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Katarzyna P. Adamala - Publications

Affiliations: 
Genetics Cell Biology and Development University of Minnesota, Twin Cities, Minneapolis, MN 
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51 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Heili J, Adamala K, Engelhart A. Activation of caged functional RNAs by an oxidative transformation. Chembiochem : a European Journal of Chemical Biology. e202401056. PMID 39740778 DOI: 10.1002/cbic.202401056  0.789
2024 Adamala KP, Agashe D, Belkaid Y, Bittencourt DMC, Cai Y, Chang MW, Chen IA, Church GM, Cooper VS, Davis MM, Devaraj NK, Endy D, Esvelt KM, Glass JI, Hand TW, et al. Confronting risks of mirror life. Science (New York, N.Y.). eads9158. PMID 39666824 DOI: 10.1126/science.ads9158  0.646
2024 Alejo JL, Girodat D, Hammerling MJ, Willi JA, Jewett MC, Engelhart AE, Adamala KP. Alternate conformational trajectories in ribosome translocation. Plos Computational Biology. 20: e1012319. PMID 39141679 DOI: 10.1371/journal.pcbi.1012319  0.771
2024 Hoog TG, Pawlak MR, Gaut NJ, Baxter GC, Bethel TA, Adamala KP, Engelhart AE. Emergent ribozyme behaviors in oxychlorine brines indicate a unique niche for molecular evolution on Mars. Nature Communications. 15: 3863. PMID 38769315 DOI: 10.1038/s41467-024-48037-2  0.773
2024 Gehlbach EM, Robinson AO, Engelhart AE, Adamala KP. Sequential gentle hydration increases encapsulation in model protocells. Discover Life. 54: 2. PMID 38765272 DOI: 10.1007/s11084-024-09645-6  0.778
2024 Khan P, Aufdembrink L, Adamala KP, Engelhart A. PACRAT: Pathogen detection with aptamer-detected cascaded recombinase polymerase amplification-in vitro transcription. Rna (New York, N.Y.). PMID 38637016 DOI: 10.1261/rna.079891.123  0.766
2024 Heili JM, Stokes K, Gaut NJ, Deich C, Sharon J, Hoog T, Gomez-Garcia J, Cash B, Pawlak MR, Engelhart AE, Adamala KP. Controlled exchange of protein and nucleic acid signals from and between synthetic minimal cells. Cell Systems. 15: 49-62.e4. PMID 38237551 DOI: 10.1016/j.cels.2023.12.008  0.801
2024 Robinson AO, Lee J, Cameron A, Keating CD, Adamala KP. Cell-Free Expressed Membraneless Organelles Inhibit Translation in Synthetic Cells. Acs Biomaterials Science & Engineering. PMID 38226971 DOI: 10.1021/acsbiomaterials.3c01052  0.329
2023 Gehlbach EM, Robinson AO, Engelhart AE, Adamala KP. Sequential gentle hydration increases encapsulation in model protocells. Biorxiv : the Preprint Server For Biology. PMID 37873423 DOI: 10.1101/2023.10.15.562404  0.778
2023 Sato W, Rasmussen M, Gaut N, Devarajan M, Stokes K, Deich C, Engelhart AE, Adamala KP. A gene expression control technology for cell-free systems and synthetic cells via targeted gene silencing and transfection. Biotechnology and Bioengineering. PMID 37159417 DOI: 10.1002/bit.28422  0.779
2023 Sharon JA, Dasrath C, Fujiwara A, Snyder A, Blank M, O'Brien S, Aufdembrink LM, Engelhart AE, Adamala KP. Trumpet is an operating system for simple and robust cell-free biocomputing. Nature Communications. 14: 2257. PMID 37080970 DOI: 10.1038/s41467-023-37752-x  0.792
