| Year |
Citation |
Score |
| 2022 |
Fernandez-Rozadilla C, Timofeeva M, Chen Z, Law P, Thomas M, Schmit S, Díez-Obrero V, Hsu L, Fernandez-Tajes J, Palles C, Sherwood K, Briggs S, Svinti V, Donnelly K, Farrington S, ... ... Scacheri P, et al. Deciphering colorectal cancer genetics through multi-omic analysis of 100,204 cases and 154,587 controls of European and east Asian ancestries. Nature Genetics. PMID 36539618 DOI: 10.1038/s41588-022-01222-9 |
0.309 |
|
| 2022 |
Corradin O, Sallari R, Hoang AT, Kassim BS, Ben Hutta G, Cuoto L, Quach BC, Lovrenert K, Hays C, Gryder BE, Iskhakova M, Cates H, Song Y, Bartels CF, Hancock DB, ... ... Scacheri PC, et al. Convergence of case-specific epigenetic alterations identify a confluence of genetic vulnerabilities tied to opioid overdose. Molecular Psychiatry. PMID 35301427 DOI: 10.1038/s41380-022-01477-y |
0.71 |
|
| 2020 |
Factor DC, Barbeau AM, Allan KC, Hu LR, Madhavan M, Hoang AT, Hazel KEA, Hall PA, Nisraiyya S, Najm FJ, Miller TE, Nevin ZS, Karl RT, Lima BR, Song Y, ... ... Scacheri PC, et al. Cell Type-Specific Intralocus Interactions Reveal Oligodendrocyte Mechanisms in MS. Cell. PMID 32246942 DOI: 10.1016/J.Cell.2020.03.002 |
0.721 |
|
| 2019 |
Shang S, Yang J, Jazaeri AA, Duval AJ, Tufan T, Lopes Fischer N, Benamar M, Guessous F, Lee I, Campbell RM, Ebert PJ, Abbas T, Landen CN, DiFeo A, Scacheri PC, et al. Chemotherapy-induced distal enhancers drive transcriptional program to maintain the chemoresistant state in ovarian cancer. Cancer Research. PMID 31358529 DOI: 10.1158/0008-5472.Can-19-0215 |
0.323 |
|
| 2019 |
Mack SC, Singh I, Wang X, Hirsch R, Wu Q, Villagomez R, Bernatchez JA, Zhu Z, Gimple RC, Kim LJY, Morton A, Lai S, Qiu Z, Prager BC, Bertrand KC, ... ... Scacheri PC, et al. Chromatin landscapes reveal developmentally encoded transcriptional states that define human glioblastoma. The Journal of Experimental Medicine. PMID 30948495 DOI: 10.1084/jem.20190196 |
0.379 |
|
| 2019 |
Bien SA, Su YR, Conti DV, Harrison TA, Qu C, Guo X, Lu Y, Albanes D, Auer PL, Banbury BL, Berndt SI, Bézieau S, Brenner H, Buchanan DD, Caan BJ, ... ... Scacheri PC, et al. Genetic variant predictors of gene expression provide new insight into risk of colorectal cancer. Human Genetics. PMID 30820706 DOI: 10.1007/S00439-019-01989-8 |
0.36 |
|
| 2019 |
Karnuta JM, Scacheri PC. Enhancers: bridging the gap between gene control and human disease. Human Molecular Genetics. 27: R219-R227. PMID 29726898 DOI: 10.1093/hmg/ddy167 |
0.343 |
|
| 2018 |
Patten DK, Corleone G, Győrffy B, Perone Y, Slaven N, Barozzi I, Erdős E, Saiakhova A, Goddard K, Vingiani A, Shousha S, Pongor LS, Hadjiminas DJ, Schiavon G, Barry P, ... ... Scacheri P, et al. Enhancer mapping uncovers phenotypic heterogeneity and evolution in patients with luminal breast cancer. Nature Medicine. PMID 30038216 DOI: 10.1038/S41591-018-0091-X |
0.315 |
|
| 2018 |
Bailey SD, Zhang X, Desai K, Aid M, Corradin O, Cowper-Sal Lari R, Akhtar-Zaidi B, Scacheri PC, Haibe-Kains B, Lupien M. Publisher Correction: ZNF143 provides sequence specificity to secure chromatin interactions at gene promoters. Nature Communications. 9: 16194. PMID 29633758 DOI: 10.1038/Ncomms16194 |
0.723 |
