| Year |
Citation |
Score |
| Low-probability matches (unlikely to be authored by this person) |
| 2024 |
Davis M, Simpson K, Diaz V, Alekseyenko AV. County Mammogram Uptake can be Predicted from Social Determinants of Health, but Patterns Do Not Hold for Individual Patients. Fortune Journal of Health Sciences. 7: 128-137. PMID 38651007 DOI: 10.26502/fjhs.171 |
0.01 |
|
| 2024 |
Browning BD, Kirkland AE, Green R, Liu H, Glover JS, Ticer TD, Engevik MA, Alekseyenko AV, Ferguson PL, Tomko RL, Squeglia LM. Adolescent alcohol use is associated with differences in the diversity and composition of the oral microbiome. Alcohol, Clinical & Experimental Research. PMID 38631877 DOI: 10.1111/acer.15331 |
0.01 |
|
| 2024 |
Seal S, Neelon B, Angel PM, O'Quinn EC, Hill E, Vu T, Ghosh D, Mehta AS, Wallace K, Alekseyenko AV. SpaceANOVA: Spatial Co-occurrence Analysis of Cell Types in Multiplex Imaging Data Using Point Process and Functional ANOVA. Journal of Proteome Research. PMID 38417823 DOI: 10.1021/acs.jproteome.3c00462 |
0.01 |
|
| 2023 |
Walton NA, Nagarajan R, Wang C, Sincan M, Freimuth RR, Everman DB, Walton DC, McGrath SP, Lemas DJ, Benos PV, Alekseyenko AV, Song Q, Gamsiz Uzun E, Taylor CO, Uzun A, et al. Enabling the clinical application of artificial intelligence in genomics: a perspective of the AMIA Genomics and Translational Bioinformatics Workgroup. Journal of the American Medical Informatics Association : Jamia. PMID 38037121 DOI: 10.1093/jamia/ocad211 |
0.01 |
|
| 2023 |
Mollalo A, Hamidi B, Lenert L, Alekseyenko AV. Characterizing Patient Phenotypes and Emerging Trends in Application of Spatial Analysis in Individual-Level Health Data. Research Square. PMID 37886509 DOI: 10.21203/rs.3.rs-3443865/v1 |
0.01 |
|
| 2023 |
Davis M, Simpson K, Lenert LA, Diaz V, Alekseyenko AV. Predicting Mammogram Screening Follow Through with Electronic Health Record and Geographically Linked Data. Cancer Research Communications. 3: 2126-2132. PMID 37782226 DOI: 10.1158/2767-9764.CRC-23-0263 |
0.01 |
|
| 2023 |
Hamidi B, Steed LL, Curry SR, Salgado CD, Alekseyenko AV. The hidden microbiome of hospital infection surveillance testing: biomarkers of health outcomes in MRSA and VRE colonization. Research Square. PMID 37693618 DOI: 10.21203/rs.3.rs-3299277/v1 |
0.01 |
|
| 2023 |
Davis M, Simpson K, Diaz V, Alekseyenko AV. Mammogram Uptake from Social Determinants of Health Can Be Lost in Translation to Individual Patients. Research Square. PMID 37693463 DOI: 10.21203/rs.3.rs-3298459/v1 |
0.01 |
|
| 2023 |
Ahmad W, Pishevar N, Cochrane LJ, Reynolds A, Kim J, Korostenskij I, Geiser VL, Carson MD, Warner AJ, Chen P, Yao H, Alekseyenko A, Hathaway-Schrader JD, Novince CM. Antibiotic prophylaxis dysregulates dental implant placement surgery-induced osteoimmune wound healing and attenuates the alveolar bone-implant interface in mice. Journal of Clinical Periodontology. PMID 37667415 DOI: 10.1111/jcpe.13875 |
0.01 |
|
| 2023 |
Browning BD, Kirkland AE, Green R, Engevik M, Alekseyenko AV, Leggio L, Tomko RL, Squeglia LM. The adolescent and young adult microbiome and its association with substance use: a scoping review. Alcohol and Alcoholism (Oxford, Oxfordshire). PMID 37665023 DOI: 10.1093/alcalc/agad055 |
0.01 |
|
| 2023 |
Oleinik N, Albayram O, Kassir MF, Atilgan FC, Walton C, Karakaya E, Kurtz J, Alekseyenko A, Alsudani H, Sheridan M, Szulc ZM, Ogretmen B. Alterations of lipid-mediated mitophagy result in aging-dependent sensorimotor defects. Aging Cell. e13954. PMID 37614052 DOI: 10.1111/acel.13954 |
0.01 |
|
| 2023 |
Seal S, Neelon B, Angel P, O'Quinn EC, Hill E, Vu T, Ghosh D, Mehta A, Wallace K, Alekseyenko AV. SpaceANOVA: Spatial co-occurrence analysis of cell types in multiplex imaging data using point process and functional ANOVA. Biorxiv : the Preprint Server For Biology. PMID 37461579 DOI: 10.1101/2023.07.06.548034 |
0.01 |
|
| 2023 |
Azzouz D, Chen Z, Izmirly PM, Chen LA, Li Z, Zhang C, Mieles D, Trujillo K, Heguy A, Pironti A, Putzel GG, Schwudke D, Fenyo D, Buyon JP, Alekseyenko AV, et al. Longitudinal gut microbiome analyses and blooms of pathogenic strains during lupus disease flares. Annals of the Rheumatic Diseases. PMID 37365013 DOI: 10.1136/ard-2023-223929 |
0.01 |
|
| 2023 |
Carson MD, Warner AJ, Geiser VL, Hathaway-Schrader JD, Alekseyenko AV, Marshall J, Westwater C, Novince CM. Prolonged antibiotic exposure during adolescence dysregulates liver metabolism and promotes adiposity in mice. The American Journal of Pathology. PMID 36906264 DOI: 10.1016/j.ajpath.2023.02.014 |
0.01 |
|
| 2023 |
Del Gaizo J, Obeid JS, Catchpole KR, Alekseyenko AV. Red Flag/Blue Flag visualization of a common CNN for text classification. Jamia Open. 6: ooac112. PMID 36660449 DOI: 10.1093/jamiaopen/ooac112 |
0.01 |
|
| 2022 |
Carson MD, Warner AJ, Hathaway-Schrader JD, Geiser VL, Kim JD, Gerasco JE, Hill WD, Lemasters JJ, Alekseyenko AV, Wu Y, Yao H, Aguirre JI, Westwater C, Novince CM. Minocycline-induced disruption of the intestinal FXR-FGF15 axis impairs osteogenesis in mice. Jci Insight. PMID 36413391 DOI: 10.1172/jci.insight.160578 |
0.01 |
|
| 2022 |
Hamidi B, Flume PA, Simpson KN, Alekseyenko AV. Not all phenotypes are created equal: covariates of success in e-phenotype specification. Journal of the American Medical Informatics Association : Jamia. PMID 36069977 DOI: 10.1093/jamia/ocac157 |
0.01 |
|
| 2021 |
Pécot T, Alekseyenko A, Wallace K. A deep learning segmentation strategy that minimizes the amount of manually annotated images. F1000research. 10: 256. PMID 35136569 DOI: 10.12688/f1000research.52026.2 |
0.01 |
|
| 2021 |
Ritchie JB, Welch BM, Allen CG, Frey LJ, Morrison H, Schiffman JD, Alekseyenko AV, Dean B, Hughes Halbert C, Bellcross C. Comparison of a Cancer Family History Collection and Risk Assessment Tool - ItRunsInMyFamily - with Risk Assessment by Health-Care Professionals. Public Health Genomics. 1-9. PMID 34872100 DOI: 10.1159/000520001 |
