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Salvador Dura-Bernal, PhD - Publications

Affiliations: 
Physiology & Pharmacology SUNY Downstate, Brooklyn, NY, United States 
Area:
Computational Neuroscience
Website:
https://downstate.academia.edu/SalvadorDuraBernal
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48 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Dura-Bernal S, Herrera B, Lupascu C, Marsh BM, Gandolfi D, Marasco A, Neymotin S, Romani A, Solinas S, Bazhenov M, Hay E, Migliore M, Reinmann M, Arkhipov A. Large-Scale Mechanistic Models of Brain Circuits with Biophysically and Morphologically Detailed Neurons. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 44. PMID 39358017 DOI: 10.1523/JNEUROSCI.1236-24.2024  0.677
2024 Griffith EY, ElSayed M, Dura-Bernal S, Neymotin SA, Uhlrich DJ, Lytton WW, Zhu JJ. Mechanism of an Intrinsic Oscillation in Rat Geniculate Interneurons. Biorxiv : the Preprint Server For Biology. PMID 38895250 DOI: 10.1101/2024.06.06.597830  0.713
2023 Dura-Bernal S, Griffith EY, Barczak A, O'Connell MN, McGinnis T, Moreira JVS, Schroeder CE, Lytton WW, Lakatos P, Neymotin SA. Data-driven multiscale model of macaque auditory thalamocortical circuits reproduces in vivo dynamics. Cell Reports. 42: 113378. PMID 37925640 DOI: 10.1016/j.celrep.2023.113378  0.758
2023 Dura-Bernal S, Neymotin SA, Suter BA, Dacre J, Moreira JVS, Urdapilleta E, Schiemann J, Duguid I, Shepherd GMG, Lytton WW. Multiscale model of primary motor cortex circuits predicts in vivo cell-type-specific, behavioral state-dependent dynamics. Cell Reports. 42: 112574. PMID 37300831 DOI: 10.1016/j.celrep.2023.112574  0.793
2022 Borges FS, Moreira JVS, Takarabe LM, Lytton WW, Dura-Bernal S. Large-scale biophysically detailed model of somatosensory thalamocortical circuits in NetPyNE. Frontiers in Neuroinformatics. 16: 884245. PMID 36213546 DOI: 10.3389/fninf.2022.884245  0.658
2022 Neymotin SA, Tal I, Barczak A, O'Connell MN, McGinnis T, Markowitz N, Espinal E, Griffith E, Anwar H, Dura-Bernal S, Schroeder CE, Lytton WW, Jones SR, Bickel S, Lakatos P. Detecting spontaneous neural oscillation events in primate auditory cortex. Eneuro. PMID 35906065 DOI: 10.1523/ENEURO.0281-21.2022  0.753
2022 Awile O, Kumbhar P, Cornu N, Dura-Bernal S, King JG, Lupton O, Magkanaris I, McDougal RA, Newton AJH, Pereira F, Săvulescu A, Carnevale NT, Lytton WW, Hines ML, Schürmann F. Modernizing the NEURON Simulator for Sustainability, Portability, and Performance. Frontiers in Neuroinformatics. 16: 884046. PMID 35832575 DOI: 10.3389/fninf.2022.884046  0.587
2022 Anwar H, Caby S, Dura-Bernal S, D'Onofrio D, Hasegan D, Deible M, Grunblatt S, Chadderdon GL, Kerr CC, Lakatos P, Lytton WW, Hazan H, Neymotin SA. Training a spiking neuronal network model of visual-motor cortex to play a virtual racket-ball game using reinforcement learning. Plos One. 17: e0265808. PMID 35544518 DOI: 10.1371/journal.pone.0265808  0.742
2022 Medlock L, Sekiguchi K, Hong S, Dura-Bernal S, Lytton WW, Prescott SA. Multiscale Computer Model of the Spinal Dorsal Horn Reveals Changes in Network Processing Associated with Chronic Pain. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 42: 3133-3149. PMID 35232767 DOI: 10.1523/JNEUROSCI.1199-21.2022  0.59
2021 Romaro C, Najman FA, Lytton WW, Roque AC, Dura-Bernal S. NetPyNE Implementation and Scaling of the Potjans-Diesmann Cortical Microcircuit Model. Neural Computation. 33: 1993-2032. PMID 34411272 DOI: 10.1162/neco_a_01400  0.618
