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Karla B. Heidelberg - Publications

Affiliations: 
University of Southern California, Los Angeles, CA, United States 
Area:
zooplankton, environmental microbial ecology
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38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Pasulka A, Hu SK, Countway PD, Coyne KJ, Cary SC, Heidelberg KB, Caron DA. SSU-rRNA Gene Sequencing Survey of Benthic Microbial Eukaryotes from Guaymas Basin Hydrothermal Vent. The Journal of Eukaryotic Microbiology. PMID 30620427 DOI: 10.1111/Jeu.12711  0.55
2018 Marshall A, Phillips L, Longmore A, Tang C, Heidelberg K, Mele P. Primer selection influences abundance estimates of ammonia oxidizing archaea in coastal marine sediments. Marine Environmental Research. PMID 29891388 DOI: 10.1016/J.Marenvres.2018.06.001  0.384
2018 Hu SK, Liu Z, Alexander H, Campbell V, Connell PE, Dyhrman ST, Heidelberg KB, Caron DA. Shifting metabolic priorities among key protistan taxa within and below the euphotic zone. Environmental Microbiology. PMID 29708635 DOI: 10.1111/1462-2920.14259  0.418
2018 Lie AAY, Liu Z, Terrado R, Tatters AO, Heidelberg KB, Caron DA. A tale of two mixotrophic chrysophytes: Insights into the metabolisms of two Ochromonas species (Chrysophyceae) through a comparison of gene expression. Plos One. 13: e0192439. PMID 29438384 DOI: 10.1371/Journal.Pone.0192439  0.321
2018 Carpenter KJ, Bose M, Polerecky L, Lie AAY, Heidelberg KB, Caron DA. Single-Cell View of Carbon and Nitrogen Acquisition in the Mixotrophic Alga Prymnesium parvum (Haptophyta) Inferred From Stable Isotope Tracers and NanoSIMS Frontiers in Marine Science. 5. DOI: 10.3389/Fmars.2018.00157  0.368
2017 Terrado R, Pasulka AL, Lie AA, Orphan VJ, Heidelberg KB, Caron DA. Autotrophic and heterotrophic acquisition of carbon and nitrogen by a mixotrophic chrysophyte established through stable isotope analysis. The Isme Journal. PMID 28524870 DOI: 10.1038/Ismej.2017.68  0.35
2017 Liu Z, Hu SK, Campbell V, Tatters AO, Heidelberg KB, Caron DA. Single-cell transcriptomics of small microbial eukaryotes: limitations and potential. The Isme Journal. PMID 28060364 DOI: 10.1038/Ismej.2016.190  0.363
2016 Caron DA, Alexander H, Allen AE, Archibald JM, Armbrust EV, Bachy C, Bell CJ, Bharti A, Dyhrman ST, Guida SM, Heidelberg KB, Kaye JZ, Metzner J, Smith SR, Worden AZ. Probing the evolution, ecology and physiology of marine protists using transcriptomics. Nature Reviews. Microbiology. PMID 27867198 DOI: 10.1038/Nrmicro.2016.160  0.511
2016 Holm JB, Heidelberg KB. Microbiomes of Muricea californica and M. fruticosa: Comparative Analyses of Two Co-occurring Eastern Pacific Octocorals. Frontiers in Microbiology. 7: 917. PMID 27445997 DOI: 10.3389/Fmicb.2016.00917  0.715
2016 Liu Z, Campbell V, Heidelberg KB, Caron DA. Gene expression characterizes different nutritional strategies among three mixotrophic protists. Fems Microbiology Ecology. PMID 27194617 DOI: 10.1093/Femsec/Fiw106  0.399
2015 Liu Z, Koid AE, Terrado R, Campbell V, Caron DA, Heidelberg KB. Changes in gene expression of Prymnesium parvum induced by nitrogen and phosphorus limitation. Frontiers in Microbiology. 6: 631. PMID 26157435 DOI: 10.3389/Fmicb.2015.00631  0.687
