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Joshua Tzvi Vogelstein - Publications

Affiliations: 
Johns Hopkins University, Baltimore, MD 
Area:
computational, circuit inference, fluorescence imaging
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56 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Pedigo BD, Winding M, Priebe CE, Vogelstein JT. Bisected graph matching improves automated pairing of bilaterally homologous neurons from connectomes. Network Neuroscience (Cambridge, Mass.). 7: 522-538. PMID 37409218 DOI: 10.1162/netn_a_00287  0.604
2023 Pedigo BD, Powell M, Bridgeford EW, Winding M, Priebe CE, Vogelstein JT. Generative network modeling reveals quantitative definitions of bilateral symmetry exhibited by a whole insect brain connectome. Elife. 12. PMID 36976249 DOI: 10.7554/eLife.83739  0.534
2023 Winding M, Pedigo BD, Barnes CL, Patsolic HG, Park Y, Kazimiers T, Fushiki A, Andrade IV, Khandelwal A, Valdes-Aleman J, Li F, Randel N, Barsotti E, Correia A, Fetter RD, ... ... Vogelstein JT, et al. The connectome of an insect brain. Science (New York, N.Y.). 379: eadd9330. PMID 36893230 DOI: 10.1126/science.add9330  0.523
2021 Mehta K, Goldin RF, Marchette D, Vogelstein JT, Priebe CE, Ascoli GA. Neuronal classification from network connectivity via adjacency spectral embedding. Network Neuroscience (Cambridge, Mass.). 5: 689-710. PMID 34746623 DOI: 10.1162/netn_a_00195  0.573
2021 Arroyo J, Athreya A, Cape J, Chen G, Priebe CE, Vogelstein JT. Inference for Multiple Heterogeneous Networks with a Common Invariant Subspace. Journal of Machine Learning Research : Jmlr. 22: 1-49. PMID 34650343  0.615
2021 Bridgeford EW, Wang S, Wang Z, Xu T, Craddock C, Dey J, Kiar G, Gray-Roncal W, Colantuoni C, Douville C, Noble S, Priebe CE, Caffo B, Milham M, Zuo XN, ... ... Vogelstein JT, et al. Eliminating accidental deviations to minimize generalization error and maximize replicability: Applications in connectomics and genomics. Plos Computational Biology. 17: e1009279. PMID 34529652 DOI: 10.1371/journal.pcbi.1009279  0.519
2020 Hong SJ, Xu T, Nikolaidis A, Smallwood J, Margulies DS, Bernhardt B, Vogelstein J, Milham MP. Toward a Connectivity Gradient-based Framework for Reproducible Biomarker Discovery. Neuroimage. 117322. PMID 32882388 DOI: 10.1016/J.Neuroimage.2020.117322  0.366
2020 Schulz MA, Yeo BTT, Vogelstein JT, Mourao-Miranada J, Kather JN, Kording K, Richards B, Bzdok D. Different scaling of linear models and deep learning in UKBiobank brain images versus machine-learning datasets. Nature Communications. 11: 4238. PMID 32843633 DOI: 10.1038/S41467-020-18037-Z  0.3
2020 Wang N, Anderson RJ, Ashbrook DG, Gopalakrishnan V, Park Y, Priebe CE, Qi Y, Laoprasert R, Vogelstein JT, Williams RW, Johnson GA. Variability and Heritability of Mouse Brain Structure: Microscopic MRI Atlases and Connectomes for Diverse Strains. Neuroimage. 117274. PMID 32818613 DOI: 10.1016/J.Neuroimage.2020.117274  0.556
2020 Nenning KH, Xu T, Schwartz E, Arroyo J, Woehrer A, Franco AR, Vogelstein JT, Margulies DS, Liu H, Smallwood J, Milham MP, Langs G. Joint Embedding: A scalable alignment to compare individuals in a connectivity space. Neuroimage. 117232. PMID 32771618 DOI: 10.1016/J.Neuroimage.2020.117232  0.321
2020 Franca G, Rizzo M, Vogelstein JT. Kernel k-Groups via Hartigan's Method. Ieee Transactions On Pattern Analysis and Machine Intelligence. PMID 32750776 DOI: 10.1109/TPAMI.2020.2998120  0.305