2023 Robinson AO, Lee J, Cameron A, Keating CD, Adamala KP. Cell-free expressed membraneless organelles sequester RNA in synthetic cells. Biorxiv : the Preprint Server For Biology. PMID 37066403 DOI: 10.1101/2023.04.03.535479  0.354
2023 Deich C, Gaut NJ, Sato W, Engelhart AE, Adamala KP. New Fluorescent Proteins for Cell-Free Bioengineering. Acs Synthetic Biology. PMID 37018763 DOI: 10.1021/acssynbio.3c00057  0.778
2023 Cash B, Gaut NJ, Deich C, Johnson LL, Engelhart AE, Adamala KP. Parasites, Infections, and Inoculation in Synthetic Minimal Cells. Acs Omega. 8: 7045-7056. PMID 36844541 DOI: 10.1021/acsomega.2c07911  0.77
2023 Deich C, Cash B, Sato W, Sharon J, Aufdembrink L, Gaut NJ, Heili J, Stokes K, Engelhart AE, Adamala KP. T7Max transcription system. Journal of Biological Engineering. 17: 4. PMID 36691081 DOI: 10.1186/s13036-023-00323-1  0.786
2022 Nagappa LK, Sato W, Alam F, Chengan K, Smales CM, Von Der Haar T, Polizzi KM, Adamala KP, Moore SJ. A ubiquitous amino acid source for prokaryotic and eukaryotic cell-free transcription-translation systems. Frontiers in Bioengineering and Biotechnology. 10: 992708. PMID 36185432 DOI: 10.3389/fbioe.2022.992708  0.695
2022 Sato W, Rasmussen M, Deich C, Engelhart AE, Adamala KP. Expanding luciferase reporter systems for cell-free protein expression. Scientific Reports. 12: 11489. PMID 35798760 DOI: 10.1038/s41598-022-15624-6  0.798
2022 Sakai A, Deich CR, Nelissen FHT, Jonker AJ, Bittencourt DMC, Kempes CP, Wise KS, Heus HA, Huck WTS, Adamala KP, Glass JI. Traditional protocols and optimization methods lead to absent expression in a mycoplasma cell-free gene expression platform. Synthetic Biology (Oxford, England). 7: ysac008. PMID 35774105 DOI: 10.1093/synbio/ysac008  0.344
2022 Sato W, Sharon J, Deich C, Gaut N, Cash B, Engelhart AE, Adamala KP. Akaby-Cell-free protein expression system for linear templates. Plos One. 17: e0266272. PMID 35390057 DOI: 10.1371/journal.pone.0266272  0.767
2022 Hoog TG, Pawlak MR, Aufdembrink LM, Bachan BR, Galles MB, Bense NB, Adamala KP, Engelhart AE. Switchable DNA-Based Peroxidases Controlled by a Chaotropic Ion. Chembiochem : a European Journal of Chemical Biology. e202200090. PMID 35245408 DOI: 10.1002/cbic.202200090  0.759
2022 Mackelprang R, Adamala KP, Aurand ER, Diggans JC, Ellington AD, Evans SW, Fortman JLC, Hillson NJ, Hinman AW, Isaacs FJ, Medford JI, Mamaghani S, Moon TS, Palmer MJ, Peccoud J, et al. Making Security Viral: Shifting Engineering Biology Culture and Publishing. Acs Synthetic Biology. 11: 522-527. PMID 35176864 DOI: 10.1021/acssynbio.1c00324  0.39
2022 Gaut NJ, Gomez-Garcia J, Heili JM, Cash B, Han Q, Engelhart AE, Adamala KP. Programmable Fusion and Differentiation of Synthetic Minimal Cells. Acs Synthetic Biology. PMID 35089706 DOI: 10.1021/acssynbio.1c00519  0.786
2022 Venero OM, Sato W, Heili JM, Deich C, Adamala KP. Liposome Preparation by 3D-Printed Microcapillary-Based Apparatus. Methods in Molecular Biology (Clifton, N.J.). 2433: 227-235. PMID 34985748 DOI: 10.1007/978-1-0716-1998-8_14  0.766
2021 Sato W, Zajkowski T, Moser F, Adamala KP. Synthetic cells in biomedical applications. Wiley Interdisciplinary Reviews. Nanomedicine and Nanobiotechnology. e1761. PMID 34725945 DOI: 10.1002/wnan.1761  0.694