2015 Liu Z, Jones AC, Campbell V, Hambright KD, Heidelberg KB, Caron DA. Gene expression in the mixotrophic prymnesiophyte, Prymnesium parvum, responds to prey availability. Frontiers in Microbiology. 6: 319. PMID 25941521 DOI: 10.3389/Fmicb.2015.00319  0.408
2015 Andrade K, Logemann J, Heidelberg KB, Emerson JB, Comolli LR, Hug LA, Probst AJ, Keillar A, Thomas BC, Miller CS, Allen EE, Moreau JW, Brocks JJ, Banfield JF. Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem. The Isme Journal. PMID 25918833 DOI: 10.1038/Ismej.2015.66  0.529
2015 Tully BJ, Emerson JB, Andrade K, Brocks JJ, Allen EE, Banfield JF, Heidelberg KB. De novo sequences of Haloquadratum walsbyi from Lake Tyrrell, Australia, reveal a variable genomic landscape. Archaea (Vancouver, B.C.). 2015: 875784. PMID 25709557 DOI: 10.1155/2015/875784  0.416
2014 Tully BJ, Sachdeva R, Heidelberg KB, Heidelberg JF. Comparative genomics of planktonic Flavobacteriaceae from the Gulf of Maine using metagenomic data. Microbiome. 2: 34. PMID 25258679 DOI: 10.1186/2049-2618-2-34  0.419
2014 Koid AE, Liu Z, Terrado R, Jones AC, Caron DA, Heidelberg KB. Comparative transcriptome analysis of four prymnesiophyte algae. Plos One. 9: e97801. PMID 24926657 DOI: 10.1371/Journal.Pone.0097801  0.71
2014 Podell S, Emerson JB, Jones CM, Ugalde JA, Welch S, Heidelberg KB, Banfield JF, Allen EE. Seasonal fluctuations in ionic concentrations drive microbial succession in a hypersaline lake community. The Isme Journal. 8: 979-90. PMID 24335829 DOI: 10.1038/Ismej.2013.221  0.544
2013 Emerson JB, Thomas BC, Andrade K, Heidelberg KB, Banfield JF. New approaches indicate constant viral diversity despite shifts in assemblage structure in an Australian hypersaline lake. Applied and Environmental Microbiology. 79: 6755-64. PMID 23995931 DOI: 10.1128/Aem.01946-13  0.447
2013 Emerson JB, Andrade K, Thomas BC, Norman A, Allen EE, Heidelberg KB, Banfield JF. Virus-host and CRISPR dynamics in Archaea-dominated hypersaline Lake Tyrrell, Victoria, Australia. Archaea (Vancouver, B.C.). 2013: 370871. PMID 23853523 DOI: 10.1155/2013/370871  0.399
2013 Heidelberg KB, Nelson WC, Holm JB, Eisenkolb N, Andrade K, Emerson JB. Characterization of eukaryotic microbial diversity in hypersaline Lake Tyrrell, Australia. Frontiers in Microbiology. 4: 115. PMID 23717306 DOI: 10.3389/Fmicb.2013.00115  0.637
2013 López-Lozano NE, Heidelberg KB, Nelson WC, García-Oliva F, Eguiarte LE, Souza V. Microbial secondary succession in soil microcosms of a desert oasis in the Cuatro Cienegas Basin, Mexico. Peerj. 1: e47. PMID 23638384 DOI: 10.7717/Peerj.47  0.41
2013 Podell S, Ugalde JA, Narasingarao P, Banfield JF, Heidelberg KB, Allen EE. Assembly-driven community genomics of a hypersaline microbial ecosystem. Plos One. 8: e61692. PMID 23637883 DOI: 10.1371/Journal.Pone.0061692  0.53
2013 Heidelberg KB, Nelson WC, Holm JB, Eisenkolb N, Andrade K, Emerson JB. Characterization of eukaryotic microbial diversity in hypersaline lake tyrrell, australia Frontiers in Microbiology. 4. DOI: 10.3389/fmicb.2013.00115  0.768
2012 Emerson JB, Thomas BC, Andrade K, Allen EE, Heidelberg KB, Banfield JF. Dynamic viral populations in hypersaline systems as revealed by metagenomic assembly. Applied and Environmental Microbiology. 78: 6309-20. PMID 22773627 DOI: 10.1128/Aem.01212-12  0.427
2012 Koid A, Nelson WC, Mraz A, Heidelberg KB. Comparative analysis of eukaryotic marine microbial assemblages from 18S rRNA gene and gene transcript clone libraries by using different methods of extraction. Applied and Environmental Microbiology. 78: 3958-65. PMID 22447590 DOI: 10.1128/Aem.06941-11  0.724