2020 Hong SJ, Vogelstein JT, Gozzi A, Bernhardt BC, Yeo BTT, Milham MP, Di Martino A. Toward Neurosubtypes in Autism. Biological Psychiatry. 88: 111-128. PMID 32553193 DOI: 10.1016/j.biopsych.2020.03.022  0.361
2020 Charles AS, Falk B, Turner N, Pereira TD, Tward D, Pedigo BD, Chung J, Burns R, Ghosh SS, Kebschull JM, Silversmith W, Vogelstein JT. Toward Community-Driven Big Open Brain Science: Open Big Data and Tools for Structure, Function, and Genetics. Annual Review of Neuroscience. PMID 32283996 DOI: 10.1146/Annurev-Neuro-100119-110036  0.334
2020 Nikolaidis A, Heinsfeld AS, Xu T, Bellec P, Vogelstein J, Milham M. Bagging improves reproducibility of functional parcellation of the human brain. Neuroimage. 116678. PMID 32119986 DOI: 10.1016/J.Neuroimage.2020.116678  0.334
2019 Wang S, Arroyo J, Vogelstein JT, Priebe CE. Joint Embedding of Graphs. Ieee Transactions On Pattern Analysis and Machine Intelligence. PMID 31675314 DOI: 10.1109/Tpami.2019.2948619  0.64
2019 Vogelstein JT, Bridgeford EW, Pedigo BD, Chung J, Levin K, Mensh B, Priebe CE. Connectal coding: discovering the structures linking cognitive phenotypes to individual histories. Current Opinion in Neurobiology. 55: 199-212. PMID 31102987 DOI: 10.1016/J.Conb.2019.04.005  0.542
2019 Priebe CE, Park Y, Vogelstein JT, Conroy JM, Lyzinski V, Tang M, Athreya A, Cape J, Bridgeford E. On a two-truths phenomenon in spectral graph clustering. Proceedings of the National Academy of Sciences of the United States of America. PMID 30850525 DOI: 10.1073/Pnas.1814462116  0.577
2019 Vogelstein JT, Bridgeford EW, Wang Q, Priebe CE, Maggioni M, Shen C. Discovering and deciphering relationships across disparate data modalities. Elife. 8. PMID 30644820 DOI: 10.7554/Elife.41690  0.597
2019 Lee Y, Shen C, Priebe CE, Vogelstein JT. Network dependence testing via diffusion maps and distance-based correlations Biometrika. 106: 857-873. DOI: 10.1093/Biomet/Asz045  0.59
2019 Shen C, Priebe CE, Vogelstein JT. From Distance Correlation to Multiscale Graph Correlation Journal of the American Statistical Association. 115: 280-291. DOI: 10.1080/01621459.2018.1543125  0.569
2018 Tang R, Ketcha M, Badea A, Calabrese ED, Margulies DS, Vogelstein JT, Priebe CE, Sussman DL. Connectome Smoothing via Low-rank Approximations. Ieee Transactions On Medical Imaging. PMID 30530318 DOI: 10.1109/Tmi.2018.2885968  0.62
2018 Vogelstein JT, Bridgeford EW, Wang Q, Priebe CE, Maggioni M, Shen C. Author response: Discovering and deciphering relationships across disparate data modalities Elife. DOI: 10.7554/Elife.41690.030  0.5
2018 Zheng D, Mhembere D, Vogelstein JT, Priebe CE, Burns R. FlashR Acm Sigplan Notices. 53: 183-194. DOI: 10.1145/3200691.3178501  0.477
2017 Binkiewicz N, Vogelstein JT, Rohe K. Covariate-assisted spectral clustering. Biometrika. 104: 361-377. PMID 29430032 DOI: 10.1093/biomet/asx008  0.386
2017 Chen S, Liu K, Yang Y, Xu Y, Lee S, Lindquist M, Caffo BS, Vogelstein JT. An M-estimator for reduced-rank system identification. Pattern Recognition Letters. 86: 76-81. PMID 29391659 DOI: 10.1016/J.Patrec.2016.12.012  0.348
2017 Hildebrand DGC, Cicconet M, Torres RM, Choi W, Quan TM, Moon J, Wetzel AW, Scott Champion A, Graham BJ, Randlett O, Plummer GS, Portugues R, Bianco IH, Saalfeld S, Baden AD, ... ... Vogelstein JT, et al. Whole-brain serial-section electron microscopy in larval zebrafish. Nature. PMID 28489821 DOI: 10.1038/Nature22356  0.349
2017 Simhal AK, Aguerrebere C, Collman F, Vogelstein JT, Micheva KD, Weinberg RJ, Smith SJ, Sapiro G. Probabilistic fluorescence-based synapse detection. Plos Computational Biology. 13: e1005493. PMID 28414801 DOI: 10.1371/Journal.Pcbi.1005493  0.303
