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Robi D. Mitra - Publications

Affiliations: 
Biology & Biomedical Sciences (Computational Biology) Washington University, Saint Louis, St. Louis, MO 
Area:
Molecular Biology, Biochemistry, General
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72/117 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Yen A, Mateusiak C, Sarafinovska S, Gachechiladze MA, Guo J, Chen X, Moudgil A, Cammack AJ, Hoisington-Lopez J, Crosby M, Brent MR, Mitra RD, Dougherty JD. Calling Cards: A Customizable Platform to Longitudinally Record Protein-DNA Interactions Over Time in Cells and Tissues. Current Protocols. 3: e883. PMID 37755132 DOI: 10.1002/cpz1.883  0.309
2023 Yen A, Mateusiak C, Sarafinovska S, Gachechiladze MA, Guo J, Chen X, Moudgil A, Cammack AJ, Hoisington-Lopez J, Crosby M, Brent MR, Mitra RD, Dougherty JD. Calling Cards: a customizable platform to longitudinally record protein-DNA interactions over time in cells and tissues. Biorxiv : the Preprint Server For Biology. PMID 37333130 DOI: 10.1101/2023.06.07.544098  0.321
2022 Lalli M, Yen A, Thopte U, Dong F, Moudgil A, Chen X, Milbrandt J, Dougherty JD, Mitra RD. Measuring transcription factor binding and gene expression using barcoded self-reporting transposon calling cards and transcriptomes. Nar Genomics and Bioinformatics. 4: lqac061. PMID 36062164 DOI: 10.1093/nargab/lqac061  0.32
2020 Moudgil A, Li D, Hsu S, Purushotham D, Wang T, Mitra RD. The qBED track: a novel genome browser visualization for point processes. Bioinformatics (Oxford, England). PMID 32941613 DOI: 10.1093/Bioinformatics/Btaa771  0.365
2020 Lalli MA, Avey D, Dougherty JD, Milbrandt J, Mitra RD. High-throughput single-cell functional elucidation of neurodevelopmental disease-associated genes reveals convergent mechanisms altering neuronal differentiation. Genome Research. PMID 32887689 DOI: 10.1101/Gr.262295.120  0.375
2020 Chen D, Cremona MA, Qi Z, Mitra RD, Chiaromonte F, Makova KD. Human L1 Transposition Dynamics Unraveled with Functional Data Analysis. Molecular Biology and Evolution. PMID 32722770 DOI: 10.1093/Molbev/Msaa194  0.309
2020 Moudgil A, Wilkinson MN, Chen X, He J, Cammack AJ, Vasek MJ, Lagunas T, Qi Z, Lalli MA, Guo C, Morris SA, Dougherty JD, Mitra RD. Self-Reporting Transposons Enable Simultaneous Readout of Gene Expression and Transcription Factor Binding in Single Cells. Cell. PMID 32710817 DOI: 10.1016/J.Cell.2020.06.037  0.428
2020 Cammack AJ, Moudgil A, Chen J, Vasek MJ, Shabsovich M, McCullough K, Yen A, Lagunas T, Maloney SE, He J, Chen X, Hooda M, Wilkinson MN, Miller TM, Mitra RD, et al. A viral toolkit for recording transcription factor-DNA interactions in live mouse tissues. Proceedings of the National Academy of Sciences of the United States of America. PMID 32300008 DOI: 10.1073/Pnas.1918241117  0.44
2020 Liu J, Shively CA, Mitra RD. Quantitative analysis of transcription factor binding and expression using calling cards reporter arrays. Nucleic Acids Research. PMID 32133534 DOI: 10.1093/Nar/Gkaa141  0.364
2020 Kang Y, Patel NR, Shively C, Recio PS, Chen X, Wranik BJ, Kim G, McIsaac RS, Mitra R, Brent MR. Dual threshold optimization and network inference reveal convergent evidence from TF binding locations and TF perturbation responses. Genome Research. PMID 32060051 DOI: 10.1101/Gr.259655.119  0.363
2020 Kfoury-Beaumont N, Qi Z, Wilkinson M, Broestl L, Berrett K, Moudgil A, Sankararaman S, Chen X, Gertz J, Mitra R, Rubin JB. Abstract 3658: Brd4-bound enhancers drive critical sex differences in glioblastoma Cancer Research. 80: 3658-3658. DOI: 10.1158/1538-7445.Am2020-3658  0.315
2019 Shively CA, Liu J, Chen X, Loell K, Mitra RD. Homotypic cooperativity and collective binding are determinants of bHLH specificity and function. Proceedings of the National Academy of Sciences of the United States of America. PMID 31341088 DOI: 10.1073/Pnas.1818015116  0.396