0.01 |
|
| 2021 |
Swanson BA, Carson MD, Hathaway-Schrader JD, Warner AJ, Kirkpatrick JE, Corker A, Alekseyenko AV, Westwater C, Aguirre JI, Novince CM. Antimicrobial-induced oral dysbiosis exacerbates naturally occurring alveolar bone loss. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 35: e22015. PMID 34699641 DOI: 10.1096/fj.202101169R |
0.01 |
|
| 2021 |
Meystre SM, Heider PM, Kim Y, Davis M, Obeid J, Madory J, Alekseyenko AV. Natural Language Processing Enabling COVID-19 Predictive Analytics to Support Data-Driven Patient Advising and Pooled Testing. Journal of the American Medical Informatics Association : Jamia. PMID 34415311 DOI: 10.1093/jamia/ocab186 |
0.01 |
|
| 2021 |
Wallace K, El Nahhas GJ, Bookhout C, Thaxton JE, Lewin DN, Nikolaishvili-Feinberg N, Cohen SM, Brazeal JG, Hill EG, Wu JD, Baron JA, Alekseyenko AV. Immune responses vary in preinvasive colorectal lesions by tumor location and histology. Cancer Prevention Research (Philadelphia, Pa.). PMID 34341013 DOI: 10.1158/1940-6207.CAPR-20-0592 |
0.01 |
|
| 2021 |
De Maio N, Alekseyenko AV, Coleman-Smith WJ, Pardi F, Suchard MA, Tamuri AU, Truszkowski J, Goldman N. A phylogenetic approach for weighting genetic sequences. Bmc Bioinformatics. 22: 285. PMID 34049487 DOI: 10.1186/s12859-021-04183-8 |
0.01 |
|
| 2021 |
Wallace K, Nahhas GJ, Bookhout C, Lewin DN, Paulos CM, Nikolaishvili-Feinberg N, Cohen SM, Guglietta S, Bakhtiari A, Camp ER, Hill EG, Baron JA, Wu JD, Alekseyenko AV. Preinvasive Colorectal Lesions of African Americans Display an Immunosuppressive Signature Compared to Caucasian Americans. Frontiers in Oncology. 11: 659036. PMID 33987094 DOI: 10.3389/fonc.2021.659036 |
0.01 |
|
| 2021 |
Del Gaizo J, Catchpole KR, Alekseyenko AV. Research and Exploratory Analysis Driven-Time-data Visualization (read-tv) software. Jamia Open. 4: ooab007. PMID 33709063 DOI: 10.1093/jamiaopen/ooab007 |
0.01 |
|
| 2021 |
Alfred MC, Cohen TN, Cohen KA, Kanji FF, Choi E, Del Gaizo J, Nemeth LS, Alekseyenko AV, Shouhed D, Savage SJ, Anger JT, Catchpole K. Using Flow Disruptions to Examine System Safety in Robotic-Assisted Surgery: Protocol for a Stepped Wedge Crossover Design. Jmir Research Protocols. 10: e25284. PMID 33560239 DOI: 10.2196/25284 |
0.01 |
|
| 2021 |
Sofi MH, Wu Y, Ticer T, Schutt S, Bastian D, Choi HJ, Tian L, Mealer C, Liu C, Westwater C, Armeson KE, Alekseyenko AV, Yu XZ. A single strain of Bacteroides fragilis protects gut integrity and reduces GVHD. Jci Insight. 6. PMID 33554953 DOI: 10.1172/jci.insight.136841 |
0.01 |
|
| 2021 |
Arbizu RA, Collins D, Wilson RC, Alekseyenko AV. Evidence for Differentiation of Colon Tissue Microbiota in Patients with and without Postoperative Hirschsprung's Associated Enterocolitis: A Pilot Study. Pediatric Gastroenterology, Hepatology & Nutrition. 24: 30-37. PMID 33505891 DOI: 10.5223/pghn.2021.24.1.30 |
0.01 |
|
| 2020 |
Luo Z, Alekseyenko AV, Ogunrinde E, Li M, Li QZ, Huang L, Tsao BP, Kamen DL, Oates JC, Li Z, Gilkeson GS, Jiang W. Rigorous Plasma Microbiome Analysis Method Enables Disease Association Discovery in Clinic. Frontiers in Microbiology. 11: 613268. PMID 33488555 DOI: 10.3389/fmicb.2020.613268 |
0.01 |
|
| 2020 |
Alekseyenko AV, Hamidi B, Faith TD, Crandall KA, Powers JG, Metts CL, Madory JE, Carroll SL, Obeid JS, Lenert LA. Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank. Journal of the American Medical Informatics Association : Jamia. PMID 33166379 DOI: 10.1093/jamia/ocaa236 |
0.01 |
|
| 2020 |
Sierra MA, Li Q, Pushalkar S, Paul B, Sandoval TA, Kamer AR, Corby P, Guo Y, Ruff RR, Alekseyenko AV, Li X, Saxena D. The Influences of Bioinformatics Tools and Reference Databases in Analyzing the Human Oral Microbial Community. Genes. 11. PMID 32756341 DOI: 10.3390/Genes11080878 |
0.01 |
|
| 2020 |
Sutherland VL, McQueen CA, Mendrick D, Gulezian D, Cerniglia C, Foley S, Forry S, Khare S, Liang X, Manautou JE, Tweedie D, Young H, Alekseyenko AV, Burns F, Dietert R, et al. The Gut Microbiome and Xenobiotics: Identifying Knowledge Gaps. Toxicological Sciences : An Official Journal of the Society of Toxicology. 176: 1-10. PMID 32658296 DOI: 10.1093/toxsci/kfaa060 |
0.01 |
|
| 2020 |
Wallace K, Li H, Brazeal JG, Lewin DN, Sun S, Ba A, Paulos CM, Rachidi S, Li Z, Alekseyenko AV. Platelet and hemoglobin count at diagnosis are associated with survival in African American and Caucasian patients with colorectal cancer. Cancer Epidemiology. 67: 101746. PMID 32521488 DOI: 10.1016/J.Canep.2020.101746 |
0.01 |
|
| 2019 |
He Y, Wang H, Zheng J, Beiting DP, Masci AM, Yu H, Liu K, Wu J, Curtis JL, Smith B, Alekseyenko AV, Obeid JS. OHMI: the ontology of host-microbiome interactions. Journal of Biomedical Semantics. 10: 25. PMID 31888755 DOI: 10.1186/S13326-019-0217-1 |
0.01 |
|
| 2019 |
Lobach I, Kim I, Alekseyenko A, Lobach S, Zhang L. A Simple Approximation to Bias in Gene-Environment Interaction Estimates When a Case Might Not Be the Case. Frontiers in Genetics. 10: 886. PMID 31681402 DOI: 10.3389/Fgene.2019.00886 |
0.01 |
|
| 2019 |
Silverman GJ, Azzouz DF, Alekseyenko AV. Systemic Lupus Erythematosus and dysbiosis in the microbiome: cause or effect or both? Current Opinion in Immunology. 61: 80-85. PMID 31590039 DOI: 10.1016/j.coi.2019.08.007 |
0.01 |
|
| 2019 |
Hamidi B, Wallace K, Alekseyenko AV. MODIMA, a Method for Multivariate Omnibus Distance Mediation Analysis, Allows for Integration of Multivariate Exposure-Mediator-Response Relationships. Genes. 10. PMID 31336807 DOI: 10.3390/Genes10070524 |
0.01 |
|
| 2019 |
