| Year |
Citation |
Score |
| 2024 |
Voronov D, Paganos P, Magri MS, Cuomo C, Maeso I, Gómez-Skarmeta JL, Arnone MI. Integrative multi-omics increase resolution of the sea urchin posterior gut gene regulatory network at single cell level. Development (Cambridge, England). PMID 39058236 DOI: 10.1242/dev.202278 |
0.367 |
|
| 2024 |
Buono L, Annona G, Magri MS, Negueruela S, Sepe RM, Caccavale F, Maeso I, Arnone MI, D'Aniello S. Conservation of -Regulatory Syntax Underlying Deuterostome Gastrulation. Cells. 13. PMID 38994973 DOI: 10.3390/cells13131121 |
0.329 |
|
| 2024 |
Mantica F, Iñiguez LP, Marquez Y, Permanyer J, Torres-Mendez A, Cruz J, Franch-Marro X, Tulenko F, Burguera D, Bertrand S, Doyle T, Nouzova M, Currie PD, Noriega FG, Escriva H, ... Arnone MI, et al. Evolution of tissue-specific expression of ancestral genes across vertebrates and insects. Nature Ecology & Evolution. PMID 38622362 DOI: 10.1038/s41559-024-02398-5 |
0.352 |
|
| 2023 |
Marlétaz F, Couloux A, Poulain J, Labadie K, Da Silva C, Mangenot S, Noel B, Poustka AJ, Dru P, Pegueroles C, Borra M, Lowe EK, Lhomond G, Besnardeau L, Le Gras S, ... ... Arnone MI, et al. Analysis of the sea urchin genome highlights contrasting trends of genomic and regulatory evolution in deuterostomes. Cell Genomics. 3: 100295. PMID 37082140 DOI: 10.1016/j.xgen.2023.100295 |
0.558 |
|
| 2022 |
Skvortsova K, Bertrand S, Voronov D, Duckett PE, Ross SE, Magri MS, Maeso I, Weatheritt RJ, Gómez Skarmeta JL, Arnone MI, Escriva H, Bogdanovic O. Active DNA demethylation of developmental -regulatory regions predates vertebrate origins. Science Advances. 8: eabn2258. PMID 36459547 DOI: 10.1126/sciadv.abn2258 |
0.327 |
|
| 2022 |
Schwaiger M, Andrikou C, Dnyansagar R, Murguia PF, Paganos P, Voronov D, Zimmermann B, Lebedeva T, Schmidt HA, Genikhovich G, Benvenuto G, Arnone MI, Technau U. An ancestral Wnt-Brachyury feedback loop in axial patterning and recruitment of mesoderm-determining target genes. Nature Ecology & Evolution. 6: 1921-1939. PMID 36396969 DOI: 10.1038/s41559-022-01905-w |
0.393 |
|
| 2022 |
Paganos P, Ullrich-Lüter E, Caccavale F, Zakrzewski A, Voronov D, Fournon-Berodia I, Cocurullo M, Lüter C, Arnone MI. A New Model Organism to Investigate Extraocular Photoreception: Opsin and Retinal Gene Expression in the Sea Urchin . Cells. 11. PMID 36078045 DOI: 10.3390/cells11172636 |
0.346 |
|
| 2022 |
Paganos P, Ronchi P, Carl J, Mizzon G, Martinez P, Benvenuto G, Arnone MI. Integrating single cell transcriptomics and volume electron microscopy confirms the presence of pancreatic acinar-like cells in sea urchins. Frontiers in Cell and Developmental Biology. 10: 991664. PMID 36060803 DOI: 10.3389/fcell.2022.991664 |
0.426 |
|
| 2020 |
Arnone MI, Oliveri P. Unravelling the evolutionary history of kisspeptin. Elife. 9. PMID 32538354 DOI: 10.7554/Elife.58599 |
0.314 |
|
| 2019 |
Annunziata R, Andrikou C, Perillo M, Cuomo C, Arnone MI. Development and evolution of gut structures: from molecules to function. Cell and Tissue Research. 377: 445-458. PMID 31446445 DOI: 10.1007/S00441-019-03093-9 |
0.361 |
|
| 2019 |