2018 Yen M, Qi Z, Chen X, Cooper JA, Mitra RD, Onken MD. Transposase mapping identifies the genomic targets of BAP1 in uveal melanoma. Bmc Medical Genomics. 11: 97. PMID 30400891 DOI: 10.1186/S12920-018-0424-0  0.42
2018 Avey D, Sankararaman S, Yim AKY, Barve R, Milbrandt J, Mitra RD. Single-Cell RNA-Seq Uncovers a Robust Transcriptional Response to Morphine by Glia. Cell Reports. 24: 3619-3629.e4. PMID 30257220 DOI: 10.1016/J.Celrep.2018.08.080  0.316
2018 Liu C, Xiao F, Hoisington-Lopez J, Lang K, Quenzel P, Duffy B, Mitra RD. Accurate typing of Human Leukocyte Antigen class I genes by Oxford nanopore sequencing. The Journal of Molecular Diagnostics : Jmd. PMID 29625249 DOI: 10.1016/J.Jmoldx.2018.02.006  0.328
2017 Qi Z, Wilkinson MN, Chen X, Sankararaman S, Mayhew D, Mitra RD. An optimized, broadly applicable piggyBac transposon induction system. Nucleic Acids Research. PMID 28082389 DOI: 10.1093/Nar/Gkw1290  0.76
2016 Haller G, Alvarado D, McCall K, Mitra RD, Dobbs MB, Gurnett CA. Massively parallel single-nucleotide mutagenesis using reversibly terminated inosine. Nature Methods. PMID 27694911 DOI: 10.1038/Nmeth.4015  0.35
2016 Styles EB, Founk KJ, Zamparo LA, Sing TL, Altintas D, Ribeyre C, Ribaud V, Rougemont J, Mayhew D, Costanzo M, Usaj M, Verster AJ, Koch EN, Novarina D, Graf M, ... ... Mitra RD, et al. Exploring Quantitative Yeast Phenomics with Single-Cell Analysis of DNA Damage Foci. Cell Systems. PMID 27617677 DOI: 10.1016/J.Cels.2016.08.008  0.758
2016 Yu H, Artomov M, Brähler S, Stander MC, Shamsan G, Sampson MG, White JM, Kretzler M, Miner JH, Jain S, Winkler CA, Mitra RD, Kopp JB, Daly MJ, Shaw AS. A role for genetic susceptibility in sporadic focal segmental glomerulosclerosis. The Journal of Clinical Investigation. PMID 26901816 DOI: 10.1172/Jci82592  0.34
2016 Mayhew D, Mitra RD. Transposon Calling Cards. Cold Spring Harbor Protocols. 2016: pdb.top077776. PMID 26832691 DOI: 10.1101/Pdb.Top077776  0.749
2016 Mayhew D, Mitra RD. Calling Card Analysis in Budding Yeast. Cold Spring Harbor Protocols. 2016: pdb.prot086918. PMID 26832687 DOI: 10.1101/Pdb.Prot086918  0.761
2015 Zhang C, Myers CA, Qi Z, Mitra RD, Corbo JC, Havranek JJ. Redesign of the monomer-monomer interface of Cre recombinase yields an obligate heterotetrameric complex. Nucleic Acids Research. 43: 9076-85. PMID 26365240 DOI: 10.1093/Nar/Gkv901  0.332
2015 Röhrig T, Pihlajoki M, Ziegler R, Cochran RS, Schrade A, Schillebeeckx M, Mitra RD, Heikinheimo M, Wilson DB. Toying with fate: Redirecting the differentiation of adrenocortical progenitor cells into gonadal-like tissue. Molecular and Cellular Endocrinology. 408: 165-77. PMID 25498963 DOI: 10.1016/J.Mce.2014.12.003  0.763
2015 Schillebeeckx M, Pihlajoki M, Gretzinger E, Yang W, Thol F, Hiller T, Löbs AK, Röhrig T, Schrade A, Cochran R, Jay PY, Heikinheimo M, Mitra RD, Wilson DB. Novel markers of gonadectomy-induced adrenocortical neoplasia in the mouse and ferret. Molecular and Cellular Endocrinology. 399: 122-30. PMID 25289806 DOI: 10.1016/J.Mce.2014.09.029  0.773
2014 Coghlan MA, Shifren A, Huang HJ, Russell TD, Mitra RD, Zhang Q, Wegner DJ, Cole FS, Hamvas A. Sequencing of idiopathic pulmonary fibrosis-related genes reveals independent single gene associations. Bmj Open Respiratory Research. 1: e000057. PMID 25553246 DOI: 10.1136/Bmjresp-2014-000057  0.318
2014 Brooks MD, Jackson E, Warrington NM, Luo J, Forys JT, Taylor S, Mao DD, Leonard JR, Kim AH, Piwnica-Worms D, Mitra RD, Rubin JB. PDE7B is a novel, prognostically significant mediator of glioblastoma growth whose expression is regulated by endothelial cells. Plos One. 9: e107397. PMID 25203500 DOI: 10.1371/Journal.Pone.0107397  0.63