Ogunrinde E, Zhou Z, Luo Z, Alekseyenko A, Li QZ, Macedo D, Kamen DL, Oates JC, Gilkeson GS, Jiang W. A link between plasma microbial translocation, microbiome, and autoantibody development in first-degree relatives of systemic lupus erythematosus patients. Arthritis & Rheumatology (Hoboken, N.J.). PMID 31106972 DOI: 10.1002/Art.40935 |
0.01 |
|
| 2019 |
Hamidi B, Wallace K, Vasu C, Alekseyenko AV. [Formula: see text]-test: robust distance-based multivariate analysis of variance. Microbiome. 7: 51. PMID 30935409 DOI: 10.1186/S40168-019-0659-9 |
0.01 |
|
| 2019 |
Rothenberg SE, Wagner CL, Hamidi B, Alekseyenko AV, Andrea Azcarate-Peril M. Longitudinal changes during pregnancy in gut microbiota and methylmercury biomarkers, and reversal of microbe-exposure correlations. Environmental Research. 172: 700-712. PMID 30903970 DOI: 10.1016/J.Envres.2019.01.014 |
0.01 |
|
| 2019 |
Lobach I, Kim I, Alekseyenko A, Lobach S, Zhang L. A simple approximation to bias in the genetic effect estimates when multiple disease states share a clinical diagnosis. Genetic Epidemiology. PMID 30888715 DOI: 10.1002/Gepi.22201 |
0.01 |
|
| 2019 |
Azzouz D, Omarbekova A, Heguy A, Schwudke D, Gisch N, Rovin BH, Caricchio R, Buyon JP, Alekseyenko AV, Silverman GJ. Lupus nephritis is linked to disease-activity associated expansions and immunity to a gut commensal. Annals of the Rheumatic Diseases. PMID 30782585 DOI: 10.1136/annrheumdis-2018-214856 |
0.01 |
|
| 2019 |
Luo Z, Li M, Wu Y, Meng Z, Martin L, Zhang L, Ogunrinde E, Zhou Z, Qin S, Wan Z, Westerink MAJ, Warth S, Liu H, Jin P, Stroncek D, ... ... Alekseyenko AV, et al. Systemic translocation of Staphylococcus drives autoantibody production in HIV disease. Microbiome. 7: 25. PMID 30764863 DOI: 10.1186/S40168-019-0646-1 |
0.01 |
|
| 2019 |
Hathaway-Schrader JD, Steinkamp HM, Chavez MB, Poulides NA, Kirkpatrick JE, Chew ME, Huang E, Alekseyenko AV, Aguirre JI, Novince CM. Antibiotic Perturbation of Gut Microbiota Dysregulates Osteoimmune Cross Talk in Postpubertal Skeletal Development. The American Journal of Pathology. PMID 30660331 DOI: 10.1016/J.Ajpath.2018.10.017 |
0.01 |
|
| 2019 |
Lobach I, Sampson J, Lobach S, Alekseyenko A, Piryatinska A, He T, Zhang L. A simple approximation to the bias of gene-environment interactions in case-control studies with silent disease. Genetic Epidemiology. PMID 30623487 DOI: 10.1002/Gepi.22186 |
0.01 |
|
| 2018 |
Landeros A, Stutz T, Keys KL, Alekseyenko A, Sinsheimer JS, Lange K, Sehl ME. BioSimulator.jl: Stochastic simulation in Julia. Computer Methods and Programs in Biomedicine. 167: 23-35. PMID 30501857 DOI: 10.1016/J.Cmpb.2018.09.009 |
0.01 |
|
| 2018 |
Xu W, Luo Z, Alekseyenko AV, Martin L, Wan Z, Ling B, Qin Z, Heath SL, Maas K, Cong X, Jiang W. Distinct systemic microbiome and microbial translocation are associated with plasma level of anti-CD4 autoantibody in HIV infection. Scientific Reports. 8: 12863. PMID 30150778 DOI: 10.1038/S41598-018-31116-Y |
0.01 |
|
| 2018 |
Lobach I, Sampson J, Alekseyenko A, Lobach S, Zhang L. Case-control studies of gene-environment interactions. When a case might not be the case. Plos One. 13: e0201140. PMID 30133451 DOI: 10.1371/Journal.Pone.0201140 |
0.01 |
|
| 2018 |
Wallace K, Lewin DN, Sun S, Spiceland CM, Rockey DC, Alekseyenko AV, Wu JD, Baron JA, Alberg AJ, Hill EG. Tumor Infiltrating Lymphocytes and Colorectal Cancer Survival in African American and Caucasian Patients. Cancer Epidemiology, Biomarkers & Prevention : a Publication of the American Association For Cancer Research, Cosponsored by the American Society of Preventive Oncology. PMID 29769214 DOI: 10.1158/1055-9965.Epi-17-0870 |
0.01 |
|
| 2018 |
Fan X, Peters BA, Jacobs EJ, Gapstur SM, Purdue MP, Freedman ND, Alekseyenko AV, Wu J, Yang L, Pei Z, Hayes RB, Ahn J. Drinking alcohol is associated with variation in the human oral microbiome in a large study of American adults. Microbiome. 6: 59. PMID 29685174 DOI: 10.1186/S40168-018-0448-X |
0.01 |
|
| 2017 |
Zhang Y, Alekseyenko AV. Phylogenic inference using alignment-free methods for applications in microbial community surveys using 16s rRNA gene. Plos One. 12: e0187940. PMID 29136663 DOI: 10.1371/journal.pone.0187940 |
0.01 |
|
| 2017 |
Beiko T, Janech MG, Alekseyenko AV, Atkinson C, Coxson HO, Barth JL, Stephenson SE, Wilson CL, Schnapp LM, Barker A, Brantly M, Sandhaus RA, Silverman EK, Stoller JK, Trapnell B, et al. Serum Proteins Associated with Emphysema Progression in Severe Alpha-1 Antitrypsin Deficiency. Chronic Obstructive Pulmonary Diseases (Miami, Fla.). 4: 204-216. PMID 28848932 DOI: 10.15326/Jcopdf.4.3.2016.0180 |
0.01 |
|
| 2016 |
Tang ZZ, Chen G, Alekseyenko AV, Li H. A general framework for association analysis of microbial communities on a taxonomic tree. Bioinformatics (Oxford, England). PMID 28003264 DOI: 10.1093/bioinformatics/btw804 |
0.01 |
|
| 2016 |
Iizumi T, Taniguchi T, Yamazaki W, Vilmen G, Alekseyenko AV, Gao Z, Perez Perez GI, Blaser MJ. Effect of antibiotic pre-treatment and pathogen challenge on the intestinal microbiota in mice. Gut Pathogens. 8: 60. PMID 27891184 DOI: 10.1186/S13099-016-0143-Z |
0.01 |
|
| 2016 |
Livanos AE, Greiner TU, Vangay P, Pathmasiri W, Stewart D, McRitchie S, Li H, Chung J, Sohn J, Kim S, Gao Z, Barber C, Kim J, Ng S, Rogers AB, ... ... Alekseyenko A, et al. Antibiotic-mediated gut microbiome perturbation accelerates development of type 1 diabetes in mice. Nature Microbiology. 1: 16140. PMID 27782139 DOI: 10.1038/Nmicrobiol.2016.140 |
0.01 |
|
| 2016 |
Fan X, Alekseyenko AV, Wu J, Peters BA, Jacobs EJ, Gapstur SM, Purdue MP, Abnet CC, Stolzenberg-Solomon R, Miller G, Ravel J, Hayes RB, Ahn J. Human oral microbiome and prospective risk for pancreatic cancer: a population-based nested case-control study. Gut. PMID 27742762 DOI: 10.1136/Gutjnl-2016-312580 |
0.01 |
|
| 2016 |
