Year |
Citation |
Score |
2008 |
Martinez HM, Maizel JV, Shapiro BA. RNA2D3D: A program for generating, viewing, and comparing 3-dimensional models of RNA Journal of Biomolecular Structure and Dynamics. 25: 669-683. PMID 18399701 DOI: 10.1080/07391102.2008.10531240 |
0.39 |
|
2003 |
Le SY, Chen JH, Konings D, Maizel JV. Discovering well-ordered folding patterns in nucleotide sequences. Bioinformatics (Oxford, England). 19: 354-61. PMID 12584120 DOI: 10.1093/Bioinformatics/Btf826 |
0.416 |
|
2002 |
Le SY, Zhang K, Maizel JV. RNA molecules with structure dependent functions are uniquely folded. Nucleic Acids Research. 30: 3574-82. PMID 12177299 DOI: 10.1093/Nar/Gkf473 |
0.433 |
|
2001 |
Le S, Liu W, Chen J, Maizel JV. Local thermodynamic stability scores are well represented by a non-central student's t distribution. Journal of Theoretical Biology. 210: 411-423. PMID 11403562 DOI: 10.1006/Jtbi.2001.2318 |
0.408 |
|
2000 |
Tsai CJ, Maizel JV, Nussinov R. Anatomy of protein structures: visualizing how a one-dimensional protein chain folds into a three-dimensional shape. Proceedings of the National Academy of Sciences of the United States of America. 97: 12038-43. PMID 11050234 DOI: 10.1073/Pnas.97.22.12038 |
0.324 |
|
2000 |
Chen S, Le S, Newton DL, Maizel JV, Rybak SM. A gender-specific mRNA encoding a cytotoxic ribonuclease contains a 3′ UTR of unusual length and structure Nucleic Acids Research. 28: 2375-2382. PMID 10871370 DOI: 10.1093/Nar/28.12.2375 |
0.423 |
|
2000 |
Chen J, Le S, Maizel JV. Prediction of common secondary structures of RNAs: a genetic algorithm approach Nucleic Acids Research. 28: 991-999. PMID 10648793 DOI: 10.1093/Nar/28.4.991 |
0.41 |
|
1999 |
Tsai CJ, Maizel JV, Nussinov R. Distinguishing between sequential and nonsequentially folded proteins: implications for folding and misfolding. Protein Science : a Publication of the Protein Society. 8: 1591-604. PMID 10452603 DOI: 10.1110/Ps.8.8.1591 |
0.333 |
|
1998 |
Le S, Chen J, Pattabiraman N, Maizel JV. Ion-RNA interactions in the RNA pseudoknot of a ribosomal frameshifting site: molecular modeling studies. Journal of Biomolecular Structure & Dynamics. 16: 1-11. PMID 9745889 DOI: 10.1080/07391102.1998.10508221 |
0.349 |
|
1997 |
Le S, Maizel JV. A common RNA structural motif involved in the internal initiation of translation of cellular mRNAs. Nucleic Acids Research. 25: 362-369. PMID 9016566 DOI: 10.1093/Nar/25.2.362 |
0.435 |
|
1995 |
Le SY, Sonenberg N, Maizel JV. Unusual folding regions and ribosome landing pad within hepatitis C virus and pestivirus RNAs. Gene. 154: 137-43. PMID 7890155 DOI: 10.1016/0378-1119(94)00859-Q |
0.384 |
|
1995 |
Le S, Zhang K, Maizel JV. A method for predicting common structures of homologous RNAs Computers and Biomedical Research. 28: 53-66. PMID 7542191 DOI: 10.1006/Cbmr.1995.1005 |
0.433 |
|
1994 |
Le SY, Sonenberg N, Maizel JV. Distinct structural elements and internal entry of ribosomes in mRNA3 encoded by infectious bronchitis virus. Virology. 198: 405-11. PMID 8259681 DOI: 10.1006/Viro.1994.1051 |
0.446 |
|
1994 |
Le S, Pattabiraman N, Maizel JV. RNA tertiary structure of the HIV RRE domain II containing non-Watson-Crick base pairs GG and GA: molecular modeling studies Nucleic Acids Research. 22: 3966-3976. PMID 7937119 DOI: 10.1093/Nar/22.19.3966 |
0.369 |
|
1993 |
