbiologica. 42. PMID 30671584  0.058
2009 Cernák J, Pavlová A, Dusek M, Fejfarová K. Bis(di-2-pyridylamine-kappa2N2,N2')(nitrato-kappa2O,O')nickel(II) nitrate. Acta Crystallographica. Section C, Crystal Structure Communications. 65: m260-2. PMID 19578258 DOI: 10.1107/S0108270109021131  0.057
2019 Ahmed S, Yadegari H, Naz A, Biswas A, Budde U, Saqlain N, Amanat S, Tariq S, Raziq F, Masood S, Pavlova A, Shamsi TS, Oldenburg J. Characterization of the mutation spectrum in a Pakistani cohort of type 3 von Willebrand disease. Haemophilia : the Official Journal of the World Federation of Hemophilia. PMID 31532876 DOI: 10.1111/hae.13841  0.056
2023 Marakshina J, Pavlova A, Ismatullina V, Adamovich T, Mironets S, Sitnikova MA, Lobaskova M, Malykh S. The Russian version of the Abbreviated Math Anxiety Scale: psychometric properties in adolescents aged 13-16 years. Frontiers in Psychology. 14: 1275212. PMID 38162961 DOI: 10.3389/fpsyg.2023.1275212  0.055
2017 Butorina AV, Pavlova AA, Nikolaeva AY, Prokofyev AO, Bondarev DP, Stroganova TA. Simultaneous Processing of Noun Cue and to-be-Produced Verb in Verb Generation Task: Electromagnetic Evidence. Frontiers in Human Neuroscience. 11: 279. PMID 28611613 DOI: 10.3389/fnhum.2017.00279  0.055
2021 Reda S, Müller J, Pavlova A, Pezeshkpoor B, Oldenburg J, Pötzsch B, Rühl H. Functional Characterization of Antithrombin Mutations by Monitoring of Thrombin Inhibition Kinetics. International Journal of Molecular Sciences. 22. PMID 33672736 DOI: 10.3390/ijms22042119  0.054
2016 Delev D, Pavlova A, Grote A, Boström A, Höllig A, Schramm J, Fimmers R, Oldenburg J, Simon M. NOTCH4 gene polymorphisms as potential risk factors for brain arteriovenous malformation development and hemorrhagic presentation. Journal of Neurosurgery. 1-8. PMID 27231971 DOI: 10.3171/2016.3.JNS151731  0.054
2022 Fedorova D, Ovsyannikova G, Kurnikova M, Pavlova A, Konyukhova T, Pshonkin A, Smetanina N. De novo TP53 germline activating mutations in two patients with the phenotype mimicking Diamond-Blackfan anemia. Pediatric Blood & Cancer. 69: e29558. PMID 35084091 DOI: 10.1002/pbc.29558  0.054
2020 Pavlova A, Sharafutdinov I. Recognition of and Role of Innate Type 17 Immunity in Oral Candidiasis. Microorganisms. 8. PMID 32887412 DOI: 10.3390/microorganisms8091340  0.053
2018 Pezeshkpoor B, Czogalla KJ, Caspers M, Berkemeier AC, Liphardt K, Ghosh S, Kellner M, Ulrich S, Pavlova A, Oldenburg J. Variants in FIX propeptide associated with vitamin K antagonist hypersensitivity: functional analysis and additional data confirming the common founder mutations. Annals of Hematology. PMID 29450643 DOI: 10.1007/s00277-018-3264-2  0.052
2019 Ulrich-Merzenich G, Hausen A, Zeitler H, Goldmann G, Oldenburg J, Pavlova A. The role of variant alleles of the mannose-binding lectin in the inhibitor development in severe hemophilia A. Thrombosis Research. 179: 140-146. PMID 31141731 DOI: 10.1016/j.thromres.2019.05.005  0.05
2023 Muñoz-Ruiz M, Llorian M, D'Antuono R, Pavlova A, Mavrigiannaki AM, McKenzie D, García-Cassani B, Iannitto ML, Wu Y, Dart R, Davies D, Jamal-Hanjani M, Jandke A, Ushakov DS, Hayday AC. Interferon-g-dependent interactions between tissue-intrinsic γδ T cells and tissue-infiltrating CD8 T cells limit acute contact dermatitis. The Journal of Allergy and Clinical Immunology. PMID 37562754 DOI: 10.1016/j.jaci.2023.07.015  0.049
2019 Павлова А, Pavlova A. Role Play as an Element of Early Language Professionalization Scientific Research and Development. Modern Communication Studies. 8: 65-69. DOI: 10.12737/ARTICLE_5D4D7552032235.79811604  0.049