Gonzalez ME, Schaffer JV, Orlow SJ, Gao Z, Li H, Alekseyenko AV, Blaser MJ. Cutaneous microbiome effects of fluticasone propionate cream and adjunctive bleach baths in childhood atopic dermatitis. Journal of the American Academy of Dermatology. 75: 481-493.e8. PMID 27543211 DOI: 10.1016/J.Jaad.2016.04.066 |
0.01 |
|
| 2016 |
Alekseyenko AV. Multivariate Welch t-test on distances. Bioinformatics (Oxford, England). PMID 27515741 DOI: 10.1093/bioinformatics/btw524 |
0.01 |
|
| 2016 |
Tang ZZ, Chen G, Alekseyenko AV. PERMANOVA-S: Association test for microbial community composition that accommodates confounders and multiple distances. Bioinformatics (Oxford, England). PMID 27197815 DOI: 10.1093/bioinformatics/btw311 |
0.01 |
|
| 2016 |
Wu J, Peters BA, Dominianni C, Zhang Y, Pei Z, Yang L, Ma Y, Purdue MP, Jacobs EJ, Gapstur SM, Li H, Alekseyenko AV, Hayes RB, Ahn J. Cigarette smoking and the oral microbiome in a large study of American adults. The Isme Journal. PMID 27015003 DOI: 10.1038/Ismej.2016.37 |
0.01 |
|
| 2016 |
Zee BM, Alekseyenko AA, McElroy KA, Kuroda MI. Streamlined discovery of cross-linked chromatin complexes and associated histone modifications by mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. PMID 26831069 DOI: 10.1073/Pnas.1522750113 |
0.01 |
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| 2015 |
Attur M, Statnikov A, Samuels J, Li Z, Alekseyenko AV, Greenberg JD, Krasnokutsky S, Rybak L, Lu QA, Todd J, Zhou H, Jordan JM, Kraus VB, Aliferis CF, Abramson SB. Plasma levels of interleukin-1 receptor antagonist (IL1Ra) predict radiographic progression of symptomatic knee osteoarthritis. Osteoarthritis and Cartilage / Oars, Osteoarthritis Research Society. 23: 1915-24. PMID 26521737 DOI: 10.1016/J.Joca.2015.08.006 |
0.01 |
|
| 2015 |
Alekseyenko AA, Walsh EM, Wang X, Grayson AR, Hsi PT, Kharchenko PV, Kuroda MI, French CA. The oncogenic BRD4-NUT chromatin regulator drives aberrant transcription within large topological domains. Genes & Development. 29: 1507-23. PMID 26220994 DOI: 10.1101/Gad.267583.115 |
0.01 |
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| 2015 |
Nobel YR, Cox LM, Kirigin FF, Bokulich NA, Yamanishi S, Teitler I, Chung J, Sohn J, Barber CM, Goldfarb DS, Raju K, Abubucker S, Zhou Y, Ruiz VE, Li H, ... ... Alekseyenko AV, et al. Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment. Nature Communications. 6: 7486. PMID 26123276 DOI: 10.1038/Ncomms8486 |
0.01 |
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| 2015 |
Kang H, McElroy KA, Jung YL, Alekseyenko AA, Zee BM, Park PJ, Kuroda MI. Sex comb on midleg (Scm) is a functional link between PcG-repressive complexes in Drosophila. Genes & Development. 29: 1136-50. PMID 26063573 DOI: 10.1101/Gad.260562.115 |
0.01 |
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| 2015 |
Cohan CH, Neumann JT, Dave KR, Alekseyenko A, Binkert M, Stransky K, Lin HW, Barnes CA, Wright CB, Perez-Pinzon MA. Effect of cardiac arrest on cognitive impairment and hippocampal plasticity in middle-aged rats. Plos One. 10: e0124918. PMID 25933411 DOI: 10.1371/journal.pone.0124918 |
0.01 |
|
| 2015 |
Alekseyenko AA, McElroy KA, Kang H, Zee BM, Kharchenko PV, Kuroda MI. BioTAP-XL: Cross-linking/Tandem Affinity Purification to Study DNA Targets, RNA, and Protein Components of Chromatin-Associated Complexes. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. 109: 21.30.1-21.30.32. PMID 25559106 DOI: 10.1002/0471142727.Mb2130S109 |
0.01 |
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| 2014 |
Ho JW, Jung YL, Liu T, Alver BH, Lee S, Ikegami K, Sohn KA, Minoda A, Tolstorukov MY, Appert A, Parker SC, Gu T, Kundaje A, Riddle NC, Bishop E, ... ... Alekseyenko AA, et al. Comparative analysis of metazoan chromatin organization. Nature. 512: 449-52. PMID 25164756 DOI: 10.1038/Nature13415 |
0.01 |
|
| 2014 |
Cox LM, Yamanishi S, Sohn J, Alekseyenko AV, Leung JM, Cho I, Kim SG, Li H, Gao Z, Mahana D, Zárate Rodriguez JG, Rogers AB, Robine N, Loke P, Blaser MJ. Altering the intestinal microbiota during a critical developmental window has lasting metabolic consequences. Cell. 158: 705-21. PMID 25126780 DOI: 10.1016/J.Cell.2014.05.052 |
0.01 |
|
| 2014 |
Alekseyenko AA, Gorchakov AA, Zee BM, Fuchs SM, Kharchenko PV, Kuroda MI. Heterochromatin-associated interactions of Drosophila HP1a with dADD1, HIPP1, and repetitive RNAs. Genes & Development. 28: 1445-60. PMID 24990964 DOI: 10.1101/Gad.241950.114 |
0.01 |
|
| 2014 |
Alekseyenko AA, Gorchakov AA, Kharchenko PV, Kuroda MI. Reciprocal interactions of human C10orf12 and C17orf96 with PRC2 revealed by BioTAP-XL cross-linking and affinity purification. Proceedings of the National Academy of Sciences of the United States of America. 111: 2488-93. PMID 24550272 DOI: 10.1073/Pnas.1400648111 |
0.01 |
|
| 2014 |
Ferrari F, Alekseyenko AA, Park PJ, Kuroda MI. Transcriptional control of a whole chromosome: emerging models for dosage compensation. Nature Structural & Molecular Biology. 21: 118-25. PMID 24500429 DOI: 10.1038/Nsmb.2763 |
0.01 |
|
| 2014 |
Lin HW, Gresia VL, Stradecki HM, Alekseyenko A, Dezfulian C, Neumann JT, Dave KR, Perez-Pinzon MA. Protein kinase C delta modulates endothelial nitric oxide synthase after cardiac arrest. Journal of Cerebral Blood Flow and Metabolism : Official Journal of the International Society of Cerebral Blood Flow and Metabolism. 34: 613-20. PMID 24447953 DOI: 10.1038/jcbfm.2013.232 |
0.01 |
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| 2014 |
Argimón S, Konganti K, Chen H, Alekseyenko AV, Brown S, Caufield PW. Comparative genomics of oral isolates of Streptococcus mutans by in silico genome subtraction does not reveal accessory DNA associated with severe early childhood caries. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 21: 269-78. PMID 24291226 DOI: 10.1016/j.meegid.2013.11.003 |