2021 Peng GCY, Alber M, Tepole AB, Cannon WR, De S, Dura-Bernal S, Garikipati K, Karniadakis G, Lytton WW, Perdikaris P, Petzold L, Kuhl E. Multiscale modeling meets machine learning: What can we learn? Archives of Computational Methods in Engineering : State of the Art Reviews. 28: 1017-1037. PMID 34093005 DOI: 10.1007/s11831-020-09405-5  0.539
2021 Kelley C, Dura-Bernal S, Neymotin SA, Antic SD, Carnevale NT, Migliore M, Lytton WW. Effects of I and TASK-like shunting current on dendritic impedance in layer 5 pyramidal-tract neurons. Journal of Neurophysiology. PMID 33689489 DOI: 10.1152/jn.00015.2021  0.772
2020 Sivagnanam S, Gorman W, Doherty D, Neymotin SA, Fang S, Hovhannisyan H, Lytton WW, Dura-Bernal S. Simulating Large-scale Models of Brain Neuronal Circuits using Google Cloud Platform. Pearc20 : Practice and Experience in Advanced Research Computing 2020 : Catch the Wave : July 27-31, 2020, Portland, or Virtual Conference. Practice and Experience in Advanced Research Computing (Conference) (2020 : Online). 2020: 505-509. PMID 35098264 DOI: 10.1145/3311790.3399621  0.754
2020 Gao PP, Graham JW, Zhou WL, Jang J, Angulo SL, Dura-Bernal S, Hines ML, Lytton W, Antic SD. Local Glutamate-Mediated Dendritic Plateau Potentials Change the State of the Cortical Pyramidal Neuron. Journal of Neurophysiology. PMID 33085562 DOI: 10.1152/jn.00734.2019  0.59
2020 Dai K, Hernando J, Billeh YN, Gratiy SL, Planas J, Davison AP, Dura-Bernal S, Gleeson P, Devresse A, Dichter BK, Gevaert M, King JG, Van Geit WAH, Povolotsky AV, Muller E, et al. The SONATA data format for efficient description of large-scale network models. Plos Computational Biology. 16: e1007696. PMID 32092054 DOI: 10.1371/Journal.Pcbi.1007696  0.416
2020 Peng GCY, Alber M, Tepole AB, Cannon WR, De S, Dura-Bernal S, Garikipati K, Karniadakis G, Lytton WW, Perdikaris P, Petzold L, Kuhl E. Multiscale Modeling Meets Machine Learning: What Can We Learn? Archives of Computational Methods in Engineering. 1-21. DOI: 10.1007/S11831-020-09405-5  0.332
2019 Alber M, Buganza Tepole A, Cannon WR, De S, Dura-Bernal S, Garikipati K, Karniadakis G, Lytton WW, Perdikaris P, Petzold L, Kuhl E. Integrating machine learning and multiscale modeling-perspectives, challenges, and opportunities in the biological, biomedical, and behavioral sciences. Npj Digital Medicine. 2: 115. PMID 31799423 DOI: 10.1038/S41746-019-0193-Y  0.594
2019 Gleeson P, Cantarelli M, Marin B, Quintana A, Earnshaw M, Sadeh S, Piasini E, Birgiolas J, Cannon RC, Cayco-Gajic NA, Crook S, Davison AP, Dura-Bernal S, Ecker A, Hines ML, et al. Open Source Brain: A Collaborative Resource for Visualizing, Analyzing, Simulating, and Developing Standardized Models of Neurons and Circuits. Neuron. PMID 31201122 DOI: 10.1016/J.Neuron.2019.05.019  0.654
2019 Dura-Bernal S, Suter BA, Gleeson P, Cantarelli M, Quintana A, Rodriguez F, Kedziora DJ, Chadderdon GL, Kerr CC, Neymotin SA, McDougal RA, Hines M, Shepherd GMG, Lytton WW. NetPyNE, a tool for data-driven multiscale modeling of brain circuits. Elife. 8. PMID 31025934 DOI: 10.7554/Elife.44494  0.796
2019 Dura-Bernal S, Suter BA, Gleeson P, Cantarelli M, Quintana A, Rodriguez F, Kedziora DJ, Chadderdon GL, Kerr CC, Neymotin SA, McDougal RA, Hines M, Shepherd GM, Lytton WW. Author response: NetPyNE, a tool for data-driven multiscale modeling of brain circuits Elife. DOI: 10.7554/Elife.44494.016  0.773
2018 Cantarelli M, Marin B, Quintana A, Earnshaw M, Court R, Gleeson P, Dura-Bernal S, Silver RA, Idili G. Geppetto: a reusable modular open platform for exploring neuroscience data and models. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 373. PMID 30201843 DOI: 10.1098/Rstb.2017.0380  0.457