2014 Vallania FL, Sherman M, Goodwin Z, Mogno I, Cohen BA, Mitra RD. Origin and consequences of the relationship between protein mean and variance. Plos One. 9: e102202. PMID 25062021 DOI: 10.1371/Journal.Pone.0102202  0.322
2014 Bien-Willner GA, Mitra RD. Mutation and expression analysis in medulloblastoma yields prognostic variants and a putative mechanism of disease for i17q tumors. Acta Neuropathologica Communications. 2: 74. PMID 25030029 DOI: 10.1186/S40478-014-0074-1  0.334
2014 Mayhew D, Mitra RD. Transcription factor regulation and chromosome dynamics during pseudohyphal growth. Molecular Biology of the Cell. 25: 2669-76. PMID 25009286 DOI: 10.1091/Mbc.E14-04-0871  0.756
2014 Cottrell CE, Al-Kateb H, Bredemeyer AJ, Duncavage EJ, Spencer DH, Abel HJ, Lockwood CM, Hagemann IS, O'Guin SM, Burcea LC, Sawyer CS, Oschwald DM, Stratman JL, Sher DA, Johnson MR, ... ... Mitra RD, et al. Validation of a next-generation sequencing assay for clinical molecular oncology. The Journal of Molecular Diagnostics : Jmd. 16: 89-105. PMID 24211365 DOI: 10.1016/J.Jmoldx.2013.10.002  0.372
2013 Higdon CW, Mitra RD, Johnson SL. Gene expression analysis of zebrafish melanocytes, iridophores, and retinal pigmented epithelium reveals indicators of biological function and developmental origin. Plos One. 8: e67801. PMID 23874447 DOI: 10.1371/Journal.Pone.0067801  0.362
2013 Liu C, Yang X, Duffy B, Mohanakumar T, Mitra RD, Zody MC, Pfeifer JD. ATHLATES: accurate typing of human leukocyte antigen through exome sequencing. Nucleic Acids Research. 41: e142. PMID 23748956 DOI: 10.1093/Nar/Gkt481  0.308
2013 Schillebeeckx M, Schrade A, Löbs AK, Pihlajoki M, Wilson DB, Mitra RD. Laser capture microdissection-reduced representation bisulfite sequencing (LCM-RRBS) maps changes in DNA methylation associated with gonadectomy-induced adrenocortical neoplasia in the mouse. Nucleic Acids Research. 41: e116. PMID 23589626 DOI: 10.1093/Nar/Gkt230  0.768
2013 Mitra R, Li X, Kapusta A, Mayhew D, Mitra RD, Feschotte C, Craig NL. Functional characterization of piggyBat from the bat Myotis lucifugus unveils an active mammalian DNA transposon. Proceedings of the National Academy of Sciences of the United States of America. 110: 234-9. PMID 23248290 DOI: 10.1073/Pnas.1217548110  0.747
2013 Brooks MD, Jackson E, Piwnica-Worms D, Mitra RD, Rubin JB. Abstract 366: Downregulation of THBS1 is a critical step in glioblastoma angiogenesis. Cancer Research. 73: 366-366. DOI: 10.1158/1538-7445.Am2013-366  0.62
2013 Liu C, Yang X, Duffy B, Mohanakumar T, Mitra RD, Zody MC, Pfeifer JD. 11-OR Human Immunology. 74: 11. DOI: 10.1016/J.Humimm.2013.08.022  0.333
2012 Ryan O, Shapiro RS, Kurat CF, Mayhew D, Baryshnikova A, Chin B, Lin ZY, Cox MJ, Vizeacoumar F, Cheung D, Bahr S, Tsui K, Tebbji F, Sellam A, Istel F, ... ... Mitra RD, et al. Global gene deletion analysis exploring yeast filamentous growth. Science (New York, N.Y.). 337: 1353-6. PMID 22984072 DOI: 10.1126/Science.1224339  0.737
2012 Vallania F, Ramos E, Cresci S, Mitra RD, Druley TE. Detection of rare genomic variants from pooled sequencing using SPLINTER. Journal of Visualized Experiments : Jove. PMID 22760212 DOI: 10.3791/3943  0.396
2012 Reyes A, Sandoval A, Cubillos-Ruiz A, Varley KE, Hernández-Neuta I, Samper S, Martín C, García MJ, Ritacco V, López L, Robledo J, Zambrano MM, Mitra RD, Del Portillo P. IS-seq: a novel high throughput survey of in vivo IS6110 transposition in multiple Mycobacterium tuberculosis genomes. Bmc Genomics. 13: 249. PMID 22703188 DOI: 10.1186/1471-2164-13-249  0.695
2012 Yun Y, Adesanya TM, Mitra RD. A systematic study of gene expression variation at single-nucleotide resolution reveals widespread regulatory roles for uAUGs. Genome Research. 22: 1089-97. PMID 22454232 DOI: 10.1101/Gr.117366.110  0.792