0.01 |
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| 2014 |
Segal LN, Alekseyenko AV, Clemente JC, Kulkarni R, Wu B, Gao Z, Chen H, Berger KI, Goldring RM, Rom WN, Blaser MJ, Weiden MD. Correction to: Enrichment of lung microbiome with supraglottic taxa is associated with increased pulmonary inflammation [Microbiome, 1, (2013), 19] Microbiome. 2. DOI: 10.1186/2049-2618-2-21 |
0.01 |
|
| 2013 |
Statnikov A, Henaff M, Narendra V, Konganti K, Li Z, Yang L, Pei Z, Blaser MJ, Aliferis CF, Alekseyenko AV. A comprehensive evaluation of multicategory classification methods for microbiomic data. Microbiome. 1: 11. PMID 24456583 DOI: 10.1186/2049-2618-1-11 |
0.01 |
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| 2013 |
Alekseyenko AV, Perez-Perez GI, De Souza A, Strober B, Gao Z, Bihan M, Li K, Methé BA, Blaser MJ. Community differentiation of the cutaneous microbiota in psoriasis. Microbiome. 1: 31. PMID 24451201 DOI: 10.1186/2049-2618-1-31 |
0.01 |
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| 2013 |
Segal LN, Alekseyenko AV, Clemente JC, Kulkarni R, Wu B, Gao Z, Chen H, Berger KI, Goldring RM, Rom WN, Blaser MJ, Weiden MD. Enrichment of lung microbiome with supraglottic taxa is associated with increased pulmonary inflammation. Microbiome. 1: 19. PMID 24450871 DOI: 10.1186/2049-2618-1-19 |
0.01 |
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| 2013 |
Zhou Q, Ellison CE, Kaiser VB, Alekseyenko AA, Gorchakov AA, Bachtrog D. The epigenome of evolving Drosophila neo-sex chromosomes: dosage compensation and heterochromatin formation. Plos Biology. 11: e1001711. PMID 24265597 DOI: 10.1371/Journal.Pbio.1001711 |
0.01 |
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| 2013 |
Ferrari F, Plachetka A, Alekseyenko AA, Jung YL, Ozsolak F, Kharchenko PV, Park PJ, Kuroda MI. "Jump start and gain" model for dosage compensation in Drosophila based on direct sequencing of nascent transcripts. Cell Reports. 5: 629-36. PMID 24183666 DOI: 10.1016/J.Celrep.2013.09.037 |
0.01 |
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| 2013 |
Statnikov A, Alekseyenko AV, Li Z, Henaff M, Perez-Perez GI, Blaser MJ, Aliferis CF. Microbiomic signatures of psoriasis: feasibility and methodology comparison. Scientific Reports. 3: 2620. PMID 24018484 DOI: 10.1038/Srep02620 |
0.01 |
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| 2013 |
Alekseyenko AA, Ellison CE, Gorchakov AA, Zhou Q, Kaiser VB, Toda N, Walton Z, Peng S, Park PJ, Bachtrog D, Kuroda MI. Conservation and de novo acquisition of dosage compensation on newly evolved sex chromosomes in Drosophila. Genes & Development. 27: 853-8. PMID 23630075 DOI: 10.1101/Gad.215426.113 |
0.01 |
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| 2013 |
Ferrari F, Jung YL, Kharchenko PV, Plachetka A, Alekseyenko AA, Kuroda MI, Park PJ. Comment on "Drosophila dosage compensation involves enhanced Pol II recruitment to male X-linked promoters". Science (New York, N.Y.). 340: 273. PMID 23599463 DOI: 10.1126/Science.1231815 |
0.01 |
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| 2013 |
Argimón S, Alekseyenko AV, DeSalle R, Caufield PW. Phylogenetic analysis of glucosyltransferases and implications for the coevolution of mutans streptococci with their mammalian hosts. Plos One. 8: e56305. PMID 23457545 DOI: 10.1371/journal.pone.0056305 |
0.01 |
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| 2013 |
Bai JP, Alekseyenko AV, Statnikov A, Wang IM, Wong PH. Strategic applications of gene expression: from drug discovery/development to bedside. The Aaps Journal. 15: 427-37. PMID 23319288 DOI: 10.1208/s12248-012-9447-1 |
0.01 |
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| 2013 |
Redel H, Gao Z, Li H, Alekseyenko AV, Zhou Y, Perez-Perez GI, Weinstock G, Sodergren E, Blaser MJ. Quantitation and composition of cutaneous microbiota in diabetic and nondiabetic men. The Journal of Infectious Diseases. 207: 1105-14. PMID 23300163 DOI: 10.1093/Infdis/Jit005 |
0.01 |
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| 2013 |
Wang CI, Alekseyenko AA, LeRoy G, Elia AE, Gorchakov AA, Britton LM, Elledge SJ, Kharchenko PV, Garcia BA, Kuroda MI. Chromatin proteins captured by ChIP-mass spectrometry are linked to dosage compensation in Drosophila. Nature Structural & Molecular Biology. 20: 202-9. PMID 23295261 DOI: 10.1038/Nsmb.2477 |
0.01 |
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| 2013 |
Cox LM, Cho I, Young SA, Anderson WH, Waters BJ, Hung SC, Gao Z, Mahana D, Bihan M, Alekseyenko AV, Methé BA, Blaser MJ. The nonfermentable dietary fiber hydroxypropyl methylcellulose modulates intestinal microbiota. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 27: 692-702. PMID 23154883 DOI: 10.1096/Fj.12-219477 |
0.01 |
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| 2012 |
Riddle NC, Jung YL, Gu T, Alekseyenko AA, Asker D, Gui H, Kharchenko PV, Minoda A, Plachetka A, Schwartz YB, Tolstorukov MY, Kuroda MI, Pirrotta V, Karpen GH, Park PJ, et al. Enrichment of HP1a on Drosophila chromosome 4 genes creates an alternate chromatin structure critical for regulation in this heterochromatic domain. Plos Genetics. 8: e1002954. PMID 23028361 DOI: 10.1371/Journal.Pgen.1002954 |
0.01 |
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| 2012 |
Bouckaert R, Lemey P, Dunn M, Greenhill SJ, Alekseyenko AV, Drummond AJ, Gray RD, Suchard MA, Atkinson QD. Mapping the origins and expansion of the Indo-European language family. Science (New York, N.Y.). 337: 957-60. PMID 22923579 DOI: 10.1126/Science.1219669 |
0.01 |
|
| 2012 |
Cho I, Yamanishi S, Cox L, Methé BA, Zavadil J, Li K, Gao Z, Mahana D, Raju K, Teitler I, Li H, Alekseyenko AV, Blaser MJ. Antibiotics in early life alter the murine colonic microbiome and adiposity. Nature. 488: 621-6. PMID 22914093 DOI: 10.1038/Nature11400 |