2017 Dura-Bernal S, Neymotin SA, Kerr CC, Sivagnanam S, Majumdar A, Francis JT, Lytton WW. Evolutionary algorithm optimization of biological learning parameters in a biomimetic neuroprosthesis. Ibm Journal of Research and Development. 61: 6.1-6.14. PMID 29200477 DOI: 10.1147/Jrd.2017.2656758  0.761
2017 Neymotin SA, Suter BA, Dura-Bernal S, Shepherd GM, Migliore M, Lytton WW. Optimizing computer models of corticospinal neurons to replicate in vitro dynamics. Journal of Neurophysiology. 117: 148-162. PMID 27760819 DOI: 10.1152/Jn.00570.2016  0.797
2017 Newton AJH, Seidenstein AH, McDougal RA, Pérez-Cervera A, Huguet G, M-Seara T, Haimerl C, Angulo-Garcia D, Torcini A, Cossart R, Malvache A, Skiker K, Maouene M, Ragognetti G, Lorusso L, ... ... Dura-Bernal S, et al. 26th Annual Computational Neuroscience Meeting (CNS*2017): Part 3 Bmc Neuroscience. 18. DOI: 10.1186/S12868-017-0372-1  0.74
2017 Rubchinsky LL, Ahn S, Klijn W, Cumming B, Yates S, Karakasis V, Peyser A, Woodman M, Diaz-Pier S, Deraeve J, Vassena E, Alexander W, Beeman D, Kudela P, Boatman-Reich D, ... ... Dura-Bernal S, et al. 26th Annual Computational Neuroscience Meeting (CNS*2017): Part 2 Bmc Neuroscience. 18. DOI: 10.1186/S12868-017-0371-2  0.699
2017 Denham S, Poirazi P, De Schutter E, Friston K, Chan HK, Nowotny T, Han D, Hong S, Rosay S, Wernle T, Treves A, Goethals S, Brette R, Van Pottelbergh T, Sepulchre R, ... ... Dura-Bernal S, et al. 26th Annual Computational Neuroscience Meeting (CNS*2017): Part 1 Bmc Neuroscience. 18. DOI: 10.1186/S12868-017-0370-3  0.553
2016 Neymotin SA, Dura-Bernal S, Moreno H, Lytton WW. Computer modeling for pharmacological treatments for dystonia. Drug Discovery Today. Disease Models. 19: 51-57. PMID 28983321 DOI: 10.1016/J.Ddmod.2017.02.003  0.725
2016 Lytton WW, Seidenstein AH, Dura-Bernal S, McDougal RA, Schürmann F, Hines ML. Simulation Neurotechnologies for Advancing Brain Research: Parallelizing Large Networks in NEURON. Neural Computation. 1-28. PMID 27557104 DOI: 10.1162/Neco_A_00876  0.624
2016 Sharpee TO, Destexhe A, Kawato M, Sekulić V, Skinner FK, Wójcik DK, Chintaluri C, Cserpán D, Somogyvári Z, Kim JK, Kilpatrick ZP, Bennett MR, Josić K, Elices I, Arroyo D, ... ... Dura-Bernal S, et al. 25th Annual Computational Neuroscience Meeting: CNS-2016 Bmc Neuroscience. 17: 54. PMID 27534393 DOI: 10.1186/S12868-016-0283-6  0.735
2016 Neymotin SA, Dura-Bernal S, Lakatos P, Sanger TD, Lytton WW. Multitarget Multiscale Simulation for Pharmacological Treatment of Dystonia in Motor Cortex. Frontiers in Pharmacology. 7: 157. PMID 27378922 DOI: 10.3389/Fphar.2016.00157  0.76
2016 Dura-Bernal S, Li K, Neymotin SA, Francis JT, Principe JC, Lytton WW. Restoring Behavior via Inverse Neurocontroller in a Lesioned Cortical Spiking Model Driving a Virtual Arm. Frontiers in Neuroscience. 10: 28. PMID 26903796 DOI: 10.3389/Fnins.2016.00028  0.755
2015 Dura-Bernal S, Zhou X, Neymotin SA, Przekwas A, Francis JT, Lytton WW. Cortical Spiking Network Interfaced with Virtual Musculoskeletal Arm and Robotic Arm. Frontiers in Neurorobotics. 9: 13. PMID 26635598 DOI: 10.3389/Fnbot.2015.00013  0.765
2015 Dura-Bernal S, Kerr CC, Neymotin SA, Suter BA, Shepherd GM, Francis JT, Lytton WW. Large-scale M1 microcircuit model with plastic input connections from biological PMd neurons used for prosthetic arm control Bmc Neuroscience. 16. DOI: 10.1186/1471-2202-16-S1-P153  0.783
2015 Neymotin SA, Suter BA, Migliore M, Dura-Bernal S, Shepherd GM, Lytton WW. Motor cortex neurons: from experiment to model via evolutionary algorithms Bmc Neuroscience. 16. DOI: 10.1186/1471-2202-16-S1-P152  0.79
2015 Choi JS, Menzies RJ, Dura-Bernal S, Francis JT, Lytton WW, Kerr CC. Spiking network modeling of neuronal dynamics in individual rats Bmc Neuroscience. 16: P122. DOI: 10.1186/1471-2202-16-S1-P122  0.639
