Yuying Xie - Publications

Affiliations: 
2012 Genetics & Molecular Biology University of North Carolina, Chapel Hill, Chapel Hill, NC 

13/47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Bissahoyo AC, Xie Y, Yang L, Pearsall RS, Lee D, Elliott RW, Demant P, McMillan L, Pardo-Manuel de Villena F, Angel JM, Threadgill DW. A New Polygenic Model for Non-familial Colorectal Cancer Inheritance Based on the Genetic Architecture of the Azoxymethane-Induced Mouse Model. Genetics. PMID 31879319 DOI: 10.1534/Genetics.119.302833  0.663
2019 Hao Y, Yan M, Heath BR, Lei YL, Xie Y. Fast and robust deconvolution of tumor infiltrating lymphocyte from expression profiles using least trimmed squares. Plos Computational Biology. 15: e1006976. PMID 31059559 DOI: 10.1371/Journal.Pcbi.1006976  0.304
2017 Mosedale M, Kim Y, Brock WJ, Roth SE, Wiltshire T, Scott Eaddy J, Keele GR, Corty RW, Xie Y, Valdar W, Watkins PB. Candidate Risk Factors and Mechanisms for Tolvaptan-Induced Liver Injury Are Identified Using a Collaborative Cross Approach. Toxicological Sciences : An Official Journal of the Society of Toxicology. PMID 28115652 DOI: 10.1093/Toxsci/Kfw269  0.376
2015 Crowley JJ, Zhabotynsky V, Sun W, Huang S, Pakatci IK, Kim Y, Wang JR, Morgan AP, Calaway JD, Aylor DL, Yun Z, Bell TA, Buus RJ, Calaway ME, Didion JP, ... ... Xie Y, et al. Corrigendum: Analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance. Nature Genetics. 47: 690. PMID 26018903 DOI: 10.1038/Ng0615-690A  0.681
2015 Crowley JJ, Zhabotynsky V, Sun W, Huang S, Pakatci IK, Kim Y, Wang JR, Morgan AP, Calaway JD, Aylor DL, Yun Z, Bell TA, Buus RJ, Calaway ME, Didion JP, ... ... Xie Y, et al. Analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance. Nature Genetics. 47: 353-60. PMID 25730764 DOI: 10.1038/Ng.3222  0.706
2014 Phillippi J, Xie Y, Miller DR, Bell TA, Zhang Z, Lenarcic AB, Aylor DL, Krovi SH, Threadgill DW, Pardo-Manuel De Villena F, Wang W, Valdar W, Frelinger JA. Using the emerging Collaborative Cross to probe the immune system Genes and Immunity. 15: 38-46. PMID 24195963 DOI: 10.1038/Gene.2013.59  0.606
2012 Iraqi FA, Mahajne M, Salaymah Y, Sandovski H, Tayem H, Vered K, Balmer L, Hall M, Manship G, Morahan G, Pettit K, Scholten J, Tweedie K, Wallace A, Weerasekera L, ... ... Xie Y, et al. The genome architecture of the collaborative cross mouse genetic reference population Genetics. 190: 389-401. PMID 22345608 DOI: 10.1534/Genetics.111.132639  0.708
2011 Aylor DL, Valdar W, Foulds-Mathes W, Buus RJ, Verdugo RA, Baric RS, Ferris MT, Frelinger JA, Heise M, Frieman MB, Gralinski LE, Bell TA, Didion JD, Hua K, Nehrenberg DL, ... ... Xie Y, et al. Genetic analysis of complex traits in the emerging Collaborative Cross. Genome Research. 21: 1213-22. PMID 21406540 DOI: 10.1101/Gr.111310.110  0.651
2010 Eversley CD, Clark T, Xie Y, Steigerwalt J, Bell TA, de Villena FP, Threadgill DW. Genetic mapping and developmental timing of transmission ratio distortion in a mouse interspecific backcross. Bmc Genetics. 11: 98. PMID 21044349 DOI: 10.1186/1471-2156-11-98  0.673
2010 Zhang X, Pan F, Xie Y, Zou F, Wang W. COE: a general approach for efficient genome-wide two-locus epistasis test in disease association study. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 401-15. PMID 20377453 DOI: 10.1089/Cmb.2009.0155  0.396
2007 Zhang D, Shao C, Shao M, Yan P, Wang Y, Liu Y, Liu W, Lin T, Xie Y, Zhao Y, Lu D, Li Y, Jin L. Effect of mu-opioid receptor gene polymorphisms on heroin-induced subjective responses in a Chinese population. Biological Psychiatry. 61: 1244-51. PMID 17157823 DOI: 10.1016/J.Biopsych.2006.07.012  0.329
