| Year |
Citation |
Score |
| 2020 |
Burnicka-Turek O, Broman MT, Steimle JD, Boukens BJ, Petrenko N, Ikegami K, Nadadur RD, Qiao Y, Arnolds DE, Yang XH, Patel VV, Nobrega MA, Efimov IR, Moskowitz IP. Transcriptional Patterning of the Ventricular Cardiac Conduction System. Circulation Research. PMID 32290757 DOI: 10.1161/Circresaha.118.314460 |
0.415 |
|
| 2020 |
Sun X, Wang Z, Hall JM, Perez-Cervantes C, Ruthenburg AJ, Moskowitz IP, Gribskov M, Yang XH. Chromatin-enriched RNAs mark active and repressive cis-regulation: An analysis of nuclear RNA-seq. Plos Computational Biology. 16: e1007119. PMID 32040509 DOI: 10.1371/Journal.Pcbi.1007119 |
0.344 |
|
| 2019 |
Yang X, Lee Y, Fan H, Sun X, Lussier YA. Identification of common microRNA-mRNA regulatory biomodules in human epithelial cancers. Chinese Science Bulletin = Kexue Tongbao. 55: 3576-3589. PMID 21340045 DOI: 10.1007/S11434-010-4051-1 |
0.321 |
|
| 2018 |
Wang Z, Cunningham JM, Yang XH. CisPi: a transcriptomic score for disclosing cis-acting disease-associated lincRNAs. Bioinformatics (Oxford, England). 34: i664-i670. PMID 30423099 DOI: 10.1093/Bioinformatics/Bty574 |
0.358 |
|
| 2018 |
Steimle JD, Rankin SA, Slagle CE, Bekeny J, Rydeen AB, Chan SS, Kweon J, Yang XH, Ikegami K, Nadadur RD, Rowton M, Hoffmann AD, Lazarevic S, Thomas W, Boyle Anderson EAT, et al. Evolutionarily conserved - pathway orchestrates cardiopulmonary development. Proceedings of the National Academy of Sciences of the United States of America. PMID 30352852 DOI: 10.1073/Pnas.1811624115 |
0.341 |
|
| 2017 |
Yang XH, Nadadur RD, Hilvering CR, Bianchi V, Werner M, Mazurek SR, Gadek M, Shen KM, Goldman JA, Tyan L, Bekeny J, Hall JM, Lee N, Perez-Cervantes C, Burnicka-Turek O, et al. Transcription-factor-dependent enhancer transcription defines a gene regulatory network for cardiac rhythm. Elife. 6. PMID 29280435 DOI: 10.7554/Elife.31683 |
0.419 |
|
| 2017 |
Yang XH, Tang F, Shin J, Cunningham JM. Incorporating genomic, transcriptomic and clinical data: a prognostic and stem cell-like MYC and PRC imbalance in high-risk neuroblastoma. Bmc Systems Biology. 11: 92. PMID 28984200 DOI: 10.1186/S12918-017-0466-5 |
0.346 |
|
| 2017 |
Yang XH, Tang F, Shin J, Cunningham JM. A c-Myc-regulated stem cell-like signature in high-risk neuroblastoma: A systematic discovery (Target neuroblastoma ESC-like signature). Scientific Reports. 7: 41. PMID 28246384 DOI: 10.1038/S41598-017-00122-X |
0.371 |
|
| 2017 |
Yang XH, Nadadur RD, Hilvering CR, Bianchi V, Werner M, Mazurek SR, Gadek M, Shen KM, Goldman JA, Tyan L, Bekeny J, Hall JM, Lee N, Perez-Cervantes C, Burnicka-Turek O, et al. Author response: Transcription-factor-dependent enhancer transcription defines a gene regulatory network for cardiac rhythm Elife. DOI: 10.7554/Elife.31683.021 |
0.368 |
|
| 2016 |