2017 Zheng D, Mhembere D, Lyzinski V, Vogelstein JT, Priebe CE, Burns R. Semi-External Memory Sparse Matrix Multiplication for Billion-Node Graphs Ieee Transactions On Parallel and Distributed Systems. 28: 1470-1483. DOI: 10.1109/Tpds.2016.2618791  0.541
2017 Durante D, Dunson DB, Vogelstein JT. Nonparametric Bayes Modeling of Populations of Networks Journal of the American Statistical Association. 112: 1516-1530. DOI: 10.1080/01621459.2016.1219260  0.339
2017 Shen C, Vogelstein JT, Priebe CE. Manifold matching using shortest-path distance and joint neighborhood selection Pattern Recognition Letters. 92: 41-48. DOI: 10.1016/J.Patrec.2017.04.005  0.616
2016 Vogelstein JT, Mensh B, Häusser M, Spruston N, Evans AC, Kording K, Amunts K, Ebell C, Muller J, Telefont M, Hill S, Koushika SP, Calì C, Valdés-Sosa PA, Littlewood PB, et al. To the Cloud! A Grassroots Proposal to Accelerate Brain Science Discovery Neuron. 92: 622-627. PMID 27810005 DOI: 10.1016/J.Neuron.2016.10.033  0.33
2016 Chen L, Vogelstein JT, Lyzinski V, Priebe CE. A joint graph inference case study: the C. elegans chemical and electrical connectomes. Worm. 5: e1142041. PMID 27386164 DOI: 10.1080/21624054.2016.1142041  0.576
2016 Airan RD, Vogelstein JT, Pillai JJ, Caffo B, Pekar JJ, Sair HI. Factors affecting characterization and localization of interindividual differences in functional connectivity using MRI. Human Brain Mapping. PMID 27012314 DOI: 10.1002/Hbm.23150  0.326
2016 Lyzinski V, Fishkind DE, Fiori M, Vogelstein JT, Priebe CE, Sapiro G. Graph Matching: Relax at Your Own Risk. Ieee Transactions On Pattern Analysis and Machine Intelligence. 38: 60-73. PMID 26656578 DOI: 10.1109/Tpami.2015.2424894  0.61
2016 Kiar G, Roncal WG, Mehmbere D, Bridgeford E, Wang S, Priebe CE, Burns R, Vogelstein JT. GruteDB: an optimized open-source distributed DTI pipeline estimates brain graphs from >5,000 publicly-available scans enabling mega-analysis F1000research. 5. DOI: 10.7490/F1000Research.1113325.1  0.604
2016 Koutra D, Shah N, Vogelstein JT, Gallagher B, Faloutsos C. DELTACON: Principled massive-graph similarity function with attribution Acm Transactions On Knowledge Discovery From Data. 10. DOI: 10.1145/2824443  0.459
2016 Kutten KS, Vogelstein JT, Charon N, Ye L, Deisseroth K, Miller MI. Deformably registering and annotating whole CLARITY brains to an atlas via masked LDDMM Proceedings of Spie. 9896: 989616. DOI: 10.1117/12.2227444  0.346
2015 Chen L, Shen C, Vogelstein J, Priebe CE. Robust Vertex Classification. Ieee Transactions On Pattern Analysis and Machine Intelligence. PMID 26340770 DOI: 10.1109/Tpami.2015.2456913  0.618
2015 Gray Roncal WR, Kleissas DM, Vogelstein JT, Manavalan P, Lillaney K, Pekala M, Burns R, Vogelstein RJ, Priebe CE, Chevillet MA, Hager GD. An automated images-to-graphs framework for high resolution connectomics. Frontiers in Neuroinformatics. 9: 20. PMID 26321942 DOI: 10.3389/Fninf.2015.00020  0.639
2015 Kasthuri N, Hayworth KJ, Berger DR, Schalek RL, Conchello JA, Knowles-Barley S, Lee D, Vázquez-Reina A, Kaynig V, Jones TR, Roberts M, Morgan JL, Tapia JC, Seung HS, Roncal WG, ... Vogelstein JT, et al. Saturated Reconstruction of a Volume of Neocortex. Cell. 162: 648-61. PMID 26232230 DOI: 10.1016/J.Cell.2015.06.054  0.534
2015 Vogelstein JT, Conroy JM, Lyzinski V, Podrazik LJ, Kratzer SG, Harley ET, Fishkind DE, Vogelstein RJ, Priebe CE. Fast approximate quadratic programming for graph matching. Plos One. 10: e0121002. PMID 25886624 DOI: 10.1371/Journal.Pone.0121002  0.627
