| Year |
Citation |
Score |
| 2022 |
Tirnaz S, Miyaji N, Takuno S, Bayer PE, Shimizu M, Akter MA, Edwards D, Batley J, Fujimoto R. Whole-Genome DNA Methylation Analysis in subsp. in Response to Infection. Frontiers in Plant Science. 13: 849358. PMID 35812966 DOI: 10.3389/fpls.2022.849358 |
0.46 |
|
| 2020 |
Espinas NA, Tu LN, Furci L, Shimajiri Y, Harukawa Y, Miura S, Takuno S, Saze H. Transcriptional regulation of genes bearing intronic heterochromatin in the rice genome. Plos Genetics. 16: e1008637. PMID 32187179 DOI: 10.1371/Journal.Pgen.1008637 |
0.528 |
|
| 2019 |
Takuno S, Miyagi R, Onami JI, Takahashi-Kariyazono S, Sato A, Tichy H, Nikaido M, Aibara M, Mizoiri S, Mrosso HDJ, Mzighani SI, Okada N, Terai Y. Patterns of genomic differentiation between two Lake Victoria cichlid species, Haplochromis pyrrhocephalus and H. sp. 'macula'. Bmc Evolutionary Biology. 19: 68. PMID 30832572 DOI: 10.1186/S12862-019-1387-2 |
0.333 |
|
| 2019 |
Horvath R, Laenen B, Takuno S, Slotte T. Single-cell expression noise and gene-body methylation in Arabidopsis thaliana. Heredity. PMID 30651589 DOI: 10.1038/S41437-018-0181-Z |
0.516 |
|
| 2018 |
Takahashi S, Osabe K, Fukushima N, Takuno S, Miyaji N, Shimizu M, Takasaki-Yasuda T, Suzuki Y, Dennis ES, Seki M, Fujimoto R. Genome-wide characterization of DNA methylation, small RNA expression, and histone H3 lysine nine di-methylation in Brassica rapa L. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 29982343 DOI: 10.1093/Dnares/Dsy021 |
0.489 |
|
| 2018 |
Akita T, Takuno S, Innan H. Coalescent framework for prokaryotes undergoing interspecific homologous recombination. Heredity. PMID 29358726 DOI: 10.1038/S41437-017-0034-1 |
0.358 |
|
| 2017 |
Takuno S, Seymour DK, Gaut BS. The evolutionary dynamics of orthologs that shift in gene body methylation between Arabidopsis species. Molecular Biology and Evolution. PMID 28333248 DOI: 10.1093/Molbev/Msx099 |
0.75 |
|
| 2016 |
Takuno S, Ran JH, Gaut BS. Evolutionary patterns of genic DNA methylation vary across land plants. Nature Plants. 2: 15222. PMID 27249194 DOI: 10.1038/Nplants.2015.222 |
0.743 |
|
| 2016 |
Roessler K, Takuno S, Gaut BS. CG Methylation Covaries with Differential Gene Expression between Leaf and Floral Bud Tissues of Brachypodium distachyon. Plos One. 11: e0150002. PMID 26950546 DOI: 10.1371/Journal.Pone.0150002 |
0.734 |
|
| 2015 |
Bousios A, Diez CM, Takuno S, Bystry V, Darzentas N, Gaut BS. A role for palindromic structures in the cis-region of maize Sirevirus LTRs in transposable element evolution and host epigenetic response. Genome Research. PMID 26631490 DOI: 10.1101/Gr.193763.115 |
0.679 |
|
| 2015 |
Takuno S, Ralph P, Swarts K, Elshire RJ, Glaubitz JC, Buckler ES, Hufford MB, Ross-Ibarra J. Independent Molecular Basis of Convergent Highland Adaptation in Maize. Genetics. PMID 26078279 DOI: 10.1534/Genetics.115.178327 |
0.709 |
|
| 2015 |
Le TN, Miyazaki Y, Takuno S, Saze H. Epigenetic regulation of intragenic transposable elements impacts gene transcription in Arabidopsis thaliana. Nucleic Acids Research. 43: 3911-21. PMID 25813042 DOI: 10.1093/Nar/Gkv258 |
0.568 |
|
| 2014 |
Fawcett JA, Iida T, Takuno S, Sugino RP, Kado T, Kugou K, Mura S, Kobayashi T, Ohta K, Nakayama J, Innan H. Population genomics of the fission yeast Schizosaccharomyces pombe. Plos One. 9: e104241. PMID 25111393 DOI: 10.1371/Journal.Pone.0104241 |
0.449 |
|
| 2013 |
Fawcett JA, Kado T, Sasaki E, Takuno S, Yoshida K, Sugino RP, Kosugi S, Natsume S, Mitsuoka C, Uemura A, Takagi H, Abe A, Ishii T, Terauchi R, Innan H. QTL map meets population genomics: an application to rice. Plos One. 8: e83720. PMID 24376738 DOI: 10.1371/Journal.Pone.0083720 |
0.49 |
|
| 2013 |
Suzuki MM, Yoshinari A, Obara M, Takuno S, Shigenobu S, Sasakura Y, Kerr AR, Webb S, Bird A, Nakayama A. Identical sets of methylated and nonmethylated genes in Ciona intestinalis sperm and muscle cells. Epigenetics & Chromatin. 6: 38. PMID 24279449 DOI: 10.1186/1756-8935-6-38 |
0.564 |
|
| 2013 |
Fang Z, Eule-Nashoba A, Powers C, Kono TY, Takuno S, Morrell PL, Smith KP. Comparative analyses identify the contributions of exotic donors to disease resistance in a barley experimental population. G3 (Bethesda, Md.). 3: 1945-53. PMID 24048643 DOI: 10.1534/G3.113.007294 |
0.371 |
|
| 2013 |