Hoffmann AD, Yang XH, Burnicka-Turek O, Bosman JD, Ren X, Xie L, Steimle JD, Vokes SA, McMahon AP, Kalinichenko VV, Moskowitz IP. Correction: Foxf Genes Integrate Tbx5 and Hedgehog Pathways in the Second Heart Field for Cardiac Septation. Plos Genetics. 12: e1006533. PMID 28033319 DOI: 10.1371/Journal.Pgen.1006533 |
0.311 |
|
| 2016 |
Nadadur RD, Broman MT, Boukens B, Mazurek SR, Yang X, van den Boogaard M, Bekeny J, Gadek M, Ward T, Zhang M, Qiao Y, Martin JF, Seidman CE, Seidman J, Christoffels V, et al. Pitx2 modulates a Tbx5-dependent gene regulatory network to maintain atrial rhythm. Science Translational Medicine. 8: 354ra115. PMID 27582060 DOI: 10.1126/Scitranslmed.Aaf4891 |
0.411 |
|
| 2016 |
Li H, Achour I, Bastarache L, Berghout J, Gardeux V, Li J, Lee Y, Pesce L, Yang X, Ramos KS, Foster I, Denny JC, Moore JH, Lussier YA. Integrative genomics analyses unveil downstream biological effectors of disease-specific polymorphisms buried in intergenic regions. Npj Genomic Medicine. 1. PMID 27482468 DOI: 10.1038/Npjgenmed.2016.6 |
0.345 |
|
| 2016 |
Burnicka-Turek O, Steimle JD, Huang W, Felker L, Kamp A, Kweon J, Peterson M, Reeves RH, Maslen CL, Gruber PJ, Yang XH, Shendure J, Moskowitz IP. Cilia Gene Mutations Cause Atrioventricular Septal Defects by Multiple Mechanisms. Human Molecular Genetics. PMID 27340223 DOI: 10.1093/Hmg/Ddw155 |
0.377 |
|
| 2016 |
Priest JR, Osoegawa K, Mohammed N, Nanda V, Kundu R, Schultz K, Lammer EJ, Girirajan S, Scheetz T, Waggott D, Haddad F, Reddy S, Bernstein D, Burns T, Steimle JD, ... Yang XH, et al. De Novo and Rare Variants at Multiple Loci Support the Oligogenic Origins of Atrioventricular Septal Heart Defects. Plos Genetics. 12: e1005963. PMID 27058611 DOI: 10.1371/Journal.Pgen.1005963 |
0.379 |
|
| 2016 |
Waldron L, Steimle JD, Greco TM, Gomez NC, Dorr KM, Kweon J, Temple B, Yang XH, Wilczewski CM, Davis IJ, Cristea IM, Moskowitz IP, Conlon FL. The Cardiac TBX5 Interactome Reveals a Chromatin Remodeling Network Essential for Cardiac Septation. Developmental Cell. 36: 262-75. PMID 26859351 DOI: 10.1016/J.Devcel.2016.01.009 |
0.359 |
|
| 2015 |
Yang XH, Wang B, Cunningham JM. Identification of epigenetic modifications that contribute to pathogenesis in therapy-related AML: Effective integration of genome-wide histone modification with transcriptional profiles. Bmc Medical Genomics. 8: S6. PMID 26043758 DOI: 10.1186/1755-8794-8-S2-S6 |
0.332 |
|
| 2015 |
Yang XH, Li M, Wang B, Zhu W, Desgardin A, Onel K, de Jong J, Chen J, Chen L, Cunningham JM. Systematic computation with functional gene-sets among leukemic and hematopoietic stem cells reveals a favorable prognostic signature for acute myeloid leukemia. Bmc Bioinformatics. 16: 97. PMID 25887548 DOI: 10.1186/S12859-015-0510-7 |
0.423 |
|
| 2014 |
Hoffmann AD, Yang XH, Burnicka-Turek O, Bosman JD, Ren X, Steimle JD, Vokes SA, McMahon AP, Kalinichenko VV, Moskowitz IP. Foxf genes integrate tbx5 and hedgehog pathways in the second heart field for cardiac septation. Plos Genetics. 10: e1004604. PMID 25356765 DOI: 10.1371/Journal.Pgen.1004604 |
0.43 |
|
| 2014 |