Lowe EK, Cuomo C, Voronov D, Arnone MI. Using ATAC-seq and RNA-seq to increase resolution in GRN connectivity. Methods in Cell Biology. 151: 115-126. PMID 30948003 DOI: 10.1016/Bs.Mcb.2018.11.001 |
0.424 |
|
| 2018 |
Arnone MI, Oliveri P, Martinez P. A conceptual history of the "regulatory genome": From Theodor Boveri to Eric Davidson. Marine Genomics. PMID 30501998 DOI: 10.1016/J.Margen.2018.11.003 |
0.569 |
|
| 2018 |
Perillo M, Paganos P, Mattiello T, Cocurullo M, Oliveri P, Arnone MI. New Neuronal Subtypes With a "Pre-Pancreatic" Signature in the Sea Urchin . Frontiers in Endocrinology. 9: 650. PMID 30450080 DOI: 10.3389/Fendo.2018.00650 |
0.326 |
|
| 2018 |
Wood NJ, Mattiello T, Rowe ML, Ward L, Perillo M, Arnone MI, Elphick MR, Oliveri P. Neuropeptidergic Systems in Pluteus Larvae of the Sea Urchin : Neurochemical Complexity in a "Simple" Nervous System. Frontiers in Endocrinology. 9: 628. PMID 30410468 DOI: 10.3389/Fendo.2018.00628 |
0.41 |
|
| 2018 |
Anishchenko E, Arnone MI, D'Aniello S. in sea urchin development: implications in neurogenesis, ciliogenesis and skeletal patterning. Evodevo. 9: 5. PMID 29479411 DOI: 10.1186/S13227-018-0094-1 |
0.444 |
|
| 2017 |
Burguera D, Marquez Y, Racioppi C, Permanyer J, Torres-Méndez A, Esposito R, Albuixech-Crespo B, Fanlo L, D'Agostino Y, Gohr A, Navas-Perez E, Riesgo A, Cuomo C, Benvenuto G, Christiaen LA, ... ... Arnone MI, et al. Evolutionary recruitment of flexible Esrp-dependent splicing programs into diverse embryonic morphogenetic processes. Nature Communications. 8: 1799. PMID 29180615 DOI: 10.1038/S41467-017-01961-Y |
0.386 |
|
| 2017 |
Lowe EK, Cuomo C, Arnone MI. Omics approaches to study gene regulatory networks for development in echinoderms. Briefings in Functional Genomics. 16: 299-308. PMID 28957458 DOI: 10.1093/Bfgp/Elx012 |
0.414 |
|
| 2016 |
Arnone MI, Andrikou C, Annunziata R. Echinoderm systems for gene regulatory studies in evolution and development Current Opinion in Genetics & Development. 39: 129-137. PMID 27389072 DOI: 10.1016/J.Gde.2016.05.027 |
0.442 |
|
| 2016 |
Rizzo F, Coffman JA, Arnone MI. An Elk transcription factor is required for Runx-dependent survival signaling in the sea urchin embryo. Developmental Biology. 416: 173-186. PMID 27235147 DOI: 10.1016/J.Ydbio.2016.05.026 |
0.381 |
|
| 2016 |
Perillo M, Wang YJ, Leach SD, Arnone MI. A pancreatic exocrine-like cell regulatory circuit operating in the upper stomach of the sea urchin Strongylocentrotus purpuratus larva. Bmc Evolutionary Biology. 16: 117. PMID 27230062 DOI: 10.1186/S12862-016-0686-0 |
0.367 |
|
| 2016 |
Mao CA, Agca C, Mocko-Strand JA, Wang J, Ullrich-Lüter E, Pan P, Wang SW, Arnone MI, Frishman LJ, Klein WH. Substituting mouse transcription factor Pou4f2 with a sea urchin orthologue restores retinal ganglion cell development. Proceedings. Biological Sciences / the Royal Society. 283. PMID 26962139 DOI: 10.1098/Rspb.2015.2978 |
0.404 |
|
| 2016 |
Valero-Gracia A, Petrone L, Oliveri P, Nilsson D, Arnone MI. Non-directional Photoreceptors in the Pluteus of Strongylocentrotus purpuratus Frontiers in Ecology and Evolution. 4. DOI: 10.3389/Fevo.2016.00127 |
0.36 |
|