2012 Qi X, Daily K, Nguyen K, Wang H, Mayhew D, Rigor P, Forouzan S, Johnston M, Mitra RD, Baldi P, Sandmeyer S. Retrotransposon profiling of RNA polymerase III initiation sites. Genome Research. 22: 681-92. PMID 22287102 DOI: 10.1101/Gr.131219.111  0.756
2012 Wang H, Mayhew D, Chen X, Johnston M, Mitra RD. "Calling cards" for DNA-binding proteins in mammalian cells. Genetics. 190: 941-9. PMID 22214611 DOI: 10.1534/Genetics.111.137315  0.764
2011 Tessler LA, Mitra RD. Sensitive single-molecule protein quantification and protein complex detection in a microarray format. Proteomics. 11: 4731-5. PMID 22038904 DOI: 10.1002/Pmic.201100361  0.763
2011 Wang H, Mayhew D, Chen X, Johnston M, Mitra RD. Calling Cards enable multiplexed identification of the genomic targets of DNA-binding proteins. Genome Research. 21: 748-55. PMID 21471402 DOI: 10.1101/Gr.114850.110  0.777
2011 Tessler LA, Donahoe CD, Garcia DJ, Jun YS, Elbert DL, Mitra RD. Nanogel surface coatings for improved single-molecule imaging substrates. Journal of the Royal Society, Interface / the Royal Society. 8: 1400-8. PMID 21325313 DOI: 10.1098/Rsif.2010.0669  0.741
2011 Chiappinelli KB, Haynes BC, Schillebeeckx M, Mitra RD, Brent MR, Goodfellow PJ. Abstract 1173: A genomics approach to understanding DICER1's role in tumorigenesis Cancer Research. 71: 1173-1173. DOI: 10.1158/1538-7445.Am2011-1173  0.767
2010 Vallania FL, Druley TE, Ramos E, Wang J, Borecki I, Province M, Mitra RD. High-throughput discovery of rare insertions and deletions in large cohorts. Genome Research. 20: 1711-8. PMID 21041413 DOI: 10.1101/Gr.109157.110  0.365
2010 Varley KE, Mitra RD. Bisulfite Patch PCR enables multiplexed sequencing of promoter methylation across cancer samples. Genome Research. 20: 1279-87. PMID 20627893 DOI: 10.1101/Gr.101212.109  0.732
2010 Mogno I, Vallania F, Mitra RD, Cohen BA. TATA is a modular component of synthetic promoters. Genome Research. 20: 1391-7. PMID 20627890 DOI: 10.1101/Gr.106732.110  0.365
2010 Matkovich SJ, Van Booven DJ, Hindes A, Kang MY, Druley TE, Vallania FL, Mitra RD, Reilly MP, Cappola TP, Dorn GW. Cardiac signaling genes exhibit unexpected sequence diversity in sporadic cardiomyopathy, revealing HSPB7 polymorphisms associated with disease. The Journal of Clinical Investigation. 120: 280-9. PMID 20038796 DOI: 10.1172/Jci39085  0.319
2009 Varley KE, Mitra RD. Nested Patch PCR for highly multiplexed amplification of genomic loci. Cold Spring Harbor Protocols. 2009: pdb.prot5252. PMID 20147217 DOI: 10.1101/Pdb.Prot5252  0.708
2009 Goodman AL, McNulty NP, Zhao Y, Leip D, Mitra RD, Lozupone CA, Knight R, Gordon JI. Identifying genetic determinants needed to establish a human gut symbiont in its habitat. Cell Host & Microbe. 6: 279-89. PMID 19748469 DOI: 10.1016/J.Chom.2009.08.003  0.328
2009 Tessler LA, Reifenberger JG, Mitra RD. Protein quantification in complex mixtures by solid phase single-molecule counting. Analytical Chemistry. 81: 7141-8. PMID 19601620 DOI: 10.1021/Ac901068X  0.752
2009 Varley KE, Mutch DG, Edmonston TB, Goodfellow PJ, Mitra RD. Intra-tumor heterogeneity of MLH1 promoter methylation revealed by deep single molecule bisulfite sequencing. Nucleic Acids Research. 37: 4603-12. PMID 19494183 DOI: 10.1093/Nar/Gkp457  0.691
2009 Druley TE, Vallania FL, Wegner DJ, Varley KE, Knowles OL, Bonds JA, Robison SW, Doniger SW, Hamvas A, Cole FS, Fay JC, Mitra RD. Quantification of rare allelic variants from pooled genomic DNA. Nature Methods. 6: 263-5. PMID 19252504 DOI: 10.1038/Nmeth.1307  0.719
2009 Matkovich SJ, Druley TE, Van Booven DJ, Chun S, Vallania FM, Hindes A, Fay JC, Mitra RD, Dorn II GW. Genetic Diversity and Novel SNP Discovery in Signaling Genes Revealed by Pooled Sequencing of Cardiomyopathy DNAs Journal of Cardiac Failure. 15: S40. DOI: 10.1016/J.Cardfail.2009.06.297  0.365