Yang X, Huang Y, Lee Y, Gardeux V, Achour I, Regan K, Rebman E, Li H, Lussier YA. In Silico cancer cell versus stroma cellularity index computed from species-specific human and mouse transcriptome of xenograft models: towards accurate stroma targeting therapy assessment. Bmc Medical Genomics. 7: S2. PMID 25079962 DOI: 10.1186/1755-8794-7-S1-S2 |
0.346 |
|
| 2014 |
Yang X, Ai X, Cunningham JM. Computational prognostic indicators for breast cancer. Cancer Management and Research. 6: 301-12. PMID 25050076 DOI: 10.2147/Cmar.S46483 |
0.301 |
|
| 2014 |
van den Boogaard M, Smemo S, Burnicka-Turek O, Arnolds DE, van de Werken HJ, Klous P, McKean D, Muehlschlegel JD, Moosmann J, Toka O, Yang XH, Koopmann TT, Adriaens ME, Bezzina CR, de Laat W, et al. A common genetic variant within SCN10A modulates cardiac SCN5A expression. The Journal of Clinical Investigation. 124: 1844-52. PMID 24642470 DOI: 10.1172/Jci73140 |
0.352 |
|
| 2013 |
Chen JL, Hsu A, Yang X, Li J, Lee Y, Parinandi G, Li H, Lussier YA. Curation-free biomodules mechanisms in prostate cancer predict recurrent disease. Bmc Medical Genomics. 6: S4. PMID 23819917 DOI: 10.1186/1755-8794-6-S2-S4 |
0.413 |
|
| 2013 |
Yang X, Vasudevan P, Parekh V, Penev A, Cunningham JM. Bridging cancer biology with the clinic: relative expression of a GRHL2-mediated gene-set pair predicts breast cancer metastasis. Plos One. 8. PMID 23441166 DOI: 10.1371/Journal.Pone.0056195 |
0.446 |
|
| 2013 |
Li Z, Herold T, He C, Valk PJ, Chen P, Jurinovic V, Mansmann U, Radmacher MD, Maharry KS, Sun M, Yang X, Huang H, Jiang X, Sauerland MC, Büchner T, et al. Identification of a 24-gene prognostic signature that improves the European LeukemiaNet risk classification of acute myeloid leukemia: an international collaborative study. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 31: 1172-81. PMID 23382473 DOI: 10.1200/Jco.2012.44.3184 |
0.37 |
|
| 2012 |
Yang X, Li H, Regan K, Li J, Huang Y, Lussier YA. Towards mechanism classifiers: expression-anchored Gene Ontology signature predicts clinical outcome in lung adenocarcinoma patients. Amia ... Annual Symposium Proceedings. Amia Symposium. 2012: 1040-9. PMID 23304380 |
0.342 |
|
| 2012 |
Yang X, Regan K, Huang Y, Zhang Q, Li J, Seiwert TY, Cohen EE, Xing HR, Lussier YA. Single sample expression-anchored mechanisms predict survival in head and neck cancer. Plos Computational Biology. 8: e1002350. PMID 22291585 DOI: 10.1371/Journal.Pcbi.1002350 |
0.431 |
|
| 2012 |
Li Z, Huang H, Li Y, Jiang X, Chen P, Arnovitz S, Radmacher MD, Maharry K, Elkahloun A, Yang X, He C, He M, Zhang Z, Dohner K, Neilly MB, et al. Up-regulation of a HOXA-PBX3 homeobox-gene signature following down-regulation of miR-181 is associated with adverse prognosis in patients with cytogenetically abnormal AML. Blood. 119: 2314-24. PMID 22251480 DOI: 10.1182/Blood-2011-10-386235 |
0.306 |
|
| 2012 |