| 2015 |
Arnone MI, Hejnol A. Genomics going wild: Marine sampling for studies of evolution and development. Marine Genomics. PMID 26555400 DOI: 10.1016/J.Margen.2015.11.003 |
0.306 |
|
| 2015 |
D'Aniello S, Delroisse J, Valero-Gracia A, Lowe EK, Byrne M, Cannon JT, Halanych KM, Elphick MR, Mallefet J, Kaul-Strehlow S, Lowe CJ, Flammang P, Ullrich-Lüter E, Wanninger A, Arnone MI. Opsin evolution in the Ambulacraria. Marine Genomics. PMID 26472700 DOI: 10.1016/J.Margen.2015.10.001 |
0.337 |
|
| 2015 |
Andrikou C, Pai CY, Su YH, Arnone MI. Logics and properties of a genetic regulatory program that drives embryonic muscle development in an echinoderm. Elife. 4. PMID 26218224 DOI: 10.7554/Elife.07343 |
0.421 |
|
| 2015 |
Elphick MR, Semmens DC, Blowes LM, Levine J, Lowe CJ, Arnone MI, Clark MS. Reconstructing SALMFamide Neuropeptide Precursor Evolution in the Phylum Echinodermata: Ophiuroid and Crinoid Sequence Data Provide New Insights. Frontiers in Endocrinology. 6: 2. PMID 25699014 DOI: 10.3389/Fendo.2015.00002 |
0.314 |
|
| 2015 |
Andrikou C, Arnone MI. Too many ways to make a muscle: Evolution of GRNs governing myogenesis Zoologischer Anzeiger – a Journal of Comparative Zoology. 256: 2-13. DOI: 10.1016/J.Jcz.2015.03.005 |
0.472 |
|
| 2014 |
Perillo M, Arnone MI. Characterization of insulin-like peptides (ILPs) in the sea urchin Strongylocentrotus purpuratus: insights on the evolution of the insulin family. General and Comparative Endocrinology. 205: 68-79. PMID 24971803 DOI: 10.1016/J.Ygcen.2014.06.014 |
0.379 |
|
| 2014 |
Annunziata R, Arnone MI. A dynamic regulatory network explains ParaHox gene control of gut patterning in the sea urchin Development. 141: 2462-2472. PMID 24850857 DOI: 10.1242/Dev.105775 |
0.441 |
|
| 2014 |
Annunziata R, Perillo M, Andrikou C, Cole AG, Martinez P, Arnone MI. Pattern and process during sea urchin gut morphogenesis: the regulatory landscape. Genesis (New York, N.Y. : 2000). 52: 251-68. PMID 24376127 DOI: 10.1002/Dvg.22738 |
0.567 |
|
| 2013 |
Andrikou C, Iovene E, Rizzo F, Oliveri P, Arnone MI. Myogenesis in the sea urchin embryo: the molecular fingerprint of the myoblast precursors. Evodevo. 4: 33. PMID 24295205 DOI: 10.1186/2041-9139-4-33 |
0.441 |
|
| 2013 |
Annunziata R, Martinez P, Arnone MI. Intact cluster and chordate-like expression of ParaHox genes in a sea star. Bmc Biology. 11: 68. PMID 23803323 DOI: 10.1186/1741-7007-11-68 |
0.596 |
|
| 2013 |
Ikuta T, Chen YC, Annunziata R, Ting HC, Tung CH, Koyanagi R, Tagawa K, Humphreys T, Fujiyama A, Saiga H, Satoh N, Yu JK, Arnone MI, Su YH. Identification of an intact ParaHox cluster with temporal colinearity but altered spatial colinearity in the hemichordate Ptychodera flava. Bmc Evolutionary Biology. 13: 129. PMID 23802544 DOI: 10.1186/1471-2148-13-129 |
0.408 |
|
| 2013 |
Peterson KJ, Su YH, Arnone MI, Swalla B, King BL. MicroRNAs support the monophyly of enteropneust hemichordates. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 320: 368-74. PMID 23703796 DOI: 10.1002/Jez.B.22510 |
0.306 |
|
| 2013 |