2008 Varley KE, Mitra RD. Nested Patch PCR enables highly multiplexed mutation discovery in candidate genes. Genome Research. 18: 1844-50. PMID 18849522 DOI: 10.1101/Gr.078204.108  0.717
2008 Wang H, Heinz ME, Crosby SD, Johnston M, Mitra RD. 'Calling Cards' method for high-throughput identification of targets of yeast DNA-binding proteins. Nature Protocols. 3: 1569-77. PMID 18802438 DOI: 10.1038/Nprot.2008.148  0.423
2007 Rieger C, Poppino R, Sheridan R, Moley K, Mitra R, Gottlieb D. Polony analysis of gene expression in ES cells and blastocysts. Nucleic Acids Research. 35: e151. PMID 18073198 DOI: 10.1093/Nar/Gkm1076  0.745
2007 Leparc GG, Mitra RD. A sensitive procedure to detect alternatively spliced mRNA in pooled-tissue samples. Nucleic Acids Research. 35: e146. PMID 18000005 DOI: 10.1093/Nar/Gkm989  0.369
2007 Wang H, Johnston M, Mitra RD. Calling cards for DNA-binding proteins. Genome Research. 17: 1202-9. PMID 17623806 DOI: 10.1101/Gr.6510207  0.462
2007 Leparc GG, Mitra RD. Non-EST-based prediction of novel alternatively spliced cassette exons with cell signaling function in Caenorhabditis elegans and human. Nucleic Acids Research. 35: 3192-202. PMID 17452356 DOI: 10.1093/Nar/Gkm187  0.335
2006 Zhang K, Zhu J, Shendure J, Porreca GJ, Aach JD, Mitra RD, Church GM. Long-range polony haplotyping of individual human chromosome molecules. Nature Genetics. 38: 382-7. PMID 16493423 DOI: 10.1038/Ng1741  0.357
2005 Shendure J, Porreca GJ, Reppas NB, Lin X, McCutcheon JP, Rosenbaum AM, Wang MD, Zhang K, Mitra RD, Church GM. Accurate multiplex polony sequencing of an evolved bacterial genome. Science (New York, N.Y.). 309: 1728-32. PMID 16081699 DOI: 10.1126/Science.1117389  0.372
2004 Mikkilineni V, Mitra RD, Merritt J, DiTonno JR, Church GM, Ogunnaike B, Edwards JS. Digital quantitative measurements of gene expression. Biotechnology and Bioengineering. 86: 117-24. PMID 15052631 DOI: 10.1002/Bit.20048  0.366
2003 Zhu J, Shendure J, Mitra RD, Church GM. Single molecule profiling of alternative pre-mRNA splicing. Science (New York, N.Y.). 301: 836-8. PMID 12907803 DOI: 10.1126/Science.1085792  0.318
2003 Mitra RD, Shendure J, Olejnik J, Edyta-Krzymanska-Olejnik, Church GM. Fluorescent in situ sequencing on polymerase colonies. Analytical Biochemistry. 320: 55-65. PMID 12895469 DOI: 10.1016/S0003-2697(03)00291-4  0.363
2003 Merritt J, DiTonno JR, Mitra RD, Church GM, Edwards JS. Parallel competition analysis of Saccharomyces cerevisiae strains differing by a single base using polymerase colonies. Nucleic Acids Research. 31: e84. PMID 12888536 DOI: 10.1093/Nar/Gng084  0.353
2003 Mitra RD, Butty VL, Shendure J, Williams BR, Housman DE, Church GM. Digital genotyping and haplotyping with polymerase colonies. Proceedings of the National Academy of Sciences of the United States of America. 100: 5926-31. PMID 12730373 DOI: 10.1073/Pnas.0936399100  0.342
2002 Cohen BA, Pilpel Y, Mitra RD, Church GM. Discrimination between paralogs using microarray analysis: application to the Yap1p and Yap2p transcriptional networks. Molecular Biology of the Cell. 13: 1608-14. PMID 12006656 DOI: 10.1091/Mbc.01-10-0472  0.408
2000 Cohen BA, Mitra RD, Hughes JD, Church GM. A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression. Nature Genetics. 26: 183-6. PMID 11017073 DOI: 10.1038/79896  0.337
1999 Mitra RD, Church GM. In situ localized amplification and contact replication of many individual DNA molecules Nucleic Acids Research. 27: e34. PMID 10572186 DOI: 10.1093/Nar/27.24.E34  0.355
Low-probability matches (unlikely to be authored by this person)
2012 Chatterjee R, Ramos E, Hoffman M, VanWinkle J, Martin DR, Davis TK, Hoshi M, Hmiel SP, Beck A, Hruska K, Coplen D, Liapis H, Mitra R, Druley T, Austin P, et al. Traditional and targeted exome sequencing reveals common, rare and novel functional deleterious variants in RET-signaling complex in a cohort of living US patients with urinary tract malformations. Human Genetics. 131: 1725-38. PMID 22729463 DOI: 10.1007/S00439-012-1181-3  0.283