2006 Li Y, Shao C, Zhang D, Zhao M, Lin L, Yan P, Xie Y, Jiang K, Jin L. The effect of dopamine D2, D5 receptor and transporter (SLC6A3) polymorphisms on the cue-elicited heroin craving in Chinese. American Journal of Medical Genetics. Part B, Neuropsychiatric Genetics : the Official Publication of the International Society of Psychiatric Genetics. 141: 269-73. PMID 16526040 DOI: 10.1002/Ajmg.B.30264  0.33
2006 Li Y, Zhang D, Jin W, Shao C, Yan P, Xu C, Sheng H, Liu Y, Yu J, Xie Y, Zhao Y, Lu D, Nebert DW, Harrison DC, Huang W, et al. Mitochondrial aldehyde dehydrogenase-2 (ALDH2) Glu504Lys polymorphism contributes to the variation in efficacy of sublingual nitroglycerin. The Journal of Clinical Investigation. 116: 506-11. PMID 16440063 DOI: 10.1172/Jci26564  0.36
Low-probability matches (unlikely to be authored by this person)
2020 Tan YS, Heath BR, Hill BD, Luo X, Rizvi SM, Moghbeli T, Hu H, Siismets E, Wen H, Xie Y, Sun D, Young S, Zou W, Wen F, Lei YL. Abstract A08: Resolving STING-mediated tumor immune microenvironment shift at single-cell resolution Clinical Cancer Research. 26. DOI: 10.1158/1557-3265.Aacrahns19-A08  0.292
2020 Raghavan S, Mehta P, Xie Y, Lei YL, Mehta G. Abstract B07: Ovarian cancer stem-like cells and alternately activated macrophages reciprocally interact through the WNT pathway to promote protumoral and malignant phenotypes in 3D engineered microenvironments Clinical Cancer Research. 26. DOI: 10.1158/1557-3265.Ovca19-B07  0.283
2012 Solberg Woods LC, Holl KL, Oreper D, Xie Y, Tsaih SW, Valdar W. Fine-mapping diabetes-related traits, including insulin resistance, in heterogeneous stock rats Physiological Genomics. 44: 1013-1026. PMID 22947656 DOI: 10.1152/Physiolgenomics.00040.2012  0.282
2016 Xie Y, Liu Y, Valdar W. Joint Estimation of Multiple Dependent Gaussian Graphical Models with Applications to Mouse Genomics. Biometrika. 103: 493-511. PMID 29038606 DOI: 10.1093/Biomet/Asw035  0.277
2016 Lei Y, Xie Y, Tan YS, Prince ME, Moyer JS, Nör J, Wolf GT. Telltale tumor infiltrating lymphocytes (TIL) in oral, head & neck cancer. Oral Oncology. PMID 27553942 DOI: 10.1016/J.Oraloncology.2016.08.003  0.261
2019 Raghavan S, Mehta P, Xie Y, Lei YL, Mehta G. Ovarian cancer stem cells and macrophages reciprocally interact through the WNT pathway to promote pro-tumoral and malignant phenotypes in 3D engineered microenvironments. Journal For Immunotherapy of Cancer. 7: 190. PMID 31324218 DOI: 10.1186/S40425-019-0666-1  0.245
2020 Zhu F, Ju Y, Wang W, Wang Q, Guo R, Ma Q, Sun Q, Fan Y, Xie Y, Yang Z, Jie Z, Zhao B, Xiao L, Yang L, Zhang T, et al. Metagenome-wide association of gut microbiome features for schizophrenia. Nature Communications. 11: 1612. PMID 32235826 DOI: 10.1038/S41467-020-15457-9  0.24
2019 Zhu F, Guo R, Wang W, Ju Y, Wang Q, Ma Q, Sun Q, Fan Y, Xie Y, Yang Z, Jie Z, Zhao B, Xiao L, Yang L, Zhang T, et al. Transplantation of microbiota from drug-free patients with schizophrenia causes schizophrenia-like abnormal behaviors and dysregulated kynurenine metabolism in mice. Molecular Psychiatry. PMID 31391545 DOI: 10.1038/S41380-019-0475-4  0.232
2019 Luo X, Donnelly CR, Gong W, Heath BR, Hao Y, Donnelly LA, Moghbeli T, Tan YS, Lin X, Bellile E, Kansy BA, Carey TE, Brenner JC, Cheng L, Polverini PJ, ... ... Xie Y, et al. HPV16 drives cancer immune escape via NLRX1-mediated degradation of STING. The Journal of Clinical Investigation. PMID 31874109 DOI: 10.1172/Jci129497  0.209
2018 Tan YS, Sansanaphongpricha K, Xie Y, Donnelly CR, Luo X, Heath BR, Zhao X, Bellile EL, Hu H, Chen H, Polverini PJ, Chen Q, Young S, Carey TE, Nör JE, et al. Mitigating SOX2-potentiated immune escape of Head and Neck Squamous Cell Carcinoma with a STING-inducing nanosatellite vaccine. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 29769207 DOI: 10.1158/1078-0432.Ccr-17-2807  0.187