Le SY, Chen JH, Sonenberg N, Maizel JV. Conserved tertiary structural elements in the 5' nontranslated region of cardiovirus, aphthovirus and hepatitis A virus RNAs. Nucleic Acids Research. 21: 2445-51. PMID 8389442 DOI: 10.1093/Nar/21.10.2445 |
0.443 |
|
1993 |
Le S, Chen J, Maizel JV. Prediction of alternative RNA secondary structures based on fluctuating thermodynamic parameters Nucleic Acids Research. 21: 2173-2178. PMID 7684834 DOI: 10.1093/Nar/21.9.2173 |
0.359 |
|
1992 |
Dayton ET, Konings DA, Powell DM, Shapiro BA, Butini L, Maizel JV, Dayton AI. Extensive sequence-specific information throughout the CAR/RRE, the target sequence of the human immunodeficiency virus type 1 Rev protein. Journal of Virology. 66: 1139-51. PMID 1731093 DOI: 10.1128/Jvi.66.2.1139-1151.1992 |
0.404 |
|
1992 |
Le SY, Shapiro BA, Chen JH, Nussinov R, Maizel JV. RNA pseudoknots downstream of the frameshift sites of retroviruses. Genetic Analysis, Techniques and Applications. 8: 191-205. PMID 1663382 DOI: 10.1016/1050-3862(91)90013-H |
0.446 |
|
1992 |
Chen J, Le S, Maizel JV. A procedure for RNA pseudoknot prediction Bioinformatics. 8: 243-248. PMID 1378773 DOI: 10.1093/Bioinformatics/8.3.243 |
0.413 |
|
1992 |
Le SY, Chen JH, Sonenberg N, Maizel JV. Conserved tertiary structure elements in the 5' untranslated region of human enteroviruses and rhinoviruses. Virology. 191: 858-66. PMID 1333125 DOI: 10.1016/0042-6822(92)90261-M |
0.421 |
|
1992 |
Konings DA, Nash MA, Maizel JV, Arlinghaus RB. Novel GACG-hairpin pair motif in the 5' untranslated region of type C retroviruses related to murine leukemia virus. Journal of Virology. 66: 632-40. PMID 1309906 DOI: 10.1128/Jvi.66.2.632-640.1992 |
0.447 |
|
1991 |
Le S, Chen J, Maizel JV. Detection of unusual RNA folding regions in HIV and SIV sequences Bioinformatics. 7: 51-55. PMID 2004274 DOI: 10.1093/Bioinformatics/7.1.51 |
0.444 |
|
1990 |
Le SY, Malim MH, Cullen BR, Maizel JV. A highly conserved RNA folding region coincident with the Rev response element of primate immunodeficiency viruses Nucleic Acids Research. 18: 1613-1623. PMID 2326200 DOI: 10.1093/Nar/18.6.1613 |
0.443 |
|
1990 |
Tiley LS, Brown PH, Shu-Yun Le, Maizel JV, Clements JE, Cullen BR. Visna virus encodes a post-transcriptional regulator of viral structural gene expression Proceedings of the National Academy of Sciences of the United States of America. 87: 7497-7501. PMID 2170981 DOI: 10.1073/Pnas.87.19.7497 |
0.421 |
|
1990 |
Chen J, Le S, Shapiro BA, Currey KM, Maizel JV. A computational procedure for assessing the significance of RNA secondary structure. Bioinformatics. 6: 7-18. PMID 1690072 DOI: 10.1093/Bioinformatics/6.1.7 |
0.392 |
|
1990 |
Tiley LS, Brown PH, Le S, Maizel JV, Clements JE, Cullen BR. Correction and Clarification: Visna Virus Encodes a Post-Transcriptional Regulator of Viral Structural Gene Expression Proceedings of the National Academy of Sciences of the United States of America. 87: 9508. DOI: 10.1073/Pnas.87.23.9508D |
0.318 |
|
1989 |
Malim MH, Hauber J, Le SY, Maizel JV, Cullen BR. The HIV-1 rev trans-activator acts through a structured target sequence to activate nuclear export of unspliced viral mRNA Nature. 338: 254-257. PMID 2784194 DOI: 10.1038/338254A0 |
0.396 |
|
1989 |
Le SY, Nussinov R, Maizel JV. Tree graphs of RNA secondary structures and their comparisons. Computers and Biomedical Research, An International Journal. 22: 461-73. PMID 2776449 DOI: 10.1016/0010-4809(89)90039-6 |