2004 Mitra RD, Shendure J, Olejnik J, Church GM. CorrigendumErratum to “Fluorescent in situ sequencing on polymerase colonies” [Anal. Biochem. 320 (2003) 55–65] Analytical Biochemistry. 328: 245. DOI: 10.1016/J.Ab.2004.03.002  0.281
2016 Kfoury N, Qi Z, Berrett K, Kim A, Gertz J, Mitra R, Rubin J. GENT-18. DIFFERENTIAL BRD4-BOUND STRETCH/SUPER ENHANCERS DRIVE CRITICAL SEX DIFFERENCES IN GBM PHENOTYPE Neuro-Oncology. 18: vi77-vi77. DOI: 10.1093/Neuonc/Now212.324  0.278
2004 Buhler JD, Souvenir RM, Zhang W, Mitra RD. Design of a high-throughput assay for alternative splicing using polymerase colonies. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 5-16. PMID 14992488  0.277
2024 Guo J, Zhang W, Chen X, Yen A, Chen L, Shively CA, Li D, Wang T, Dougherty JD, Mitra RD. Pycallingcards: an integrated environment for visualizing, analyzing, and interpreting calling cards data. Bioinformatics (Oxford, England). PMID 38323623 DOI: 10.1093/bioinformatics/btae070  0.274
2012 Cruchaga C, Haller G, Chakraverty S, Mayo K, Vallania FL, Mitra RD, Faber K, Williamson J, Bird T, Diaz-Arrastia R, Foroud TM, Boeve BF, Graff-Radford NR, St Jean P, Lawson M, et al. Rare variants in APP, PSEN1 and PSEN2 increase risk for AD in late-onset Alzheimer's disease families. Plos One. 7: e31039. PMID 22312439 DOI: 10.1371/Journal.Pone.0031039  0.271
2014 Spencer DH, Tyagi M, Vallania F, Bredemeyer AJ, Pfeifer JD, Mitra RD, Duncavage EJ. Performance of common analysis methods for detecting low-frequency single nucleotide variants in targeted next-generation sequence data. The Journal of Molecular Diagnostics : Jmd. 16: 75-88. PMID 24211364 DOI: 10.1016/J.Jmoldx.2013.09.003  0.27
2012 Haller G, Druley T, Vallania FL, Mitra RD, Li P, Akk G, Steinbach JH, Breslau N, Johnson E, Hatsukami D, Stitzel J, Bierut LJ, Goate AM. Rare missense variants in CHRNB4 are associated with reduced risk of nicotine dependence. Human Molecular Genetics. 21: 647-55. PMID 22042774 DOI: 10.1093/Hmg/Ddr498  0.26
2017 Kfoury N, Qi Z, Sankararaman S, Wilkinson M, Broestl L, Berrett K, Gertz J, Mitra R, Rubin J. GENE-16. Brd4-BOUND STRETCH/SUPER ENHANCER USAGE UNDERLIES SEXUAL DIMORPHISM IN GLIOBLASTOMA Neuro-Oncology. 19: vi95-vi95. DOI: 10.1093/Neuonc/Nox168.390  0.259
1996 Mitra RD, Silva CM, Youvan DC. Fluorescence resonance energy transfer between blue-emitting and red-shifted excitation derivatives of the green fluorescent protein. Gene. 173: 13-7. PMID 8707050 DOI: 10.1016/0378-1119(95)00768-7  0.255
2007 Rawls AS, Schultz SA, Mitra RD, Wolff T. Bedraggled, a putative transporter, influences the tissue polarity complex during the R3/R4 fate decision in the Drosophila eye. Genetics. 177: 313-28. PMID 17890365 DOI: 10.1534/Genetics.107.075945  0.255
2015 Cady J, Allred P, Bali T, Pestronk A, Goate A, Miller TM, Mitra RD, Ravits J, Harms MB, Baloh RH. Amyotrophic lateral sclerosis onset is influenced by the burden of rare variants in known amyotrophic lateral sclerosis genes. Annals of Neurology. 77: 100-13. PMID 25382069 DOI: 10.1002/Ana.24306  0.255
2004 Shendure J, Mitra RD, Varma C, Church GM. Advanced sequencing technologies: methods and goals. Nature Reviews. Genetics. 5: 335-44. PMID 15143316 DOI: 10.1038/Nrg1325  0.25
2013 Donahoe CD, Cohen TL, Li W, Nguyen PK, Fortner JD, Mitra RD, Elbert DL. Ultralow protein adsorbing coatings from clickable PEG nanogel solutions: benefits of attachment under salt-induced phase separation conditions and comparison with PEG/albumin nanogel coatings. Langmuir : the Acs Journal of Surfaces and Colloids. 29: 4128-39. PMID 23441808 DOI: 10.1021/La3051115  0.249