|
| 2018 |
Morrow JJ, Bayles I, Funnell APW, Miller TE, Saiakhova A, Lizardo MM, Bartels CF, Kapteijn MY, Hung S, Mendoza A, Dhillon G, Chee DR, Myers JT, Allen F, Gambarotti M, ... ... Scacheri PC, et al. Positively selected enhancer elements endow osteosarcoma cells with metastatic competence. Nature Medicine. PMID 29334376 DOI: 10.1038/Nm.4475 |
0.336 |
|
| 2017 |
Mack SC, Pajtler KW, Chavez L, Okonechnikov K, Bertrand KC, Wang X, Erkek S, Federation A, Song A, Lee C, Wang X, McDonald L, Morrow JJ, Saiakhova A, Sin-Chan P, ... ... Scacheri PC, et al. Therapeutic targeting of ependymoma as informed by oncogenic enhancer profiling. Nature. PMID 29258295 DOI: 10.1038/Nature25169 |
0.336 |
|
| 2017 |
Cohen AJ, Saiakhova A, Corradin O, Luppino JM, Lovrenert K, Bartels CF, Morrow JJ, Mack SC, Dhillon G, Beard L, Myeroff L, Kalady MF, Willis J, Bradner JE, Keri RA, ... ... Scacheri PC, et al. Hotspots of aberrant enhancer activity punctuate the colorectal cancer epigenome. Nature Communications. 8: 14400. PMID 28169291 DOI: 10.1038/Ncomms14400 |
0.733 |
|
| 2016 |
Corradin O, Cohen AJ, Luppino JM, Bayles IM, Schumacher FR, Scacheri PC. Modeling disease risk through analysis of physical interactions between genetic variants within chromatin regulatory circuitry. Nature Genetics. PMID 27643537 DOI: 10.1038/ng.3674 |
0.745 |
|
| 2016 |
Budnick I, Hamburg-Shields E, Chen D, Torre E, Jarrell A, Akhtar-Zaidi B, Cordovan O, Spitale RC, Scacheri P, Atit RP. Defining the identity of mouse embryonic dermal fibroblasts. Genesis (New York, N.Y. : 2000). PMID 27265328 DOI: 10.1002/dvg.22952 |
0.307 |
|
| 2016 |
Mack SC, Rich JN, Scacheri PC. "PEAR-ing" Genomic and Epigenomic Analyses for Cancer Gene Discovery. Cancer Discovery. 5: 1018-20. PMID 26429935 DOI: 10.1158/2159-8290.CD-15-0985 |
0.315 |
|
| 2015 |
Bailey SD, Zhang X, Desai K, Aid M, Corradin O, Cowper-Sal Lari R, Akhtar-Zaidi B, Scacheri PC, Haibe-Kains B, Lupien M. ZNF143 provides sequence specificity to secure chromatin interactions at gene promoters. Nature Communications. 2: 6186. PMID 25645053 DOI: 10.1038/Ncomms7186 |
0.76 |
|
| 2015 |
Vučićević D, Corradin O, Ntini E, Scacheri PC, Ørom UA. Long ncRNA expression associates with tissue-specific enhancers. Cell Cycle (Georgetown, Tex.). 14: 253-60. PMID 25607649 DOI: 10.4161/15384101.2014.977641 |
0.729 |
|
| 2014 |
Corradin O, Scacheri PC. Enhancer variants: evaluating functions in common disease. Genome Medicine. 6: 85. PMID 25473424 DOI: 10.1186/s13073-014-0085-3 |
0.764 |
|
| 2014 |
Factor DC, Corradin O, Zentner GE, Saiakhova A, Song L, Chenoweth JG, McKay RD, Crawford GE, Scacheri PC, Tesar PJ. Epigenomic comparison reveals activation of "seed" enhancers during transition from naive to primed pluripotency. Cell Stem Cell. 14: 854-63. PMID 24905169 DOI: 10.1016/J.Stem.2014.05.005 |
0.749 |
|
| 2014 |
Corradin O, Saiakhova A, Akhtar-Zaidi B, Myeroff L, Willis J, Cowper-Sal lari R, Lupien M, Markowitz S, Scacheri PC. Combinatorial effects of multiple enhancer variants in linkage disequilibrium dictate levels of gene expression to confer susceptibility to common traits. Genome Research. 24: 1-13. PMID 24196873 DOI: 10.1101/Gr.164079.113 |
0.77 |
|
| 2012 |