0.414 |
|
1989 |
Le S, Chen J, Chatterjee D, Maizel JV. Sequence divergence and open regions of RNA secondary structures in the envelope regions of the 17 human immunodeficiency virus isolates Nucleic Acids Research. 17: 3275-3288. PMID 2726458 DOI: 10.1093/Nar/17.8.3275 |
0.419 |
|
1989 |
Malim MH, Bohnlein S, Fenrick R, Le SY, Maizel JV, Cullen BR. Functional comparison of the Rev trans-activators encoded by different primate immunodeficiency virus species Proceedings of the National Academy of Sciences of the United States of America. 86: 8222-8226. PMID 2682638 DOI: 10.1073/Pnas.86.21.8222 |
0.317 |
|
1989 |
Agrawal S, Ikeuchi T, Sun D, Sarin PS, Konopka A, Maizel J, Zamecnik PC. Inhibition of human immunodeficiency virus in early infected and chronically infected cells by antisense oligodeoxynucleotides and their phosphorothioate analogues. Proceedings of the National Academy of Sciences of the United States of America. 86: 7790-4. PMID 2682627 DOI: 10.1073/Pnas.86.20.7790 |
0.364 |
|
1989 |
Brandt-Rauf PW, Pincus MR, Carty RP, Lubowsky J, Avitable M, Kung HF, Maizel J. Conformational effects of amino acid substitutions at positions 10, 12, and 13 in the P21 protein. Journal of Protein Chemistry. 8: 79-86. PMID 2669815 DOI: 10.1007/Bf01025080 |
0.312 |
|
1989 |
Nakata K, Maizel JV. Prediction of operator-binding protein by discriminant analysis. Gene Analysis Techniques. 6: 111-119. PMID 2606442 DOI: 10.1016/0735-0651(89)90001-0 |
0.38 |
|
1989 |
Fenrick R, Malim MH, Hauber J, Le SY, Maizel J, Cullen BR. Functional analysis of the Tat trans activator of human immunodeficiency virus type 2 Journal of Virology. 63: 5006-5012. PMID 2555537 DOI: 10.1128/Jvi.63.12.5006-5012.1989 |
0.316 |
|
1989 |
Le S, Chen J, Maizel JV. Thermodynamic stability and statistical significance of potential stem-loop structures situated at the frameshift sites of retroviruses Nucleic Acids Research. 17: 6143-6152. PMID 2549508 DOI: 10.1093/Nar/17.15.6143 |
0.42 |
|
1989 |
Hanly SM, Rimsky LT, Malim MH, Kim JH, Hauber J, Duc Dodon M, Le SY, Maizel JV, Cullen BR, Greene WC. Comparative analysis of the HTLV-I Rex and HIV-1 Rev trans-regulatory proteins and their RNA response elements Genes &Amp; Development. 3: 1534-1544. PMID 2482226 DOI: 10.1101/Gad.3.10.1534 |
0.404 |
|
1989 |
Le S, Maizel JV. A method for assessing the statistical significance of RNA folding. Journal of Theoretical Biology. 138: 495-510. PMID 2480496 DOI: 10.1016/S0022-5193(89)80047-5 |
0.372 |
|
1989 |
Le SY, Owens J, Nussinov R, Chen JH, Shapiro B, Maizel JV. RNA secondary structures: comparison and determination of frequently recurring substructures by consensus. Computer Applications in the Biosciences : Cabios. 5: 205-10. PMID 2475224 DOI: 10.1093/Bioinformatics/5.3.205 |
0.386 |
|
1989 |
Margalit H, Shapiro BA, Oppenheim AB, Maizel JV. Detection of common motifs in RNA secondary structures. Nucleic Acids Research. 17: 4829-45. PMID 2473442 DOI: 10.1093/Nar/17.12.4829 |
0.359 |
|
1988 |
Le SY, Currey KM, Nussinov R, Maizel JV. Studies of frequently recurring substructures in human alpha-like globin mRNA precursors. Computers and Biomedical Research, An International Journal. 20: 563-82. PMID 3691069 DOI: 10.1016/0010-4809(87)90026-7 |
0.353 |