2023 Recio PS, Mitra NJ, Shively CA, Song D, Jaramillo G, Lewis KS, Chen X, Mitra RD. Zinc cluster transcription factors frequently activate target genes using a non-canonical half-site binding mode. Nucleic Acids Research. PMID 37125648 DOI: 10.1093/nar/gkad320  0.235
2021 Kfoury N, Qi Z, Prager BC, Wilkinson MN, Broestl L, Berrett KC, Moudgil A, Sankararaman S, Chen X, Gertz J, Rich JN, Mitra RD, Rubin JB. Brd4-bound enhancers drive cell-intrinsic sex differences in glioblastoma. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33850013 DOI: 10.1073/pnas.2017148118  0.224
2014 Wambach JA, Wegner DJ, Heins HB, Druley TE, Mitra RD, Hamvas A, Cole FS. Synonymous ABCA3 variants do not increase risk for neonatal respiratory distress syndrome. The Journal of Pediatrics. 164: 1316-21.e3. PMID 24657120 DOI: 10.1016/J.Jpeds.2014.02.021  0.219
1975 Mitra R, Gross RD, Varner JE. An intact assay for enzymes that labilize C--H bonds. Analytical Biochemistry. 64: 102-9. PMID 1137080 DOI: 10.1016/0003-2697(75)90410-8  0.207
2016 Yu H, Artomov M, Brähler S, Stander MC, Shamsan G, Sampson MG, White JM, Kretzler M, Miner JH, Jain S, Winkler CA, Mitra RD, Kopp JB, Daly MJ, Shaw AS. A role for genetic susceptibility in sporadic focal segmental glomerulosclerosis. The Journal of Clinical Investigation. PMID 26927868 DOI: 10.1172/Jci87342  0.204
2012 Wambach JA, Wegner DJ, Depass K, Heins H, Druley TE, Mitra RD, An P, Zhang Q, Nogee LM, Cole FS, Hamvas A. Single ABCA3 mutations increase risk for neonatal respiratory distress syndrome. Pediatrics. 130: e1575-82. PMID 23166334 DOI: 10.1542/Peds.2012-0918  0.199
2023 Shively CA, Dong F, Mitra RD. A Suite of New Strain Construction Vectors for Gene Expression Knockdown in Budding Yeast. Acs Synthetic Biology. PMID 36650116 DOI: 10.1021/acssynbio.2c00547  0.199
2023 Yen A, Mateusiak C, Sarafinovska S, Gachechiladze MA, Guo J, Chen X, Moudgil A, Cammack AJ, Hoisington-Lopez J, Crosby M, Brent MR, Mitra RD, Dougherty JD. Correction: Calling Cards: A Customizable Platform to Longitudinally Record Protein-DNA Interactions Over Time in Cells and Tissues. Current Protocols. 3: e928. PMID 37855731 DOI: 10.1002/cpz1.928  0.194
2022 Yenkin AL, Bramley JC, Kremitzki CL, Waligorski JE, Liebeskind MJ, Xu XE, Chandrasekaran VD, Vakaki MA, Bachman GW, Mitra RD, Milbrandt JD, Buchser WJ. Pooled image-base screening of mitochondria with microraft isolation distinguishes pathogenic mitofusin 2 mutations. Communications Biology. 5: 1128. PMID 36284160 DOI: 10.1038/s42003-022-04089-y  0.193
2020 Lalli MA, Chen X, Langmade SJ, Fronick CC, Sawyer CS, Burcea LC, Fulton RS, Heinz M, Buchser WJ, Head RD, Mitra RD, Milbrandt J. Rapid and extraction-free detection of SARS-CoV-2 from saliva with colorimetric LAMP. Medrxiv : the Preprint Server For Health Sciences. PMID 32511508 DOI: 10.1101/2020.05.07.20093542  0.189
2012 Leonard A, Wolff J, Sengupta R, Marassa J, Piwnica-Worms D, Rubin J, Pollack I, Jakacki R, Butterfield L, Okada H, Fangusaro J, Warren KE, Mullins C, Jurgen P, Julia S, ... ... Mitra RD, et al. HIGH GRADE GLIOMAS Neuro-Oncology. 14: i56-i68. DOI: 10.1093/Neuonc/Nos102  0.188
1976 Mitra R, Burton J, Varner JE. Deuterium oxide as a tool for the study of amino acid metabolism. Analytical Biochemistry. 70: 1-17. PMID 1259133 DOI: 10.1016/S0003-2697(76)80042-5  0.186
2021 Liu C, Yang X, Duffy BF, Hoisington-Lopez J, Crosby M, Porche-Sorbet R, Saito K, Berry R, Swamidass V, Mitra RD. High-resolution HLA typing by long reads from the R10.3 Oxford nanopore flow cells. Human Immunology. PMID 33612390 DOI: 10.1016/j.humimm.2021.02.005  0.168
1998 Ostrowska E, Muralitharan M, Chandler S, Volker P, Hetherington S, Mitra R, Dunshea F. Optimized conditions for RAPD analysis in Pinus radiata In Vitro Cellular and Developmental Biology - Plant. 34: 225-230.  0.157