2015 Li K, Dura-Bernal S, Francis JT, Lytton WW, Principe JC. Repairing lesions via kernel adaptive inverse control in a biomimetic model of sensorimotor cortex International Ieee/Embs Conference On Neural Engineering, Ner. 2015: 478-481. DOI: 10.1109/NER.2015.7146663  0.523
2014 Dura-Bernal S, Chadderdon GL, Neymotin SA, Francis JT, Lytton WW. Towards a real-time interface between a biomimetic model of sensorimotor cortex and a robotic arm. Pattern Recognition Letters. 36: 204-212. PMID 26709323 DOI: 10.1016/J.Patrec.2013.05.019  0.745
2014 Lee G, Matsunaga A, Dura-Bernal S, Zhang W, Lytton WW, Francis JT, Fortes JA. Towards real-time communication between in vivo neurophysiological data sources and simulator-based brain biomimetic models. Journal of Computational Surgery. 3: 1-23. PMID 26702394 DOI: 10.1186/S40244-014-0012-3  0.623
2014 Kerr CC, O'Shea DJ, Goo W, Dura-Bernal S, Francis JT, Diester I, Kalanithi P, Deisseroth K, Shenoy KV, Lytton WW. Network-level effects of optogenetic stimulation in a computer model of macaque primary motor cortex Bmc Neuroscience. 15. DOI: 10.1186/1471-2202-15-S1-P107  0.64
2014 Dura-Bernal S, Li K, Brockmeier AJ, Kerr CC, Neymotin SA, Principe JC, Francis JT, Lytton WW. Modulation of virtual arm trajectories via microstimulation in a spiking model of sensorimotor cortex Bmc Neuroscience. 15. DOI: 10.1186/1471-2202-15-S1-P106  0.766
2014 Dura-Bernal S, Chadderdon GL, Neymotin SA, Francis JT, Lytton WW. Towards a real-time interface between a biomimetic model of sensorimotor cortex and a robotic arm Pattern Recognition Letters. 36: 204-212. DOI: 10.1016/j.patrec.2013.05.019  0.708
2013 Dura-Bernal S, Garreau G, Georgiou J, Andreou AG, Denham SL, Wennekers T. Multimodal integration of micro-Doppler sonar and auditory signals for behavior classification with convolutional networks. International Journal of Neural Systems. 23: 1350021. PMID 23924412 DOI: 10.1142/S0129065713500214  0.608
2013 Dura-Bernal S, Chadderdon GL, Neymotin SA, Zhou X, Przekwas A, Francis JT, Lytton WW. Virtual musculoskeletal arm and robotic arm driven by a biomimetic model of sensorimotor cortex with reinforcement learning 2013 Ieee Signal Processing in Medicine and Biology Symposium, Spmb 2013. DOI: 10.1109/SPMB.2013.6736768  0.708
2012 Dura-Bernal S, Wennekers T, Denham SL. Top-down feedback in an HMAX-like cortical model of object perception based on hierarchical Bayesian networks and belief propagation. Plos One. 7: e48216. PMID 23139765 DOI: 10.1371/Journal.Pone.0048216  0.663
2011 Dura-Bernal S, Wennekers T, Denham SL. The role of feedback in a hierarchical model of object perception. Advances in Experimental Medicine and Biology. 718: 165-79. PMID 21744218 DOI: 10.1007/978-1-4614-0164-3_14  0.637
2011 Dura-Bernal S, Wennekers T, Denham SL. Modelling object perception in cortex: Hierarchical Bayesian networks and belief propagation 2011 45th Annual Conference On Information Sciences and Systems, Ciss 2011. DOI: 10.1109/CISS.2011.5766096  0.59
2011 Garreau G, Andreou CM, Andreou AG, Georgiou J, Dura-Bernal S, Wennekers T, Denham S. Gait-based person and gender recognition using micro-doppler signatures 2011 Ieee Biomedical Circuits and Systems Conference, Biocas 2011. 444-447. DOI: 10.1109/BioCAS.2011.6107823  0.508
2011 Dura-Bernal S, Garreau G, Andreou C, Andreou A, Georgiou J, Wennekers T, Denham S. Human action categorization using ultrasound micro-Doppler signatures Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7065: 18-28. DOI: 10.1007/978-3-642-25446-8_3  0.518
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