Ray Luo - Publications

University of California, Los Angeles, Los Angeles, CA 
Computational Neuroscience, Synaptic Physiology, fMRI, Computer Vision, Motor Control

22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Wang W, Jiang C, Zhang J, Ye W, Luo R, Chen HF. Dynamics Correlation Network for Allosteric Switching of PreQ1 Riboswitch. Scientific Reports. 6: 31005. PMID 27484311 DOI: 10.1038/srep31005  0.56
2016 Yang J, Liu H, Liu X, Gu C, Luo R, Chen HF. Synergistic Allosteric Mechanism of Fructose-1,6-bisphosphate and Serine for Pyruvate Kinase M2 via Dynamics Fluctuation Network Analysis. Journal of Chemical Information and Modeling. PMID 27227511 DOI: 10.1021/acs.jcim.6b00115  0.56
2016 Xiao L, Wang C, Ye X, Luo R. Charge Central Interpretation of the Full Nonlinear PB Equation: Implications for Accurate and Scalable Modeling of Solvation Interactions. The Journal of Physical Chemistry. B. PMID 27146097 DOI: 10.1021/acs.jpcb.6b04439  0.56
2015 Botello-Smith WM, Luo R. Applications of MMPBSA to Membrane Proteins I: Efficient Numerical Solutions of Periodic Poisson-Boltzmann Equation. Journal of Chemical Information and Modeling. 55: 2187-99. PMID 26389966 DOI: 10.1021/acs.jcim.5b00341  0.56
2015 Ye W, Ji D, Wang W, Luo R, Chen HF. Test and Evaluation of ff99IDPs Force Field for Intrinsically Disordered Proteins. Journal of Chemical Information and Modeling. 55: 1021-9. PMID 25919886 DOI: 10.1021/acs.jcim.5b00043  0.56
2012 Dellal SS, Luo R, Otis TS. GABAA receptors increase excitability and conduction velocity of cerebellar parallel fiber axons. Journal of Neurophysiology. 107: 2958-70. PMID 22378171 DOI: 10.1152/jn.01028.2011  0.6
2011 Yang T, Wu JC, Yan C, Wang Y, Luo R, Gonzales MB, Dalby KN, Ren P. Virtual screening using molecular simulations. Proteins. 79: 1940-51. PMID 21491494 DOI: 10.1002/prot.23018  0.56
2009 Bradley J, Luo R, Otis TS, DiGregorio DA. Submillisecond optical reporting of membrane potential in situ using a neuronal tracer dye. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 29: 9197-209. PMID 19625510 DOI: 10.1523/JNEUROSCI.1240-09.2009  0.6
2007 Chen HF, Luo R. Binding induced folding in p53-MDM2 complex. Journal of the American Chemical Society. 129: 2930-7. PMID 17302414 DOI: 10.1021/ja0678774  0.56
2006 Lwin TZ, Luo R. Force field influences in beta-hairpin folding simulations. Protein Science : a Publication of the Protein Society. 15: 2642-55. PMID 17075138 DOI: 10.1110/ps.062438006  0.56
2006 Danziger SA, Swamidass SJ, Zeng J, Dearth LR, Lu Q, Chen JH, Cheng J, Hoang VP, Saigo H, Luo R, Baldi P, Brachmann RK, Lathrop RH. Functional census of mutation sequence spaces: the example of p53 cancer rescue mutants. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 3: 114-25. PMID 17048398 DOI: 10.1109/TCBB.2006.22  0.56
2006 Yang L, Tan CH, Hsieh MJ, Wang J, Duan Y, Cieplak P, Caldwell J, Kollman PA, Luo R. New-generation amber united-atom force field. The Journal of Physical Chemistry. B. 110: 13166-76. PMID 16805629 DOI: 10.1021/jp060163v  0.56
2006 Lwin TZ, Zhou R, Luo R. Is Poisson-Boltzmann theory insufficient for protein folding simulations? The Journal of Chemical Physics. 124: 034902. PMID 16438609 DOI: 10.1063/1.2161202  0.56
2005 Lwin TZ, Luo R. Overcoming entropic barrier with coupled sampling at dual resolutions. The Journal of Chemical Physics. 123: 194904. PMID 16321110 DOI: 10.1063/1.2102871  0.56
2005 Case DA, Cheatham TE, Darden T, Gohlke H, Luo R, Merz KM, Onufriev A, Simmerling C, Wang B, Woods RJ. The Amber biomolecular simulation programs. Journal of Computational Chemistry. 26: 1668-88. PMID 16200636 DOI: 10.1002/jcc.20290  0.56
2004 Wen EZ, Hsieh MJ, Kollman PA, Luo R. Enhanced ab initio protein folding simulations in Poisson-Boltzmann molecular dynamics with self-guiding forces. Journal of Molecular Graphics & Modelling. 22: 415-24. PMID 15099837 DOI: 10.1016/j.jmgm.2003.12.008  0.56
2003 Duan Y, Wu C, Chowdhury S, Lee MC, Xiong G, Zhang W, Yang R, Cieplak P, Luo R, Lee T, Caldwell J, Wang J, Kollman P. A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations. Journal of Computational Chemistry. 24: 1999-2012. PMID 14531054 DOI: 10.1002/jcc.10349  0.56
2003 Lu Q, Luo R. A Poisson-Boltzmann dynamics method with nonperiodic boundary condition Journal of Chemical Physics. 119: 11035-11047. DOI: 10.1063/1.1622376  0.56
2002 Luo R, David L, Gilson MK. Accelerated Poisson-Boltzmann calculations for static and dynamic systems. Journal of Computational Chemistry. 23: 1244-53. PMID 12210150 DOI: 10.1002/jcc.10120  0.6
2001 Wang W, Lim WA, Jakalian A, Wang J, Wang J, Luo R, Bayly CI, Kollman PA. An analysis of the interactions between the Sem-5 SH3 domain and its ligands using molecular dynamics, free energy calculations, and sequence analysis. Journal of the American Chemical Society. 123: 3986-94. PMID 11457149 DOI: 10.1021/ja003164o  0.56
2001 David L, Luo R, Gilson MK. Ligand-receptor docking with the Mining Minima optimizer Journal of Computer-Aided Molecular Design. 15: 157-171. PMID 11272702 DOI: 10.1023/A:1008128723048  0.56
2000 Mardis K, Luo R, David L, Potter M, Glemza A, Payne G, Gilson MK. Modeling molecular recognition: Theory and application Journal of Biomolecular Structure and Dynamics. 17: 89-94. DOI: 10.1080/07391102.2000.10506608  0.56
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