Ullrich-Lüter EM, D'Aniello S, Arnone MI. C-opsin expressing photoreceptors in echinoderms. Integrative and Comparative Biology. 53: 27-38. PMID 23667044 DOI: 10.1093/Icb/Ict050 |
0.351 |
|
| 2011 |
Ullrich-Lüter EM, Dupont S, Arboleda E, Hausen H, Arnone MI. Unique system of photoreceptors in sea urchin tube feet. Proceedings of the National Academy of Sciences of the United States of America. 108: 8367-72. PMID 21536888 DOI: 10.1073/Pnas.1018495108 |
0.406 |
|
| 2011 |
Gregoris TBD, Rupp O, Klages S, Knaust F, Bekel T, Kube M, Burgess JG, Arnone MI, Goesmann A, Reinhardt R, Clare AS. Deep sequencing of naupliar-, cyprid- and adult-specific normalised Expressed Sequence Tag (EST) libraries of the acorn barnacle Balanus amphitrite. Biofouling. 27: 367-374. PMID 21526438 DOI: 10.1080/08927014.2011.577211 |
0.347 |
|
| 2009 |
Sirakov M, Zarrella I, Borra M, Rizzo F, Biffali E, Arnone MI, Fiorito G. Selection and validation of a set of reliable reference genes for quantitative RT-PCR studies in the brain of the Cephalopod Mollusc Octopus vulgaris Bmc Molecular Biology. 10: 70-70. PMID 19602224 DOI: 10.1186/1471-2199-10-70 |
0.355 |
|
| 2009 |
Cole AG, Arnone MI. Fluorescent in situ hybridization reveals multiple expression domains for SpBrn1/2/4 and identifies a unique ectodermal cell type that co-expresses the ParaHox gene SpLox. Gene Expression Patterns : Gep. 9: 324-8. PMID 19250980 DOI: 10.1016/J.Gep.2009.02.005 |
0.41 |
|
| 2009 |
Cole AG, Rizzo F, Martinez P, Fernandez-Serra M, Arnone MI. Two ParaHox genes, SpLox and SpCdx, interact to partition the posterior endoderm in the formation of a functional gut. Development (Cambridge, England). 136: 541-9. PMID 19144720 DOI: 10.1242/Dev.029959 |
0.584 |
|
| 2006 |
Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, et al. The genome of the sea urchin Strongylocentrotus purpuratus. Science (New York, N.Y.). 314: 941-52. PMID 17095691 DOI: 10.1126/Science.1133609 |
0.5 |
|
| 2006 |
Raible F, Tessmar-Raible K, Arboleda E, Kaller T, Bork P, Arendt D, Arnone MI. Opsins and clusters of sensory G-protein-coupled receptors in the sea urchin genome. Developmental Biology. 300: 461-75. PMID 17067569 DOI: 10.1016/J.Ydbio.2006.08.070 |
0.39 |
|
| 2006 |
Bradham CA, Foltz KR, Beane WS, Arnone MI, Rizzo F, Coffman JA, Mushegian A, Goel M, Morales J, Geneviere AM, Lapraz F, Robertson AJ, Kelkar H, Loza-Coll M, Townley IK, et al. The sea urchin kinome: a first look. Developmental Biology. 300: 180-93. PMID 17027740 DOI: 10.1016/J.Ydbio.2006.08.074 |
0.321 |
|
| 2006 |
Rizzo F, Fernandez-Serra M, Squarzoni P, Archimandritis A, Arnone MI. Identification and developmental expression of the ets gene family in the sea urchin (Strongylocentrotus purpuratus). Developmental Biology. 300: 35-48. PMID 16997294 DOI: 10.1016/J.Ydbio.2006.08.012 |
0.403 |
|
| 2006 |
Arnone MI, Rizzo F, Annunciata R, Cameron RA, Peterson KJ, Martínez P. Genetic organization and embryonic expression of the ParaHox genes in the sea urchin S. purpuratus: insights into the relationship between clustering and colinearity. Developmental Biology. 300: 63-73. PMID 16959236 DOI: 10.1016/J.Ydbio.2006.07.037 |
0.559 |
|
| 2004 |