2021 Robinson AO, Venero OM, Adamala KP. Toward synthetic life: Biomimetic synthetic cell communication. Current Opinion in Chemical Biology. 64: 165-173. PMID 34597982 DOI: 10.1016/j.cbpa.2021.08.008  0.776
2021 Gaut NJ, Adamala KP. Reconstituting Natural Cell Elements in Synthetic Cells. Advanced Biology. 5: e2000188. PMID 33729692 DOI: 10.1002/adbi.202000188  0.782
2020 Linghu C, Johnson SL, Valdes PA, Shemesh OA, Park WM, Park D, Piatkevich KD, Wassie AT, Liu Y, An B, Barnes SA, Celiker OT, Yao CC, Yu CJ, Wang R, ... Adamala KP, et al. Spatial Multiplexing of Fluorescent Reporters for Imaging Signaling Network Dynamics. Cell. PMID 33232692 DOI: 10.1016/j.cell.2020.10.035  0.752
2020 Hoog TG, Aufdembrink LM, Gaut NJ, Sung RJ, Adamala KP, Engelhart AE. Rapid deployment of smartphone-based augmented reality tools for field and online education in structural biology. Biochemistry and Molecular Biology Education : a Bimonthly Publication of the International Union of Biochemistry and Molecular Biology. PMID 32604463 DOI: 10.1002/Bmb.21396  0.742
2020 Aufdembrink LM, Khan P, Gaut NJ, Adamala KP, Engelhart AE. Highly specific, multiplexed isothermal pathogen detection with fluorescent aptamer readout. Rna (New York, N.Y.). PMID 32482894 DOI: 10.1261/Rna.075192.120  0.782
2020 Gaut NJ, Adamala KP. Toward artificial photosynthesis. Science (New York, N.Y.). 368: 587-588. PMID 32381709 DOI: 10.1126/Science.Abc1226  0.727
2020 Perez R, Luccioni M, Kamakaka R, Clamons S, Gaut N, Stirling F, Adamala KP, Silver PA, Endy D. Enabling community-based metrology for wood-degrading fungi. Fungal Biology and Biotechnology. 7: 2. PMID 32206323 DOI: 10.1186/s40694-020-00092-2  0.754
2019 Alejo JL, Adamala KP. Connectome of synthetic cells: Comment on "What would a synthetic connectome look like?" by Ithai Rabinowitch. Physics of Life Reviews. PMID 31740262 DOI: 10.1016/J.Plrev.2019.11.003  0.385
2018 Jin L, Engelhart AE, Zhang W, Adamala KP, Szostak JW. Catalysis of Template-directed Nonenzymatic RNA Copying by Iron (II). Journal of the American Chemical Society. PMID 30335371 DOI: 10.1021/Jacs.8B09617  0.784
2018 Jin L, Engelhart AE, Adamala KP, Szostak JW. Preparation, Purification, and Use of Fatty Acid-containing Liposomes. Journal of Visualized Experiments : Jove. PMID 29553563 DOI: 10.3791/57324  0.763
2018 Heili JM, Gomez-Garcia J, Gaut NJ, Cash BW, Aufdembrink LM, Heffron BA, Shirley JD, Carlson EE, Adamala KP, Engelhart AE. Real-Time Visualization of in Vitro Transcription of a Fluorescent RNA Aptamer: An Experiment for the Upper-Division Undergraduate or First-Year Graduate Laboratory Journal of Chemical Education. 95: 1867-1871. DOI: 10.1021/Acs.Jchemed.7B00735  0.771
2017 Jia TZ, Fahrenbach AC, Kamat NP, Adamala KP, Szostak JW. Retraction: Oligoarginine peptides slow strand annealing and assist non-enzymatic RNA replication. Nature Chemistry. 9: 1286. PMID 29168488 DOI: 10.1038/Nchem.2885  0.76
2017 Adamala KP, Martin-Alarcon DA, Guthrie-Honea KR, Boyden ES. Engineering genetic circuit interactions within and between synthetic minimal cells. Nature Chemistry. 9: 431-439. PMID 28430194 DOI: 10.1038/Nchem.2644  0.542