Xing RH, Lussier YA, Salama JK, Khodarev NN, Huang Y, Zhang Q, Khan SA, Yang X, Hasselle MD, Darga TE, Malik R, Fan H, Perakis S, Filippo M, Corbin K, et al. Abstract 3405: MicroRNA expression characterizes oligometastasis(es) Cancer Research. 72: 3405-3405. DOI: 10.1158/1538-7445.Am2012-3405 |
0.351 |
|
| 2012 |
Zhang Q, Yang X, Shen J, Salama JK, Khodarev N, Hasselle MD, Huang Y, Fan H, Khan SA, Darga TE, Hoffma RM, Chmura S, Lussier YA, Weichselbaum RR, Xing RH. Abstract 1369: Mouse models of clinical oligo- and poly-metastatic progression Cancer Research. 72: 1369-1369. DOI: 10.1158/1538-7445.Am2012-1369 |
0.355 |
|
| 2011 |
Yang X, Li J, Lee Y, Lussier YA. GO-Module: functional synthesis and improved interpretation of Gene Ontology patterns. Bioinformatics (Oxford, England). 27: 1444-6. PMID 21421553 DOI: 10.1093/Bioinformatics/Btr142 |
0.3 |
|
| 2010 |
Yang X, Lee Y, Huang Y, Chen JL, Xing RH, Lussier YA. Stromal microenvironment processes unveiled by biological component analysis of gene expression in xenograft tumor models. Bmc Bioinformatics. 11: S11. PMID 21044358 DOI: 10.1186/1471-2105-11-S9-S11 |
0.357 |
|
| 2010 |
Lee Y, Yang X, Huang Y, Fan H, Zhang Q, Wu Y, Li J, Hasina R, Cheng C, Lingen MW, Gerstein MB, Weichselbaum RR, Xing HR, Lussier YA. Network modeling identifies molecular functions targeted by miR-204 to suppress head and neck tumor metastasis. Plos Computational Biology. 6: e1000730. PMID 20369013 DOI: 10.1371/Journal.Pcbi.1000730 |
0.407 |
|
| 2009 |
Yang X, Sun X. Meta-analysis of cancer gene-profiling data. Methods of Molecular Biology. 576: 409-426. PMID 19882274 DOI: 10.1007/978-1-59745-545-9_21 |
0.423 |
|
| 2009 |
Yang X, Huang Y, Chen JL, Xie J, Sun X, Lussier YA. Mechanism-anchored profiling derived from epigenetic networks predicts outcome in acute lymphoblastic leukemia. Bmc Bioinformatics. 10: S6. PMID 19761576 DOI: 10.1186/1471-2105-10-S9-S6 |
0.407 |
|
| 2008 |
Yang X, Sun X, Xie J, Lu Z. Comparability of gene expression in human blood, immune and carcinoma cells Applied Mathematics and Computation. 205: 178-184. DOI: 10.1016/J.Amc.2008.05.023 |
0.345 |
|
| 2007 |
Yang X, Sun X. Meta-analysis of several gene lists for distinct types of cancer: a simple way to reveal common prognostic markers. Bmc Bioinformatics. 8: 118. PMID 17411443 DOI: 10.1186/1471-2105-8-118 |
0.424 |
|
| 2006 |
Yang X, Bentink S, Scheid S, Spang R. Similarities of ordered gene lists. Journal of Bioinformatics and Computational Biology. 4: 693-708. PMID 16960970 DOI: 10.1142/S0219720006002120 |
0.432 |
|
| 2006 |
Lottaz C, Yang X, Scheid S, Spang R. OrderedList--a bioconductor package for detecting similarity in ordered gene lists. Bioinformatics (Oxford, England). 22: 2315-6. PMID 16844712 DOI: 10.1093/Bioinformatics/Btl385 |
0.384 |
|
| 2005 |
Yang X, Bentink S, Spang R. Detecting common gene expression patterns in multiple cancer outcome entities. Biomedical Microdevices. 7: 247-51. PMID 16133813 DOI: 10.1007/S10544-005-3032-7 |
0.372 |
|
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