|
1988 |
Le SY, Chen JH, Braun MJ, Gonda MA, Maizel JV. Stability of RNA stem-loop structure and distribution of non-random structure in the human immunodeficiency virus (HIV-I). Nucleic Acids Research. 16: 5153-68. PMID 3387221 DOI: 10.1093/Nar/16.11.5153 |
0.452 |
|
1988 |
Owens J, Chatterjee D, Nussinov R, Konopka AK, Maizel JV. A fixed-point alignment technique for detection of recurrent and common sequence motifs associated with biological features. Computer Applications in the Biosciences : Cabios. 4: 73-7. PMID 3383006 DOI: 10.1093/Bioinformatics/4.1.73 |
0.355 |
|
1988 |
Nussinov R, Barber A, Maizel JV. The distributions of nucleotides near bacterial transcription initiation and termination sites show distinct signals that may affect DNA geometry. Journal of Molecular Evolution. 26: 187-97. PMID 3129566 DOI: 10.1007/Bf02099851 |
0.341 |
|
1988 |
Nakata K, Kanehisa M, Maizel JV. Discriminant analysis of promoter regions in Escherichia coli sequences. Bioinformatics. 4: 367-371. PMID 3046714 DOI: 10.1093/Bioinformatics/4.3.367 |
0.373 |
|
1988 |
Le SY, Chen JH, Nussinov R, Maizel JV. An improved secondary structure computation method and its application to intervening sequence in the human alpha-like globin mRNA precursors. Computer Applications in the Biosciences : Cabios. 4: 337-44. PMID 3046713 DOI: 10.1093/Bioinformatics/4.3.337 |
0.43 |
|
1988 |
Rivera VM, Welsh JD, Maizel JV. Comparative sequence analysis of the 5' noncoding region of the enteroviruses and rhinoviruses. Virology. 165: 42-50. PMID 2838971 DOI: 10.1016/0042-6822(88)90656-3 |
0.4 |
|
1988 |
Le S, Chen J, Currey KM, Maizel JV. A program for predicting significant RNA secondary structures. Bioinformatics. 4: 153-159. PMID 2454711 DOI: 10.1093/Bioinformatics/4.1.153 |
0.393 |
|
1987 |
Chatterjee D, Maizel JV. Sequence analysis of proteins Gene Analysis Techniques. 4: 27-40. PMID 3507388 DOI: 10.1016/0735-0651(87)90015-X |
0.369 |
|
1987 |
Konopka AK, Smythers GW, Owens J, Maizel JV. Distance analysis helps to establish characteristic motifs in intron sequences. Gene Analysis Techniques. 4: 63-74. PMID 3333760 DOI: 10.1016/0735-0651(87)90020-3 |
0.362 |
|
1987 |
Brandt-Rauf PW, Pincus MR, Carty RP, Maizel J, Lubowsky J, Avitable M. Correlation of structure with transforming activity of the P21 proteins with substitutions at positions 12 and 16 Journal of Protein Chemistry. 6: 375-385. DOI: 10.1007/Bf02343336 |
0.305 |
|
1987 |
Brandt-Rauf PW, Pincus MR, Maizel J, Carty RP, Lubowsky J, Avitable M, Shipley JB, Wagner RR. Structural effects of amino acid substitutions on the matrix protein of vesicular stomatitis virus Journal of Protein Chemistry. 6: 463-472. DOI: 10.1007/Bf00276732 |
0.348 |
|
1986 |
Nussinov R, Owens J, Maizel JV. Sequence signals in eukaryotic upstream regions. Biochimica Et Biophysica Acta. 866: 109-19. PMID 3955051 DOI: 10.1016/0167-4781(86)90107-7 |
0.344 |
|
1986 |
Lockard RE, Currey K, Browner M, Lawrence C, Maizel J. Secondary structure model for mouse βMaj globin mRNA derived from enzymatic digestion data, comparative sequence and computer analysis Nucleic Acids Research. 14: 5827-5841. PMID 3737415 DOI: 10.1093/Nar/14.14.5827 |
0.392 |
|
1985 |
Nussinov R, Shapiro B, Lipkin LE, Maizel JV. Enhancer elements share local homologous twist-angle variations with a helical periodicity. Biochimica Et Biophysica Acta. 783: 246-57. PMID 6095913 DOI: 10.1016/0167-4781(84)90035-6 |