Wills DM, Whipple CJ, Takuno S, Kursel LE, Shannon LM, Ross-Ibarra J, Doebley JF. From many, one: genetic control of prolificacy during maize domestication. Plos Genetics. 9: e1003604. PMID 23825971 DOI: 10.1371/Journal.Pgen.1003604 |
0.714 |
|
| 2013 |
Slotte T, Hazzouri KM, Ågren JA, Koenig D, Maumus F, Guo YL, Steige K, Platts AE, Escobar JS, Newman LK, Wang W, Mandáková T, Vello E, Smith LM, Henz SR, ... ... Takuno S, et al. The Capsella rubella genome and the genomic consequences of rapid mating system evolution. Nature Genetics. 45: 831-5. PMID 23749190 DOI: 10.1038/Ng.2669 |
0.722 |
|
| 2013 |
Takuno S, Gaut BS. Gene body methylation is conserved between plant orthologs and is of evolutionary consequence. Proceedings of the National Academy of Sciences of the United States of America. 110: 1797-802. PMID 23319627 DOI: 10.1073/Pnas.1215380110 |
0.76 |
|
| 2013 |
Takagi H, Abe A, Yoshida K, Kosugi S, Natsume S, Mitsuoka C, Uemura A, Utsushi H, Tamiru M, Takuno S, Innan H, Cano LM, Kamoun S, Terauchi R. QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations. The Plant Journal : For Cell and Molecular Biology. 74: 174-83. PMID 23289725 DOI: 10.1111/Tpj.12105 |
0.445 |
|
| 2012 |
Akita T, Takuno S, Innan H. Modeling evolutionary growth of a microRNA-mediated regulation system. Journal of Theoretical Biology. 311: 54-65. PMID 22820491 DOI: 10.1016/J.Jtbi.2012.07.011 |
0.368 |
|
| 2012 |
Vonholdt BM, Takuno S, Gaut BS. Recent retrotransposon insertions are methylated and phylogenetically clustered in japonica rice (Oryza sativa spp. japonica). Molecular Biology and Evolution. 29: 3193-203. PMID 22593226 DOI: 10.1093/Molbev/Mss129 |
0.729 |
|
| 2012 |
Takuno S, Kado T, Sugino RP, Nakhleh L, Innan H. Population genomics in bacteria: a case study of Staphylococcus aureus. Molecular Biology and Evolution. 29: 797-809. PMID 22009061 DOI: 10.1093/Molbev/Msr249 |
0.406 |
|
| 2012 |
Takuno S, Gaut BS. Body-methylated genes in Arabidopsis thaliana are functionally important and evolve slowly. Molecular Biology and Evolution. 29: 219-27. PMID 21813466 DOI: 10.1093/Molbev/Msr188 |
0.735 |
|
| 2011 |
Asano K, Yamasaki M, Takuno S, Miura K, Katagiri S, Ito T, Doi K, Wu J, Ebana K, Matsumoto T, Innan H, Kitano H, Ashikari M, Matsuoka M. Artificial selection for a green revolution gene during japonica rice domestication. Proceedings of the National Academy of Sciences of the United States of America. 108: 11034-9. PMID 21646530 DOI: 10.1073/Pnas.1019490108 |
0.38 |
|
| 2011 |
Takuno S, Innan H. Selection fine-tunes the expression of microRNA target genes in Arabidopsis thaliana. Molecular Biology and Evolution. 28: 2429-34. PMID 21478371 DOI: 10.1093/Molbev/Msr084 |
0.419 |
|
| 2011 |
Yang L, Takuno S, Waters ER, Gaut BS. Lowly expressed genes in Arabidopsis thaliana bear the signature of possible pseudogenization by promoter degradation. Molecular Biology and Evolution. 28: 1193-203. PMID 21059790 DOI: 10.1093/Molbev/Msq298 |
0.708 |
|
| 2010 |
Takuno S, Oikawa E, Kitashiba H, Nishio T. Assessment of genetic diversity of accessions in Brassicaceae genetic resources by frequency distribution analysis of S haplotypes. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 120: 1129-38. PMID 20039015 DOI: 10.1007/S00122-009-1240-X |
0.374 |
|
| 2009 |
Takuno S, Innan H. Selection to maintain paralogous amino acid differences under the pressure of gene conversion in the heat-shock protein genes in yeast. Molecular Biology and Evolution. 26: 2655-9. PMID 19745001 DOI: 10.1093/Molbev/Msp211 |
0.45 |
|
| 2008 |
Takuno S, Nishio T, Satta Y, Innan H. Preservation of a pseudogene by gene conversion and diversifying selection. Genetics. 180: 517-31. PMID 18757945 DOI: 10.1534/Genetics.108.091918 |
0.466 |
|
| 2008 |
Fujimoto R, Takuno S, Sasaki T, Nishio T. The pattern of amplification and differentiation of Ty1-copia and Ty3-gypsy retrotransposons in Brassicaceae species. Genes & Genetic Systems. 83: 13-22. PMID 18379130 DOI: 10.1266/Ggs.83.13 |
0.41 |
|
| 2008 |
Takuno S, Innan H. Evolution of complexity in miRNA-mediated gene regulation systems. Trends in Genetics : Tig. 24: 56-9. PMID 18192068 DOI: 10.1016/J.Tig.2007.11.002 |
0.324 |
|
| 2007 |
Takuno S, Fujimoto R, Sugimura T, Sato K, Okamoto S, Zhang SL, Nishio T. Effects of recombination on hitchhiking diversity in the Brassica self-incompatibility locus complex. Genetics. 177: 949-58. PMID 17720932 DOI: 10.1534/Genetics.107.073825 |
0.358 |
|
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