0.01 |
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| 2012 |
Schwartz YB, Linder-Basso D, Kharchenko PV, Tolstorukov MY, Kim M, Li HB, Gorchakov AA, Minoda A, Shanower G, Alekseyenko AA, Riddle NC, Jung YL, Gu T, Plachetka A, Elgin SC, et al. Nature and function of insulator protein binding sites in the Drosophila genome. Genome Research. 22: 2188-98. PMID 22767387 DOI: 10.1101/Gr.138156.112 |
0.01 |
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| 2012 |
Pei A, Li H, Oberdorf WE, Alekseyenko AV, Parsons T, Yang L, Gerz EA, Lee P, Xiang C, Nossa CW, Pei Z. Diversity of 5S rRNA genes within individual prokaryotic genomes. Fems Microbiology Letters. 335: 11-8. PMID 22765222 DOI: 10.1111/j.1574-6968.2012.02632.x |
0.01 |
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| 2012 |
Alekseyenko AA, Ho JW, Peng S, Gelbart M, Tolstorukov MY, Plachetka A, Kharchenko PV, Jung YL, Gorchakov AA, Larschan E, Gu T, Minoda A, Riddle NC, Schwartz YB, Elgin SC, et al. Sequence-specific targeting of dosage compensation in Drosophila favors an active chromatin context. Plos Genetics. 8: e1002646. PMID 22570616 DOI: 10.1371/Journal.Pgen.1002646 |
0.01 |
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| 2012 |
Dezfulian C, Alekseyenko A, Dave KR, Raval AP, Do R, Kim F, Perez-Pinzon MA. Nitrite therapy is neuroprotective and safe in cardiac arrest survivors. Nitric Oxide : Biology and Chemistry / Official Journal of the Nitric Oxide Society. 26: 241-50. PMID 22484664 DOI: 10.1016/j.niox.2012.03.007 |
0.01 |
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| 2012 |
Baele G, Lemey P, Bedford T, Rambaut A, Suchard MA, Alekseyenko AV. Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty. Molecular Biology and Evolution. 29: 2157-67. PMID 22403239 DOI: 10.1093/Molbev/Mss084 |
0.01 |
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| 2012 |
Ho JWK, Alekseyenko AA, Kuroda MI, Park PJ. Genome-Wide Mapping of Protein-DNA Interactions by ChIP-Seq Tag-Based Next Generation Sequencing. 139-151. DOI: 10.1002/9783527644582.ch9 |
0.01 |
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| 2011 |
Simon MD, Wang CI, Kharchenko PV, West JA, Chapman BA, Alekseyenko AA, Borowsky ML, Kuroda MI, Kingston RE. The genomic binding sites of a noncoding RNA. Proceedings of the National Academy of Sciences of the United States of America. 108: 20497-502. PMID 22143764 DOI: 10.1073/Pnas.1113536108 |
0.01 |
|
| 2011 |
Aliferis CF, Alekseyenko AV, Aphinyanaphongs Y, Brown S, Fenyo D, Fu L, Shen S, Statnikov A, Wang J. Trends and developments in bioinformatics in 2010: prospects and perspectives. Yearbook of Medical Informatics. 6: 146-55. PMID 21938341 |
0.01 |
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| 2011 |
Alekseyenko AV, Lytkin NI, Ai J, Ding B, Padyukov L, Aliferis CF, Statnikov A. Causal graph-based analysis of genome-wide association data in rheumatoid arthritis. Biology Direct. 6: 25. PMID 21592391 DOI: 10.1186/1745-6150-6-25 |
0.01 |
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| 2011 |
DeSantis TZ, Keller K, Karaoz U, Alekseyenko AV, Singh NN, Brodie EL, Pei Z, Andersen GL, Larsen N. Simrank: Rapid and sensitive general-purpose k-mer search tool. Bmc Ecology. 11: 11. PMID 21524302 DOI: 10.1186/1472-6785-11-11 |
0.01 |
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| 2011 |
Deriano L, Chaumeil J, Coussens M, Multani A, Chou Y, Alekseyenko AV, Chang S, Skok JA, Roth DB. The RAG2 C terminus suppresses genomic instability and lymphomagenesis. Nature. 471: 119-23. PMID 21368836 DOI: 10.1038/Nature09755 |
0.01 |
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| 2011 |
Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, et al. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 471: 480-5. PMID 21179089 DOI: 10.1038/Nature09725 |
0.01 |
|
| 2011 |
Riddle NC, Minoda A, Kharchenko PV, Alekseyenko AA, Schwartz YB, Tolstorukov MY, Gorchakov AA, Jaffe JD, Kennedy C, Linder-Basso D, Peach SE, Shanower G, Zheng H, Kuroda MI, Pirrotta V, et al. Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin. Genome Research. 21: 147-63. PMID 21177972 DOI: 10.1101/Gr.110098.110 |
0.01 |
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| 2011 |
Egelhofer TA, Minoda A, Klugman S, Lee K, Kolasinska-Zwierz P, Alekseyenko AA, Cheung MS, Day DS, Gadel S, Gorchakov AA, Gu T, Kharchenko PV, Kuan S, Latorre I, Linder-Basso D, et al. An assessment of histone-modification antibody quality. Nature Structural & Molecular Biology. 18: 91-3. PMID 21131980 DOI: 10.1038/Nsmb.1972 |
0.01 |
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| 2011 |
Nelson TA, Holmes S, Alekseyenko AV, Shenoy M, Desantis T, Wu CH, Andersen GL, Winston J, Sonnenburg J, Pasricha PJ, Spormann A. PhyloChip microarray analysis reveals altered gastrointestinal microbial communities in a rat model of colonic hypersensitivity. Neurogastroenterology and Motility : the Official Journal of the European Gastrointestinal Motility Society. 23: 169-77, e41-2. PMID 21129126 DOI: 10.1111/J.1365-2982.2010.01637.X |
0.01 |
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| 2011 |
Holmes S, Alekseyenko A, Timme A, Nelson T, Pasricha PJ, Spormann A. Visualization and statistical comparisons of microbial communities using R packages on Phylochip data. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 142-53. PMID 21121042 |
0.01 |
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| 2011 |
Gray RR, Tatem AJ, Johnson JA, Alekseyenko AV, Pybus OG, Suchard MA, Salemi M. Testing spatiotemporal hypothesis of bacterial evolution using methicillin-resistant Staphylococcus aureus ST239 genome-wide data within a bayesian framework. Molecular Biology and Evolution. 28: 1593-603. PMID 21112962 DOI: 10.1093/Molbev/Msq319 |