0.358 |
|
1985 |
Bassel-Duby R, Jayasuriya A, Chatterjee D, Sonenberg N, Maizel JV, Fields BN. Sequence of reovirus haemagglutinin predicts a coiled-coil structure. Nature. 315: 421-3. PMID 4000269 DOI: 10.1038/315421A0 |
0.442 |
|
1985 |
Baroudy BM, Ticehurst JR, Miele TA, Maizel JV, Purcell RH, Feinstone SM. Sequence analysis of hepatitis A virus cDNA coding for capsid proteins and RNA polymerase Proceedings of the National Academy of Sciences of the United States of America. 82: 2143-2147. PMID 2984684 DOI: 10.1073/Pnas.82.7.2143 |
0.434 |
|
1985 |
Messer LI, Currey KM, O'Neill BJ, Maizel JV, Levin JG, Gerwin BI. Functional analysis of reverse transcription by a frameshift pol mutant of murine leukemia virus. Virology. 146: 146-52. PMID 2412343 DOI: 10.1016/0042-6822(85)90062-5 |
0.396 |
|
1984 |
Chatterjee D, Maizel JV. Homology of adenoviral E3 glycoprotein with HLA-DR heavy chain Proceedings of the National Academy of Sciences of the United States of America. 81: 6039-6043. PMID 6592599 DOI: 10.1073/Pnas.81.19.6039 |
0.321 |
|
1984 |
Nussinov R, Shapiro B, Lipkin LE, Maizel JV. DNAase I hypersensitive sites may be correlated with genomic regions of large structural variation. Journal of Molecular Biology. 177: 591-607. PMID 6090673 DOI: 10.1016/0022-2836(84)90039-1 |
0.313 |
|
1983 |
Chin WW, Maizel JV, Habener JF. Difference in sizes of human compared to murine alpha-subunits of the glycoprotein hormones arises by four-codon gene deletion or insertion. Endocrinology. 112: 482-5. PMID 6184214 DOI: 10.1210/Endo-112-2-482 |
0.497 |
|
1982 |
Shapiro BA, Lipkin LE, Maizel J. An interactive technique for the display of nucleic acid secondary structure Nucleic Acids Research. 10: 7041-7052. PMID 7177857 DOI: 10.1093/Nar/10.21.7041 |
0.315 |
|
1982 |
Lipman DJ, Maizel J. Comparative analysis of nucleic acid sequences by their general constraints Nucleic Acids Research. 10: 2723-2739. PMID 7079183 DOI: 10.1093/Nar/10.8.2723 |
0.336 |
|
1982 |
Lenk RP, Maizel JV, Crouch RJ. Expression of Two Late Adenovirus Genes Is Altered by Introducing Antibodies against Ribonucleoprotein into Living HeLa Cells Febs Journal. 121: 475-482. PMID 7056251 DOI: 10.1111/J.1432-1033.1982.Tb05812.X |
0.304 |
|
1982 |
Dhar R, Ellis RW, Shih TY, Oroszlan S, Shapiro B, Maizel J, Lowy D, Scolnick E. Nucleotide sequence of the p21 transforming protein of Harvey murine sarcoma virus. Science. 217: 934-936. PMID 6287572 DOI: 10.1126/Science.6287572 |
0.39 |
|
1981 |
Maizel JV, Lenk RP. Enhanced graphic matrix analysis of nucleic acid and protein sequences. Proceedings of the National Academy of Sciences of the United States of America. 78: 7665-7669. PMID 6801656 DOI: 10.1073/Pnas.78.12.7665 |
0.408 |
|
1981 |
McClain K, Stewart M, Sullivan M, Maizel JV. Ribosomal binding sites on poliovirus RNA Behavioural Brain Research. 3: 150-167. DOI: 10.1016/0042-6822(81)90144-6 |
0.371 |
|
1980 |
Vogeli G, Avvedimento EV, Sullivan M, Maizel JV, Lozano G, Adams SL, Pastan I, de Crombrugghe B. Isolation and characterization of genomic DNA coding for α2 type I collagen Nucleic Acids Research. 8: 1823-1837. PMID 7433131 DOI: 10.1093/Nar/8.8.1823 |
0.336 |
|
1980 |
Lenk R, Storch T, Maizel JV. Cell architecture during adenovirus infection Virology. 105: 19-34. PMID 7191175 DOI: 10.1016/0042-6822(80)90152-X |