2007 Pfeifer H, Wassmann B, Pavlova A, Wunderle L, Oldenburg J, Binckebanck A, Lange T, Hochhaus A, Wystub S, Brück P, Hoelzer D, Ottmann OG. Kinase domain mutations of BCR-ABL frequently precede imatinib-based therapy and give rise to relapse in patients with de novo Philadelphia-positive acute lymphoblastic leukemia (Ph+ ALL). Blood. 110: 727-34. PMID 17405907 DOI: 10.1182/blood-2006-11-052373  0.048
2016 Pavlova AS, Ivanova OA, Chagarovskiy AO, Stebunov NS, Orlov NV, Shumsky AN, Budynina EM, Rybakov VB, Trushkov IV. Domino Staudinger/aza-Wittig/Mannich Reaction: an Approach to Diversity of Di- and Tetrahydropyrrole Scaffolds. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 27685760 DOI: 10.1002/chem.201604056  0.047
2020 Sharapova SO, Skomska-Pawliszak M, Rodina YA, Wolska-Kuśnierz B, Dabrowska-Leonik N, Mikołuć B, Pashchenko OE, Pasic S, Freiberger T, Milota T, Formánková R, Szaflarska A, Siedlar M, Avčin T, Markelj G, ... ... Pavlova AV, et al. The Clinical and Genetic Spectrum of 82 Patients With Deficiency Including a c.256_257delAA Founder Variant in Slavic Countries. Frontiers in Immunology. 11: 900. PMID 32655540 DOI: 10.3389/fimmu.2020.00900  0.046
2019 Repessé Y, Costa C, Palla R, Farrokhi Moshai E, Borel-Derlon A, D'Oiron R, Rothschild C, El-Beshlawy A, Elalfy M, Ramanan V, Eshghi P, Oldenburg J, Pavlova A, Rosendaal FR, Peyvandi F, et al. Role of the factor VIII-binding capacity of endogenous von Willebrand factor on the development of factor VIII inhibitors in patients with severe hemophilia A. Haematologica. PMID 30705098 DOI: 10.3324/haematol.2018.212001  0.045
2022 Ovsyannikova G, Pavlova A, Deordieva E, Raykina E, Pshonkin A, Maschan A, Maschan M. Single Center Experience With Pediatric Patients With GATA2 Deficiency. Frontiers in Pediatrics. 10: 801810. PMID 35273927 DOI: 10.3389/fped.2022.801810  0.044
2013 Repessé Y, Peyron I, Dimitrov JD, Dasgupta S, Moshai EF, Costa C, Borel-Derlon A, Guillet B, D'Oiron R, Aouba A, Rothschild C, Oldenburg J, Pavlova A, Kaveri SV, Lacroix-Desmazes S, et al. Development of inhibitory antibodies to therapeutic factor VIII in severe hemophilia A is associated with microsatellite polymorphisms in the HMOX1 promoter. Haematologica. 98: 1650-5. PMID 23716558 DOI: 10.3324/haematol.2013.084665  0.044
2022 Pezeshkpoor B, Oldenburg J, Pavlova A. Insights into the Molecular Genetic of Hemophilia A and Hemophilia B: The Relevance of Genetic Testing in Routine Clinical Practice. Hamostaseologie. 42: 390-399. PMID 36549291 DOI: 10.1055/a-1945-9429  0.043
2019 Chernova A, Mazin P, Goryunova S, Goryunov D, Demurin Y, Gorlova L, Vanyushkina A, Mair W, Anikanov N, Yushina E, Pavlova A, Martynova E, Garkusha S, Mukhina Z, Savenko E, et al. Ultra-performance liquid chromatography-mass spectrometry for precise fatty acid profiling of oilseed crops. Peerj. 7: e6547. PMID 30863679 DOI: 10.7717/peerj.6547  0.041
2014 Oldenburg J, Pezeshkpoor B, Pavlova A. Historical review on genetic analysis in hemophilia A. Seminars in Thrombosis and Hemostasis. 40: 895-902. PMID 25377322 DOI: 10.1055/s-0034-1395161  0.041
2009 Oldenburg J, Pavlova A, Superti-Furga A, Zieger B, Hainmann I. Identification of a novel factor X deletion in combination with a missense mutation in the F10 gene HäMostaseologie. 29: 184-186. DOI: 10.1055/s-0037-1617019  0.041