2015 Priebe CE, Sussman DL, Tang M, Vogelstein JT. Statistical Inference on Errorfully Observed Graphs Journal of Computational and Graphical Statistics. 24: 930-953. DOI: 10.1080/10618600.2014.951049  0.607
2015 Lyzinski V, Sussman DL, Fishkind DE, Pao H, Chen L, Vogelstein JT, Park Y, Priebe CE. Spectral clustering for divide-and-conquer graph matching Parallel Computing. 47: 70-87. DOI: 10.1016/j.parco.2015.03.004  0.543
2015 Kasthuri N, Hayworth KJ, Berger DR, Schalek RL, Conchello JA, Knowles-Barley S, Lee D, Vázquez-Reina A, Kaynig V, Jones TR, Roberts M, Morgan JL, Tapia JC, Seung HS, Roncal WG, ... Vogelstein JT, et al. Saturated Reconstruction of a Volume of Neocortex Cell. 162: 648-661. DOI: 10.1016/j.cell.2015.06.054  0.487
2015 Vogelstein JT, Priebe CE. Shuffled Graph Classification: Theory and Connectome Applications Journal of Classification. 32: 3-20. DOI: 10.1007/S00357-015-9170-6  0.636
2014 Vogelstein JT, Park Y, Ohyama T, Kerr RA, Truman JW, Priebe CE, Zlatic M. Discovery of brainwide neural-behavioral maps via multiscale unsupervised structure learning. Science (New York, N.Y.). 344: 386-92. PMID 24674869 DOI: 10.1126/Science.1250298  0.526
2013 Craddock RC, Jbabdi S, Yan CG, Vogelstein JT, Castellanos FX, Di Martino A, Kelly C, Heberlein K, Colcombe S, Milham MP. Imaging human connectomes at the macroscale. Nature Methods. 10: 524-39. PMID 23722212 DOI: 10.1038/Nmeth.2482  0.317
2013 Vogelstein JT, Gray Roncal W, Vogelstein RJ, Priebe CE. Graph classification using signal-subgraphs: applications in statistical connectomics. Ieee Transactions On Pattern Analysis and Machine Intelligence. 35: 1539-51. PMID 23681985 DOI: 10.1109/Tpami.2012.235  0.625
2013 Mhembere D, Gray Roncal W, Sussman D, Priebe CE, Jung R, Ryman S, Vogelstein RJ, Vogelstein JT, Burns R. Computing scalable multivariate glocal invariants of large (brain-) graphs 2013 Ieee Global Conference On Signal and Information Processing, Globalsip 2013 - Proceedings. 297-300. DOI: 10.1109/GlobalSIP.2013.6736874  0.586
2013 Priebe CE, Vogelstein J, Bock D. Optimizing the quantity/quality trade-off in connectome inference Communications in Statistics - Theory and Methods. 42: 3455-3462. DOI: 10.1080/03610926.2011.630768  0.59
2012 Gray WR, Bogovic JA, Vogelstein JT, Landman BA, Prince JL, Vogelstein RJ. Magnetic resonance connectome automated pipeline: an overview. Ieee Pulse. 3: 42-8. PMID 22481745 DOI: 10.1109/Mpul.2011.2181023  0.302
2012 Fishkind DE, Sussman DL, Tang M, Vogelstein JT, Priebe CE. Consistent adjacency-spectral partitioning for the stochastic block model when the model parameters are unknown Siam Journal On Matrix Analysis and Applications. 34: 23-39. DOI: 10.1137/120875600  0.575
2011 Vogelstein JT, Vogelstein RJ, Priebe CE. Are mental properties supervenient on brain properties? Scientific Reports. 1: 100. PMID 22355618 DOI: 10.1038/Srep00100  0.586
2011 Vogelstein JT. Q&A: What is the Open Connectome Project? Neural Systems & Circuits. 1: 16. PMID 22329952 DOI: 10.1186/2042-1001-1-16  0.356
2011 Mishchenko Y, Vogelstein JT, Paninski L. A bayesian approach for inferring neuronal connectivity from calcium fluorescent imaging data Annals of Applied Statistics. 5: 1229-1261. DOI: 10.1214/09-Aoas303  0.361
2010 Paninski L, Ahmadian Y, Ferreira DG, Koyama S, Rahnama Rad K, Vidne M, Vogelstein J, Wu W. A new look at state-space models for neural data. Journal of Computational Neuroscience. 29: 107-26. PMID 19649698 DOI: 10.1007/S10827-009-0179-X  0.309
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