2012 Narasingarao P, Podell S, Ugalde JA, Brochier-Armanet C, Emerson JB, Brocks JJ, Heidelberg KB, Banfield JF, Allen EE. De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities. The Isme Journal. 6: 81-93. PMID 21716304 DOI: 10.1038/Ismej.2011.78  0.521
2010 Heidelberg KB, Gilbert JA, Joint I. Marine genomics: At the interface of marine microbial ecology and biodiscovery: Minireview Microbial Biotechnology. 3: 531-543. PMID 20953417 DOI: 10.1111/J.1751-7915.2010.00193.X  0.395
2010 Thomas T, Rusch D, DeMaere MZ, Yung PY, Lewis M, Halpern A, Heidelberg KB, Egan S, Steinberg PD, Kjelleberg S. Functional genomic signatures of sponge bacteria reveal unique and shared features of symbiosis. The Isme Journal. 4: 1557-67. PMID 20520651 DOI: 10.1038/Ismej.2010.74  0.469
2010 Heidelberg KB, O'Neil KL, Bythell JC, Sebens KP. Vertical distribution and diel patterns of zooplankton abundance and biomass at Conch Reef, Florida Keys (USA). Journal of Plankton Research. 32: 75-91. PMID 20046854 DOI: 10.1093/Plankt/Fbp101  0.671
2009 Caron DA, Worden AZ, Countway PD, Demir E, Heidelberg KB. Protists are microbes too: a perspective. The Isme Journal. 3: 4-12. PMID 19005497 DOI: 10.1038/Ismej.2008.101  0.443
2008 Williamson SJ, Rusch DB, Yooseph S, Halpern AL, Heidelberg KB, Glass JI, Andrews-Pfannkoch C, Fadrosh D, Miller CS, Sutton G, Frazier M, Venter JC. The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samples. Plos One. 3: e1456. PMID 18213365 DOI: 10.1371/Journal.Pone.0001456  0.496
2007 Rusch DB, Halpern AL, Sutton G, Heidelberg KB, Williamson S, Yooseph S, Wu D, Eisen JA, Hoffman JM, Remington K, Beeson K, Tran B, Smith H, Baden-Tillson H, Stewart C, et al. The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific. Plos Biology. 5: e77. PMID 17355176 DOI: 10.1371/Journal.Pbio.0050077  0.536
2007 Yooseph S, Sutton G, Rusch DB, Halpern AL, Williamson SJ, Remington K, Eisen JA, Heidelberg KB, Manning G, Li W, Jaroszewski L, Cieplak P, Miller CS, Li H, Mashiyama ST, et al. The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families. Plos Biology. 5: e16. PMID 17355171 DOI: 10.1371/Journal.Pbio.0050016  0.355
2005 Remington KA, Heidelberg K, Venter JC. Taking metagenomic studies in context. Trends in Microbiology. 13: 404. PMID 16039858 DOI: 10.1016/J.Tim.2005.07.001  0.431
2005 Heidelberg KB, Heidelberg JF. Marine environmental genomics: New secrets from a mysterious ocean Marine Technology Society Journal. 39: 94-98. DOI: 10.4031/002533205787442549  0.496
2004 Heidelberg K, Sebens K, Purcell J. Composition and sources of near reef zooplankton on a Jamaican forereef along with implications for coral feeding Coral Reefs. 23. DOI: 10.1007/S00338-004-0375-0  0.373
2002 Heidelberg JF, Heidelberg KB, Colwell RR. Bacteria of the γ-subclass Proteobacteria associated with zooplankton in Chesapeake Bay Applied and Environmental Microbiology. 68: 5498-5507. PMID 12406743 DOI: 10.1128/Aem.68.11.5498-5507.2002  0.385
2002 Heidelberg JF, Heidelberg KB, Colwell RR. Seasonality of chesapeake bay bacterioplankton species Applied and Environmental Microbiology. 68: 5488-5497. PMID 12406742 DOI: 10.1128/Aem.68.11.5488-5497.2002  0.343
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