2023 Hahn AM, Vogg L, Brey S, Schneider A, Schäfer S, Palmisano R, Pavlova A, Sandrock I, Tan L, Fichtner AS, Prinz I, Ravens S, Winkler TH. A monoclonal Trd chain supports the development of the complete set of functional γδ T cell lineages. Cell Reports. 42: 112558. PMID 37182210 DOI: 10.1016/j.celrep.2023.112558  0.04
2017 Sharma A, Kaut O, Pavlova A, Fröhlich H, Ahmad A, Schmitt I, El-Maarri O, Oldenburg J, Wüllner U. Skewed X-chromosome inactivation and XIST locus methylation levels do not contribute to the lower prevalence of Parkinson's disease in females. Neurobiology of Aging. PMID 28663000 DOI: 10.1016/j.neurobiolaging.2017.05.021  0.039
2006 Astermark J, Oldenburg J, Pavlova A, Berntorp E, Lefvert AK. Polymorphisms in the IL10 but not in the IL1beta and IL4 genes are associated with inhibitor development in patients with hemophilia A. Blood. 107: 3167-72. PMID 16380445 DOI: 10.1182/blood-2005-09-3918  0.039
2018 Escuriola Ettingshausen C, Berntorp E, Dargaud Y, Gutowski Z, Negrier C, Pavlova A, Oldenburg J. Treatment of Haemophilia a (HA) Patients with Inhibitors: Immune Tolerance Induction with a Single Factor VIII/Von Willebrand Factor Concentrate in an Observational Immune Tolerance Induction Study (ObsITI) Blood. 132: 2482-2482. DOI: 10.1182/blood-2018-99-114408  0.038
2022 van Nisselrooij AEL, Moon-Grady AJ, Wacker-Gussmann A, Tomek V, Malčić I, Grzyb A, Pavlova A, Kazamia K, Thakur V, Sinkovskaya E, Ten Harkel ADJ, Haak MC. The aorto-left ventricular tunnel from a fetal perspective: Original case series and literature review. Prenatal Diagnosis. 42: 267-277. PMID 35018638 DOI: 10.1002/pd.6090  0.037
2021 Preisler B, Pezeshkpoor B, Banchev A, Fischer R, Zieger B, Scholz U, Rühl H, Kemkes-Matthes B, Schmitt U, Redlich A, Unal S, Laws HJ, Olivieri M, Oldenburg J, Pavlova A. Familial Multiple Coagulation Factor Deficiencies (FMCFDs) in a Large Cohort of Patients-A Single-Center Experience in Genetic Diagnosis. Journal of Clinical Medicine. 10. PMID 33477601 DOI: 10.3390/jcm10020347  0.036
2024 Preisler B, Pezeshkpoor B, Merzenich A, Ohlenforst S, Rühl H, Ivaškevičius V, Scholz U, Bönigk H, Eberl W, Zieger B, Pavlova A, Oldenburg J. Genetic Landscape of Factor VII Deficiency: Insights from a Comprehensive Analysis of Pathogenic Variants and Their Impact on Coagulation Activity. International Journal of Molecular Sciences. 25. PMID 38397060 DOI: 10.3390/ijms25042384  0.036
2021 Liesner RJ, Abraham A, Altisent C, Belletrutti MJ, Carcao M, Carvalho M, Chambost H, Chan AKC, Dubey L, Ducore J, Gattens M, Gresele P, Gruel Y, Guillet B, Jimenez-Yuste V, ... ... Pavlova A, et al. Simoctocog Alfa (Nuwiq) in Previously Untreated Patients with Severe Haemophilia A: Final Results of the NuProtect Study. Thrombosis and Haemostasis. PMID 33581698 DOI: 10.1055/s-0040-1722623  0.036
2010 Pavlová A, Cernák J, Harms K. catena-Poly[[[diaqua-(di-2-pyridylamine-κN,N')nickel(II)]-μ-fumarato-κO:O] tetra-hydrate]. Acta Crystallographica. Section E, Structure Reports Online. 66: m501-2. PMID 21579002 DOI: 10.1107/S1600536810012225  0.034
2006 Astermark J, Oldenburg J, Carlson J, Pavlova A, Kavakli K, Berntorp E, Lefvert AK. Polymorphisms in the TNFA gene and the risk of inhibitor development in patients with hemophilia A. Blood. 108: 3739-45. PMID 16926287 DOI: 10.1182/blood-2006-05-024711  0.031
2024 Zadvornyi T, Lukianova N, Mushii O, Pavlova A, Voronina O, Chekhun V. Benign and malignant prostate neoplasms show different spatial organization of collagen. Croatian Medical Journal. 64: 413-420. PMID 38168522 DOI: 10.3325/cmj.2023.64.413  0.029