2016 Jia TZ, Fahrenbach AC, Kamat NP, Adamala KP, Szostak JW. Oligoarginine peptides slow strand annealing and assist non-enzymatic RNA replication. Nature Chemistry. 8: 915-21. PMID 27657866 DOI: 10.1038/Nchem.2551  0.777
2016 Adamala KP, Martin-Alarcon DA, Boyden ES. Programmable RNA-binding protein composed of repeats of a single modular unit. Proceedings of the National Academy of Sciences of the United States of America. PMID 27118836 DOI: 10.1073/Pnas.1519368113  0.589
2016 Engelhart AE, Adamala KP, Szostak JW. A simple physical mechanism enables homeostasis in primitive cells. Nature Chemistry. 8: 448-53. PMID 27102678 DOI: 10.1038/Nchem.2475  0.789
2016 Adamala KP, Engelhart AE, Szostak JW. Collaboration between primitive cell membranes and soluble catalysts. Nature Communications. 7: 11041. PMID 26996603 DOI: 10.1038/Ncomms11041  0.78
2015 Adamala K, Engelhart AE, Kamat NP, Jin L, Szostak JW. Construction of a liposome dialyzer for the preparation of high-value, small-volume liposome formulations. Nature Protocols. 10: 927-38. PMID 26020615 DOI: 10.1038/Nprot.2015.054  0.776
2015 Adamala K, Engelhart AE, Szostak JW. Generation of functional RNAs from inactive oligonucleotide complexes by non-enzymatic primer extension. Journal of the American Chemical Society. 137: 483-9. PMID 25521912 DOI: 10.1021/Ja511564D  0.79
2015 Adamala K, Engelhart AE, Szostak JW. Generation of functional RNAs from inactive oligonucleotide complexes by non-enzymatic primer extension Journal of the American Chemical Society. 137: 483-489. DOI: 10.1021/ja511564d  0.782
2014 Adamala K, Anella F, Wieczorek R, Stano P, Chiarabelli C, Luisi PL. Open questions in origin of life: experimental studies on the origin of nucleic acids and proteins with specific and functional sequences by a chemical synthetic biology approach. Computational and Structural Biotechnology Journal. 9: e201402004. PMID 24757502 DOI: 10.5936/Csbj.201402004  0.542
2013 Adamala K, Szostak JW. Nonenzymatic template-directed RNA synthesis inside model protocells Science. 342: 1098-1100. PMID 24288333 DOI: 10.1126/Science.1241888  0.556
2013 Adamala K, Szostak JW. Competition between model protocells driven by an encapsulated catalyst Nature Chemistry. 5: 495-501. PMID 23695631 DOI: 10.1038/Nchem.1650  0.523
2013 Adamala K, Szostak JW. Erratum: Competition between model protocells driven by an encapsulated catalyst Nature Chemistry. 5: 634-634. DOI: 10.1038/Nchem.1700  0.46
2012 Zhu TF, Adamala K, Zhang N, Szostak JW. Photochemically driven redox chemistry induces protocell membrane pearling and division Proceedings of the National Academy of Sciences of the United States of America. 109: 9828-9832. PMID 22665773 DOI: 10.1073/Pnas.1203212109  0.539
2011 Adamala K, Luisi PL. Experimental systems to explore life origin: perspectives for understanding primitive mechanisms of cell division. Results and Problems in Cell Differentiation. 53: 1-9. PMID 21630138 DOI: 10.1007/978-3-642-19065-0_1  0.573
2009 Gorlero M, Wieczorek R, Adamala K, Giorgi A, Schininà ME, Stano P, Luisi PL. Ser-His catalyses the formation of peptides and PNAs. Febs Letters. 583: 153-6. PMID 19071124 DOI: 10.1016/J.Febslet.2008.11.052  0.475
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