0.01 |
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| 2010 |
Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, Washietl S, Arshinoff BI, Ay F, Meyer PE, ... ... Alekseyenko AA, et al. Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science (New York, N.Y.). 330: 1787-97. PMID 21177974 DOI: 10.1126/Science.1198374 |
0.01 |
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| 2010 |
Gorchakov AA, Alekseyenko AA, Kharchenko PV, Park PJ, Kuroda MI. Dosage compensation in drosophila: Sequence-specific initiation and sequence-independent spreading of MSL complex to the active genes on the male X chromosome Russian Journal of Genetics. 46: 1263-1266. DOI: 10.1134/S1022795410100303 |
0.01 |
|
| 2010 |
Dezfulian C, Alekseyenko A, Hare JM, Perez-Pinzon MA. Nitrite Mediated Neuroprotection and Signaling after Cardiac Arrest Free Radical Biology and Medicine. 49: S154. DOI: 10.1016/J.FREERADBIOMED.2010.10.433 |
0.01 |
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| 2009 |
Gorchakov AA, Alekseyenko AA, Kharchenko P, Park PJ, Kuroda MI. Long-range spreading of dosage compensation in Drosophila captures transcribed autosomal genes inserted on X. Genes & Development. 23: 2266-71. PMID 19797766 DOI: 10.1101/Gad.1840409 |
0.01 |
|
| 2009 |
Sehl M, Alekseyenko AV, Lange KL. Accurate stochastic simulation via the step anticipation tau-leaping (SAL) algorithm. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 1195-208. PMID 19772431 DOI: 10.1089/Cmb.2008.0249 |
0.01 |
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| 2009 |
Dezfulian C, Shiva S, Alekseyenko A, Pendyal A, Beiser DG, Munasinghe JP, Anderson SA, Chesley CF, Vanden Hoek TL, Gladwin MT. Nitrite therapy after cardiac arrest reduces reactive oxygen species generation, improves cardiac and neurological function, and enhances survival via reversible inhibition of mitochondrial complex I. Circulation. 120: 897-905. PMID 19704094 DOI: 10.1161/Circulationaha.109.853267 |
0.01 |
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| 2008 |
Alekseyenko AV, Lee CJ, Suchard MA. Wagner and Dollo: a stochastic duet by composing two parsimonious solos. Systematic Biology. 57: 772-84. PMID 18853363 DOI: 10.1080/10635150802434394 |
0.01 |
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| 2008 |
Alekseyenko AA, Peng S, Larschan E, Gorchakov AA, Lee OK, Kharchenko P, McGrath SD, Wang CI, Mardis ER, Park PJ, Kuroda MI. A sequence motif within chromatin entry sites directs MSL establishment on the Drosophila X chromosome. Cell. 134: 599-609. PMID 18724933 DOI: 10.1016/J.Cell.2008.06.033 |
0.01 |
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| 2007 |
Larschan E, Alekseyenko AA, Gortchakov AA, Peng S, Li B, Yang P, Workman JL, Park PJ, Kuroda MI. MSL complex is attracted to genes marked by H3K36 trimethylation using a sequence-independent mechanism. Molecular Cell. 28: 121-33. PMID 17936709 DOI: 10.1016/J.Molcel.2007.08.011 |
0.01 |
|
| 2007 |
Peng S, Alekseyenko AA, Larschan E, Kuroda MI, Park PJ. Normalization and experimental design for ChIP-chip data. Bmc Bioinformatics. 8: 219. PMID 17592629 DOI: 10.1186/1471-2105-8-219 |
0.01 |
|
| 2007 |
Alekseyenko AV, Kim N, Lee CJ. Global analysis of exon creation versus loss and the role of alternative splicing in 17 vertebrate genomes. Rna (New York, N.Y.). 13: 661-70. PMID 17369312 DOI: 10.1261/Rna.325107 |
0.01 |
|
| 2007 |
Alekseyenko AV, Lee CJ. Nested Containment List (NCList): a new algorithm for accelerating interval query of genome alignment and interval databases. Bioinformatics (Oxford, England). 23: 1386-93. PMID 17234640 DOI: 10.1093/Bioinformatics/Btl647 |
0.01 |
|
| 2007 |
Kim N, Alekseyenko AV, Roy M, Lee C. The ASAP II database: analysis and comparative genomics of alternative splicing in 15 animal species. Nucleic Acids Research. 35: D93-8. PMID 17108355 DOI: 10.1093/Nar/Gkl884 |
0.01 |
|
| 2006 |
Larschan E, Alekseyenko AA, Lai WR, Park PJ, Kuroda MI. MSL complex associates with clusters of actively transcribed genes along the Drosophila male X chromosome. Cold Spring Harbor Symposia On Quantitative Biology. 71: 385-94. PMID 17381321 DOI: 10.1101/Sqb.2006.71.026 |
0.01 |
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| 2006 |
Belyaeva ES, Demakov SA, Pokholkova GV, Alekseyenko AA, Kolesnikova TD, Zhimulev IF. DNA underreplication in intercalary heterochromatin regions in polytene chromosomes of Drosophila melanogaster correlates with the formation of partial chromosomal aberrations and ectopic pairing. Chromosoma. 115: 355-66. PMID 16583218 DOI: 10.1007/s00412-006-0063-7 |
0.01 |
|
| 2006 |
Alekseyenko AA, Larschan E, Lai WR, Park PJ, Kuroda MI. High-resolution ChIP-chip analysis reveals that the Drosophila MSL complex selectively identifies active genes on the male X chromosome. Genes & Development. 20: 848-57. PMID 16547173 DOI: 10.1101/Gad.1400206 |
0.01 |
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| 2005 |
Belyakin SN, Christophides GK, Alekseyenko AA, Kriventseva EV, Belyaeva ES, Nanayev RA, Makunin IV, Kafatos FC, Zhimulev IF. Genomic analysis of Drosophila chromosome underreplication reveals a link between replication control and transcriptional territories. Proceedings of the National Academy of Sciences of the United States of America. 102: 8269-74. PMID 15928082 DOI: 10.1073/pnas.0502702102 |
0.01 |
|
| 2004 |
Bai X, Alekseyenko AA, Kuroda MI. Sequence-specific targeting of MSL complex regulates transcription of the roX RNA genes. The Embo Journal. 23: 2853-61. PMID 15229655 DOI: 10.1038/sj.emboj.7600299 |
0.01 |
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| 2004 |