0.337 |
|
1980 |
Stewart ML, Crouch RJ, Maizel JV. A high-resolution oligonucleotide map generated by restriction of poliovirus type I genomic RNA by ribonuclease III Virology. 104: 375-397. PMID 6249034 DOI: 10.1016/0042-6822(80)90341-4 |
0.378 |
|
1979 |
Shapiro B, Lipkin L, Maizel J. Computerized generation of secondary structure maps for nucleic acids. Computers and Biomedical Research. 12: 545-568. PMID 527320 DOI: 10.1016/0010-4809(79)90037-5 |
0.324 |
|
1979 |
Konkel DA, Maizel JV, Leder P. The evolution and sequence comparison of two recently diverged mouse chromosomal beta--globin genes. Cell. 18: 865-73. PMID 519759 DOI: 10.1016/0092-8674(79)90138-7 |
0.335 |
|
1979 |
Lundquist RE, Sullivan M, Maizel JV. Characterization of a new isolate of poliovirus defective interfering particles Cell. 18: 759-769. PMID 229964 DOI: 10.1016/0092-8674(79)90129-6 |
0.303 |
|
1978 |
Peterlin BM, Sullivan M, Westphal H, Maizel JV. Secondary structure map of psoralen-crosslinked adenovirus DNA studied by electron microscopy. Virology. 86: 391-397. PMID 664238 DOI: 10.1016/0042-6822(78)90079-X |
0.301 |
|
1978 |
Tilghman SM, Tiemeier DC, Seidman JG, Peterlin BM, Sullivan M, Maizel JV, Leder P. Intervening sequence of DNA identified in the structural portion of a mouse beta-globin gene. Proceedings of the National Academy of Sciences of the United States of America. 75: 725-9. PMID 273235 DOI: 10.1073/Pnas.75.2.725 |
0.355 |
|
1978 |
Lundquist RE, Maizel JV. In vivo regulation of the poliovirus RNA polymerase. Virology. 89: 484-493. PMID 213878 DOI: 10.1016/0042-6822(78)90190-3 |
0.382 |
|
1978 |
Meyer J, Lundquist RE, Maizel JV. Structural studies of the RNA component of the poliovirus replication complex. II. Characterization by electron microscopy and autoradiography. Virology. 85: 445-455. PMID 208235 DOI: 10.1016/0042-6822(78)90451-8 |
0.374 |
|
1977 |
Ishibashi M, Chin WW, Maizel JV. The polypeptides of adenovirus IX. Partial purification of early proteins and observations on late proteins of type 5 adenovirus Virology. 83: 1-15. PMID 18625471 DOI: 10.1016/0042-6822(77)90206-9 |
0.513 |
|
1977 |
Meyer J, Neuwald PD, Lai SP, Maizel JV, Westphal H. Electron microscopy of late adenovirus type 2 mRNA hybridized to double-stranded viral DNA. Journal of Virology. 21: 1010-8. PMID 850302 DOI: 10.1128/Jvi.21.3.1010-1018.1977 |
0.32 |
|
1977 |
Meissner HC, Meyer J, Maizel JV, Westphal H. Visualization and mapping of late nuclear adenovirus RNA Cell. 10: 225-235. PMID 837447 DOI: 10.1016/0092-8674(77)90216-1 |
0.4 |
|
1977 |
Chin WW, Maizel JV. The polypeptides of adenovirus VIII. The enrichment of E3 (11,000) in the nuclear matrix fraction Virology. 76: 79-89. PMID 835247 DOI: 10.1016/0042-6822(77)90284-7 |
0.501 |
|
1976 |
Westphal H, Meyer J, Maizel JV. Mapping of adenovirus messenger RNA by electron microscopy. Proceedings of the National Academy of Sciences of the United States of America. 73: 2069-2071. PMID 1064875 DOI: 10.1073/Pnas.73.6.2069 |
0.364 |
|
1976 |
Chin WW, Maizel JV. The polypeptides of adenovirus. VII. Further studies of early polypeptides in vivo and localization of E2 and E2A to the cell plasma membrane. Virology. 71: 518-530. PMID 936473 DOI: 10.1016/0042-6822(76)90378-0 |
0.498 |
|
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