2022 Sams EI, Ng JK, Tate V, Claire Hou YC, Cao Y, Antonacci-Fulton L, Belhassan K, Neidich J, Mitra RD, Cole FS, Dickson P, Milbrandt J, Turner TN. From karyotypes to precision genomics in 9p deletion and duplication syndromes. Hgg Advances. 3: 100081. PMID 35047865 DOI: 10.1016/j.xhgg.2021.100081  0.149
2023 Sample RA, Nogueira MF, Mitra RD, Puram SV. Epigenetic regulation of hybrid epithelial-mesenchymal cell states in cancer. Oncogene. PMID 37344626 DOI: 10.1038/s41388-023-02749-9  0.143
2013 Sharma MK, Phillips J, Agarwal S, Wiggins WS, Shrivastava S, Koul SB, Bhattacharjee M, Houchins CD, Kalakota RR, George B, Meyer RR, Spencer DH, Lockwood CM, Nguyen TT, Duncavage EJ, ... ... Mitra RD, et al. Clinical genomicist workstation. Amia Joint Summits On Translational Science Proceedings Amia Summit On Translational Science. 2013: 156-7. PMID 24303327  0.142
2024 Yen A, Chen X, Skinner DD, Leti F, Crosby M, Hoisington-Lopez J, Wu Y, Chen J, Mitra RD, Dougherty JD. MYT1L deficiency impairs excitatory neuron trajectory during cortical development. Biorxiv : the Preprint Server For Biology. PMID 38496654 DOI: 10.1101/2024.03.06.583632  0.132
2022 Yim AKY, Wang PL, Bermingham JR, Hackett A, Strickland A, Miller TM, Ly C, Mitra RD, Milbrandt J. Disentangling glial diversity in peripheral nerves at single-nuclei resolution. Nature Neuroscience. 25: 238-251. PMID 35115729 DOI: 10.1038/s41593-021-01005-1  0.128
2020 Lalli MA, Langmade SJ, Chen X, Fronick CC, Sawyer CS, Burcea LC, Wilkinson MN, Fulton RS, Heinz M, Buchser WJ, Head RD, Mitra RD, Milbrandt J. Rapid and extraction-free detection of SARS-CoV-2 from saliva by colorimetric reverse-transcription loop-mediated isothermal amplification. Clinical Chemistry. PMID 33098427 DOI: 10.1093/clinchem/hvaa267  0.114
1952 MITRA RD, ROY DN. Notes on sandflies. I. Phlebotomus smithi sp. nov Indian Medical Gazette. 87: 187-188. PMID 12980687  0.033
1952 MITRA RD, ROY DN. Notes on sandflies. II. Phlebotomus thapari n. sp Indian Medical Gazette. 87: 188-193. PMID 12980688  0.027
1953 Mitra RD, Mitra SD. A new species of Raphignathus (Acarina) associated with Phlebotomus in India Zeitschrift FüR Parasitenkunde. 15: 429-432. PMID 13103547 DOI: 10.1007/BF00260167  0.027
1952 MITRA RD. Modified setae on the palp of blood sucking midges Zeitschrift FüR Tropenmedizin Und Parasitologie. 3: 550-552. PMID 14959281  0.02
1954 CHATTERJEE AK, MITRA RD. Experiments on the induced resistance to Benzene hexachloride in the house fly, Musca nebulo F Zeitschrift FüR Tropenmedizin Und Parasitologie. 5: 113-115. PMID 13170459  0.019
1954 Mitra RD, Roy DN. Phlebotomus squamipleuris var. poonaensis nov. var. - Diptera : psychodidae Zeitschrift FüR Parasitenkunde. 16: 191-194. PMID 13196500 DOI: 10.1007/BF00260470  0.016
1953 Mitra RD, Mitra SD. A discussion on the subgeneric position of Phlebotomus (diptera: psychodidae) Zeitschrift FüR Parasitenkunde. 15: 433-436. PMID 13103548 DOI: 10.1007/BF00260168  0.013
1954 MITRA RD. The medical significance of Phlebotomus. | Die medizinische Bedeutung der Phlebotomen Zeitschrift FüR Tropenmedizin Und Parasitologie. 5: 307-317. PMID 13227353  0.01
1956 MITRA RD. Notes on sandflies, sandflies of Poona district Zeitschrift FüR Tropenmedizin Und Parasitologie. 7: 228-240. PMID 13353436  0.01
1955 MITRA RD. Notes on phlebotomus; phlebotomus of West-Ghats. | Notizen über Phlebotomen; Phlebotomen der West-Ghats Zeitschrift FüR Tropenmedizin Und Parasitologie. 6: 80-85. PMID 14387069  0.01
1954 MITRA RD. Remarks on sandflies (Phlebotomi); the geographical distribution of the genus Phlebotomus in the state of Bombay, India. | Bemerkungen über Sandfliegen (Phlebotomen); über die geographische Verbreitung des Genus Phlebotomus im Staat Bombay, Indien Zeitschrift FüR Tropenmedizin Und Parasitologie. 5: 109-113. PMID 13170458  0.01
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