Resch A, Xing Y, Alekseyenko A, Modrek B, Lee C. Evidence for a subpopulation of conserved alternative splicing events under selection pressure for protein reading frame preservation. Nucleic Acids Research. 32: 1261-9. PMID 14982953 DOI: 10.1093/Nar/Gkh284 |
0.01 |
|
| 2004 |
Alekseyenko AA, Kuroda MI. Molecular biology. Filling gaps in genome organization. Science (New York, N.Y.). 303: 1148-9. PMID 14976302 DOI: 10.1126/science.1095356 |
0.01 |
|
| 2003 |
Belyaeva ES, Boldyreva LV, Volkova EI, Nanayev RA, Alekseyenko AA, Zhimulev IF. Effect of the Suppressor of Underreplication (SuUR) gene on position-effect variegation silencing in Drosophila melanogaster. Genetics. 165: 1209-20. PMID 14668376 |
0.01 |
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| 2003 |
Demakova OV, Kotlikova IV, Gordadze PR, Alekseyenko AA, Kuroda MI, Zhimulev IF. The MSL complex levels are critical for its correct targeting to the chromosomes in Drosophila melanogaster. Chromosoma. 112: 103-15. PMID 14579126 DOI: 10.1007/s00412-003-0249-1 |
0.01 |
|
| 2003 |
Zhimulev IF, Belyaeva ES, Makunin IV, Pirrotta V, Semeshin VF, Alekseyenko AA, Belyakin SN, Volkova EI, Koryakov DE, Andreyeva EN, Demakova OV, Kotlikova IV, Kolesnikova TD, Boldyreva LV, Nanayev RA. Intercalary heterochromatin in Drosophila melanogaster polytene chromosomes and the problem of genetic silencing. Genetica. 117: 259-70. PMID 12723705 DOI: 10.1023/A:1022912716376 |
0.01 |
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| 2003 |
Zhimulev IF, Belyaeva ES, Makunin IV, Pirrotta V, Volkova EI, Alekseyenko AA, Andreyeva EN, Makarevich GF, Boldyreva LV, Nanayev RA, Demakova OV. Influence of the SuUR gene on intercalary heterochromatin in Drosophila melanogaster polytene chromosomes. Chromosoma. 111: 377-98. PMID 12644953 DOI: 10.1007/s00412-002-0218-0 |
0.01 |
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| 2002 |
Moshkin YM, Belyakin SN, Rubtsov NB, Kokoza EB, Alekseyenko AA, Volkova EI, Belyaeva ES, Makunin IV, Spierer P, Zhimulev IF. Microdissection and sequence analysis of pericentric heterochromatin from the Drosophila melanogastermutant Suppressor of Underreplication. Chromosoma. 111: 114-25. PMID 12111334 DOI: 10.1007/s00412-002-0190-8 |
0.01 |
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| 2002 |
Alekseyenko AA, Demakova OV, Belyaeva ES, Makarevich GF, Kotlikova IV, Nöthiger R, Zhimulev IF. Dosage compensation and intercalary heterochromatin in X chromosomes of Drosophila melanogaster. Chromosoma. 111: 106-13. PMID 12111333 DOI: 10.1007/s00412-002-0191-7 |
0.01 |
|
| 2001 |
Moshkin YM, Alekseyenko AA, Semeshin VF, Spierer A, Spierer P, Makarevich GF, Belyaeva ES, Zhimulev IF. The bithorax complex of Drosophila melanogaster: Underreplication and morphology in polytene chromosomes. Proceedings of the National Academy of Sciences of the United States of America. 98: 570-4. PMID 11136231 DOI: 10.1073/pnas.021353598 |
0.01 |
|
| 1999 |
Koryakov DE, Alekseyenko AA, Zhimulev IF. Dynamic organization of the beta-heterochromatin in the Drosophila melanogaster polytene X chromosome. Molecular & General Genetics : Mgg. 260: 503-9. PMID 9928929 DOI: 10.1007/s004380050923 |
0.01 |
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| 1999 |
Sinitsyn NI, Gulyaev YV, Devjatkov ND, Golant MB, Alekseyenko AM, Zakharchenko YF, Torgashov GV. Potentials of vacuum microelectronics on the way to constructing microwave vacuum integrated circuits Radiotekhnika. 8-17. |
0.01 |
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| 1998 |
Belyaeva ES, Zhimulev IF, Volkova EI, Alekseyenko AA, Moshkin YM, Koryakov DE. Su(UR)ES: a gene suppressing DNA underreplication in intercalary and pericentric heterochromatin of Drosophila melanogaster polytene chromosomes. Proceedings of the National Academy of Sciences of the United States of America. 95: 7532-7. PMID 9636184 DOI: 10.1073/pnas.95.13.7532 |
0.01 |
|
| 1996 |
Koryakov DE, Belyaeva ES, Alekseyenko AA, Zhimulev IF. Alpha and beta heterochromatin in polytene chromosome 2 of Drosophila melanogaster. Chromosoma. 105: 310-9. PMID 8939824 DOI: 10.1007/BF02524649 |
0.01 |
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| 1995 |
Pan'kov IV, Volkova YN, Alekseyenko AV, Kuz'menko MI. Radioecological conditions of the Volga River ecosystem Hydrobiological Journal. 31: 54-69. |
0.01 |
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| 1993 |
Alekseyenko AL, Ignatov AN, Melent'yev OG. Investigation of the frequency properties of distributed electrical networks Telecommunications and Radio Engineering (English Translation of Elektrosvyaz and Radiotekhnika). 48: 142-143. |
0.01 |
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| 1979 |
Alekseyenko AV. Long-term results of surgical and conservative treatment of patients with extensive forms of chronic inflammatory-suppurative lung diseases Klinicheskaya Khirurgiya. 15-17. PMID 502183 |
0.01 |
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| 1978 |
Sokolov SB, Alekseyenko AV, Lavrentyev Yu. A. Some problems of prophylaxis of complications following operations on the lungs in patients with spread forms of chronic suppurative pulmonary disease Klinicheskaya Khirurgiya. 6-9. PMID 703090 |
0.01 |
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| 1977 |
Saprykin VD, Alekseyenko AI, Kogan LM. NEGATIVE RESISTANCE AND RED ELECTROLUMINESCENCE OF GALLIUM PHOSPHIDE S-DIODES AT T greater than 300 degree K Radio Eng Electron Phys. 22: 158-160. |
0.01 |
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| 1977 |
Sokolov SB, Alekseyenko AV, Mandel PI. Efficiency of surgical treatment of patients with inflammatory-suppurative pulmonary disease of various origin Klinicheskaya Khirurgiya. 21-24. |
0.01 |
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