Arnone MI, Dmochowski IJ, Gache C. Using reporter genes to study cis-regulatory elements. Methods in Cell Biology. 74: 621-52. PMID 15575624 DOI: 10.1016/S0091-679X(04)74025-X |
0.411 |
|
| 2004 |
Fernandez-Serra M, Consales C, Livigni A, Arnone MI. Role of the ERK-mediated signaling pathway in mesenchyme formation and differentiation in the sea urchin embryo. Developmental Biology. 268: 384-402. PMID 15063175 DOI: 10.1016/J.Ydbio.2003.12.029 |
0.388 |
|
| 2002 |
Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C, Otim O, Brown CT, Livi CB, Lee PY, Revilla R, ... ... Arnone MI, et al. A provisional regulatory gene network for specification of endomesoderm in the sea urchin embryo. Developmental Biology. 246: 162-90. PMID 12027441 DOI: 10.1006/Dbio.2002.0635 |
0.438 |
|
| 2002 |
Consales C, Arnone MI. Functional characterization of Ets-binding sites in the sea urchin embryo: three base pair conversions redirect expression from mesoderm to ectoderm and endoderm. Gene. 287: 75-81. PMID 11992725 DOI: 10.1016/S0378-1119(01)00891-5 |
0.412 |
|
| 2002 |
Arnone MI. Bringing order to organogenesis. Nature Genetics. 30: 348-50. PMID 11925555 DOI: 10.1038/Ng0402-348 |
0.433 |
|
| 2002 |
Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C, Otim O, Brown CT, Livi CB, Lee PY, Revilla R, ... ... Arnone MI, et al. A genomic regulatory network for development. Science (New York, N.Y.). 295: 1669-78. PMID 11872831 DOI: 10.1126/Science.1069883 |
0.417 |
|
| 2001 |
Martin EL, Consales C, Davidson EH, Arnone MI. Evidence for a mesodermal embryonic regulator of the sea urchin CyIIa gene. Developmental Biology. 236: 46-63. PMID 11456443 DOI: 10.1006/Dbio.2001.0285 |
0.466 |
|
| 2001 |
Zannini M, Avantaggiato V, Biffali E, Arnone MI, Sato K, Pischetola M, Taylor BA, Phillips SJ, Simeone A, Lauro RD. Erratum: TTF-2, a new forkhead protein, shows a temporal expression in the developing thyroid which is consistent with a role controlling the onset of differentiation (EMBO (1997) 16 (3185-3197)) The Embo Journal. 20. DOI: 10.1093/Emboj/20.8.2108 |
0.312 |
|
| 1998 |
Bogarad LD, Arnone MI, Chang C, Davidson EH. Interference with gene regulation in living sea urchin embryos: transcription factor knock out (TKO), a genetically controlled vector for blockade of specific transcription factors. Proceedings of the National Academy of Sciences of the United States of America. 95: 14827-32. PMID 9843974 DOI: 10.1073/Pnas.95.25.14827 |
0.439 |
|
| 1997 |
Zannini M, Avantaggiato V, Biffali E, Arnone MI, Sato K, Pischetola M, Taylor BA, Phillips SJ, Simeone A, Di Lauro R. TTF-2, a new forkhead protein, shows a temporal expression in the developing thyroid which is consistent with a role in controlling the onset of differentiation. The Embo Journal. 16: 3185-97. PMID 9214635 DOI: 10.1093/Emboj/16.11.3185 |
0.425 |
|
| 1996 |
Zannini M, Acebron A, Felice MD, Arnone MI, Martin-Pérez J, Santisteban P, Lauro RD. Mapping and Functional Role of Phosphorylation Sites in the Thyroid Transcription Factor-1 (TTF-1) Journal of Biological Chemistry. 271: 2249-2254. PMID 8567686 DOI: 10.1074/Jbc.271.4.2249 |
0.324 |
|
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