Zentner GE, Scacheri PC. The chromatin fingerprint of gene enhancer elements. The Journal of Biological Chemistry. 287: 30888-96. PMID 22952241 DOI: 10.1074/jbc.R111.296491 |
0.381 |
|
| 2012 |
Balasubramanian D, Akhtar-Zaidi B, Song L, Bartels CF, Veigl M, Beard L, Myeroff L, Guda K, Lutterbaugh J, Willis J, Crawford GE, Markowitz SD, Scacheri PC. H3K4me3 inversely correlates with DNA methylation at a large class of non-CpG-island-containing start sites. Genome Medicine. 4: 47. PMID 22640407 DOI: 10.1186/Gm346 |
0.327 |
|
| 2012 |
Akhtar-Zaidi B, Cowper-Sal-lari R, Corradin O, Saiakhova A, Bartels CF, Balasubramanian D, Myeroff L, Lutterbaugh J, Jarrar A, Kalady MF, Willis J, Moore JH, Tesar PJ, Laframboise T, Markowitz S, ... ... Scacheri PC, et al. Epigenomic enhancer profiling defines a signature of colon cancer. Science (New York, N.Y.). 336: 736-9. PMID 22499810 DOI: 10.1126/Science.1217277 |
0.748 |
|
| 2011 |
Zentner GE, Tesar PJ, Scacheri PC. Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions. Genome Research. 21: 1273-83. PMID 21632746 DOI: 10.1101/gr.122382.111 |
0.408 |
|
| 2011 |
Zentner GE, Saiakhova A, Manaenkov P, Adams MD, Scacheri PC. Integrative genomic analysis of human ribosomal DNA. Nucleic Acids Research. 39: 4949-60. PMID 21355038 DOI: 10.1093/nar/gkq1326 |
0.326 |
|
| 2010 |
Schnetz MP, Handoko L, Akhtar-Zaidi B, Bartels CF, Pereira CF, Fisher AG, Adams DJ, Flicek P, Crawford GE, Laframboise T, Tesar P, Wei CL, Scacheri PC. CHD7 targets active gene enhancer elements to modulate ES cell-specific gene expression. Plos Genetics. 6: e1001023. PMID 20657823 DOI: 10.1371/Journal.Pgen.1001023 |
0.371 |
|
| 2010 |
Zentner GE, Hurd EA, Schnetz MP, Handoko L, Wang C, Wang Z, Wei C, Tesar PJ, Hatzoglou M, Martin DM, Scacheri PC. CHD7 functions in the nucleolus as a positive regulator of ribosomal RNA biogenesis. Human Molecular Genetics. 19: 3491-501. PMID 20591827 DOI: 10.1093/Hmg/Ddq265 |
0.31 |
|
| 2009 |
Tie F, Banerjee R, Stratton CA, Prasad-Sinha J, Stepanik V, Zlobin A, Diaz MO, Scacheri PC, Harte PJ. CBP-mediated acetylation of histone H3 lysine 27 antagonizes Drosophila Polycomb silencing. Development (Cambridge, England). 136: 3131-41. PMID 19700617 DOI: 10.1242/Dev.037127 |
0.336 |
|
| 2009 |
Schnetz MP, Bartels CF, Shastri K, Balasubramanian D, Zentner GE, Balaji R, Zhang X, Song L, Wang Z, Laframboise T, Crawford GE, Scacheri PC. Genomic distribution of CHD7 on chromatin tracks H3K4 methylation patterns. Genome Research. 19: 590-601. PMID 19251738 DOI: 10.1101/Gr.086983.108 |
0.344 |
|
| 2007 |
Agarwal SK, Impey S, McWeeney S, Scacheri PC, Collins FS, Goodman RH, Spiegel AM, Marx SJ. Distribution of menin-occupied regions in chromatin specifies a broad role of menin in transcriptional regulation. Neoplasia (New York, N.Y.). 9: 101-7. PMID 17356705 DOI: 10.1593/Neo.06706 |
0.404 |
|
| 2006 |
Scacheri PC, Davis S, Odom DT, Crawford GE, Perkins S, Halawi MJ, Agarwal SK, Marx SJ, Spiegel AM, Meltzer PS, Collins FS. Genome-wide analysis of menin binding provides insights into MEN1 tumorigenesis. Plos Genetics. 2: e51. PMID 16604156 DOI: 10.1371/Journal.Pgen.0020051 |
0.33 |
|
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