2014 Luxembourg B, Pavlova A, Geisen C, Spannagl M, Bergmann F, Krause M, Alesci S, Seifried E, Lindhoff-Last E. Impact of the type of SERPINC1 mutation and subtype of antithrombin deficiency on the thrombotic phenotype in hereditary antithrombin deficiency. Thrombosis and Haemostasis. 111: 249-57. PMID 24196373 DOI: 10.1160/TH13-05-0402  0.029
2023 Bader CS, Pavlova A, Lowsky R, Muffly L, Shiraz P, Arai S, Johnston LJ, Rezvani AR, Weng WK, Miklos DB, Frank MJ, Tamaresis JS, Agrawal V, Bharadwaj S, Sidana S, et al. Single Center Randomized Trial of T-reg graft alone versus T-reg graft Plus Tacrolimus for the Prevention of Acute GVHD. Blood Advances. PMID 38091578 DOI: 10.1182/bloodadvances.2023011625  0.029
2013 Pavlova A. F8 gene and phenotype: single player in a team? Blood. 121: 3784-5. PMID 23660857 DOI: 10.1182/blood-2013-03-491761  0.022
2023 Singh S, Pezeshkpoor B, Jamil MA, Dodt J, Sharma A, Ramar V, Ivaskevicius V, Hethershaw E, Philippou H, Pavlova A, Oldenburg J, Biswas A. Heterozygosity in FXIII genes and the manifestation of mild inherited FXIII Deficiency. Journal of Thrombosis and Haemostasis : Jth. PMID 37832789 DOI: 10.1016/j.jtha.2023.09.032  0.019
2020 Ipatova MG, Deordieva EA, Shvets OA, Mukhina AA, Moiseeva AA, Rodina YA, Shumilov PV, Pavlova AV, Raikina EV, Asanov AY, Litvinova MM, Shcherbina AY. Genetic and Clinical Features of Shwachman-Diamond Syndrome in Russian Population: Prospective Study Current Pediatrics. 18: 393-400. DOI: 10.15690/VSP.V18I5.2057  0.018
2023 Weaver L, Pavlova A, Lunden M, Brunsvold ME, Kendrick D. Are COVID-Era General Surgery Interns Starting Residency Behind on Basic Surgical Skills? Journal of Surgical Education. PMID 37563000 DOI: 10.1016/j.jsurg.2023.07.010  0.016
2016 Vodnala M, Ranjbarian F, Pavlova A, de Koning HP, Hofer A. Trypanosoma brucei methylthioadenosine phosphorylase protects the parasite from the antitrypanosomal effect of deoxyadenosine: implications for the pharmacology of adenosine antimetabolites. The Journal of Biological Chemistry. PMID 27036940 DOI: 10.1074/jbc.M116.715615  0.015
2019 Banchev A, Stoyanova D, Konstantinov D, Ignatova I, Peteva E, Kaleva V, Kostova S, Petkova N, Dineva A, Pavlova A. Beyond the bleeding rates- HEAD-US joint assessment in patients treated by late prophylaxis. Haemophilia : the Official Journal of the World Federation of Hemophilia. PMID 31131971 DOI: 10.1111/hae.13771  0.011
2019 Bachelet D, Albert T, Mbogning C, Hässler S, Zhang Y, Schultze-Strasser S, Repessé Y, Rayes J, Pavlova A, Pezeshkpoor B, Liphardt K, Davidson JE, Hincelin-Méry A, Dönnes P, Lacroix-Desmazes S, et al. Risk stratification integrating genetic data for factor VIII inhibitor development in patients with severe hemophilia A. Plos One. 14: e0218258. PMID 31194850 DOI: 10.1371/journal.pone.0218258  0.01
2019 Мухина А, Muhina A, Павлова А, Pavlova A, Самкина К, Samkina K, Белова О, Belova O. Stress As an Element of Workers’ Instability and a Source of Inefficiency of Organization Management of the Personnel and Intellectual Resources in Russia. 8: 67-73. DOI: 10.12737/ARTICLE_5D1DBE0617ECB4.33768600  0.01
2007 Pavlova A, Oldenburg J. GENETIC BASIS OF ACQUIRED HAEMOPHILIA Journal of Thrombosis and Haemostasis. 5: P-W-202-P-W-202. DOI: 10.1111/j.1538-7836.2007.tb02761.x  0.01
2002 Djourdjev BA, Pavlova AK. Intensive rehabilitation of a knee joint in hemophilic patients--a preliminary study. Folia Medica. 44: 40-4. PMID 12422626  0.01
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