2021 Gong W, Donnelly CR, Heath BR, Bellile E, Donnelly LA, Taner HF, Broses L, Brenner JC, Chinn SB, Ji RR, Wen H, Nör JE, Wang J, Wolf GT, Xie Y, et al. Cancer-specific type-I interferon receptor signaling promotes cancer stemness and effector CD8+ T-cell exhaustion. Oncoimmunology. 10: 1997385. PMID 34858725 DOI: 10.1080/2162402X.2021.1997385  0.148
2023 Tang W, Wen H, Liu R, Ding J, Jin W, Xie Y, Liu H, Tang J. Single-Cell Multimodal Prediction via Transformers. Arxiv. PMID 37645040  0.118
2024 Lo BC, Kryczek I, Yu J, Vatan L, Caruso R, Matsumoto M, Sato Y, Shaw MH, Inohara N, Xie Y, Lei YL, Zou W, Núñez G. Microbiota-dependent activation of CD4 T cells induces CTLA-4 blockade-associated colitis via Fcγ receptors. Science (New York, N.Y.). 383: 62-70. PMID 38175892 DOI: 10.1126/science.adh8342  0.116
2022 Little A, Xie Y, Sun Q. An analysis of classical multidimensional scaling with applications to clustering. Information and Inference : a Journal of the Ima. 12: 72-112. PMID 36761434 DOI: 10.1093/imaiai/iaac004  0.102
2017 Xie Y, Zhu Y, Cotton CA, Wu P. A model averaging approach for estimating propensity scores by optimizing balance. Statistical Methods in Medical Research. 962280217715487. PMID 28712346 DOI: 10.1177/0962280217715487  0.098
2020 Xie Y, Cotton C, Zhu Y. Multiply robust estimation of causal quantile treatment effects. Statistics in Medicine. PMID 32857876 DOI: 10.1002/Sim.8722  0.09
2021 Wang CW, Hao Y, Di Gianfilippo R, Sugai J, Li J, Gong W, Kornman KS, Wang HL, Kamada N, Xie Y, Giannobile WV, Lei YL. Machine learning-assisted immune profiling stratifies peri-implantitis patients with unique microbial colonization and clinical outcomes. Theranostics. 11: 6703-6716. PMID 34093848 DOI: 10.7150/thno.57775  0.084
2019 Li L, Zhao Y, Lang B, Xie Y, Shaowu Meng M, He Y, Yang L, Liu A. Microbial transformation of diosgenin to diosgenone by Wickerhamomyces anomalus JQ-1 obtained from Naxi traditional Jiu Qu. Bioorganic Chemistry. 95: 103508. PMID 31927315 DOI: 10.1016/j.bioorg.2019.103508  0.082
2023 Heath BR, Gong W, Taner HF, Broses L, Okuyama K, Cheng W, Jin M, Fitzsimonds ZR, Manousidaki A, Wu Y, Zhang S, Wen H, Chinn SB, Bartee E, Xie Y, et al. Saturated fatty acids dampen the immunogenicity of cancer by suppressing STING. Cell Reports. 42: 112303. PMID 36952341 DOI: 10.1016/j.celrep.2023.112303  0.081
2019 Lyu H, Sha N, Qin S, Yan M, Xie Y, Wang R. Manifold Denoising by Nonlinear Robust Principal Component Analysis. Advances in Neural Information Processing Systems. 32. PMID 34305366  0.077
2022 Hong HS, Mbah NE, Shan M, Loesel K, Lin L, Sajjakulnukit P, Correa LO, Andren A, Lin J, Hayashi A, Magnuson B, Chen J, Li Z, Xie Y, Zhang L, et al. OXPHOS promotes apoptotic resistance and cellular persistence in T17 cells in the periphery and tumor microenvironment. Science Immunology. 7: eabm8182. PMID 36399539 DOI: 10.1126/sciimmunol.abm8182  0.065
2022 Zhai Z, Lei YL, Wang R, Xie Y. Supervised Capacity Preserving Mapping: A Clustering Guided Visualization Method for scRNAseq data. Bioinformatics (Oxford, England). PMID 35253834 DOI: 10.1093/bioinformatics/btac131  0.065
2017 Gao X, Liu Y, Xie Y, Wang Y, Qi S. Remote ischemic postconditioning confers neuroprotective effects via inhibition of the BID-mediated mitochondrial apoptotic pathway. Molecular Medicine Reports. PMID 28560462 DOI: 10.3892/mmr.2017.6652  0.058
2022 Liu T, Tong X, Tian S, Xie Y, Zhu M, Feng B, Pan X, Zheng R, Wu S, Zhao D, Chen Y, Lu B, Qiu M. Theoretical modeling of ice lithography on amorphous solid water. Nanoscale. PMID 35703448 DOI: 10.1039/d2nr00594h  0.058
2023 Dai L, Qin F, Xie Y, Zhang B, Zhang Z, Liang S, Chen F, Huang X, Wang H. Antitumor activity and mechanisms of dual EGFR/DNA-targeting strategy for the treatment of lung cancer with EGFR mutation. Bioorganic Chemistry. 135: 106510. PMID 37018899 DOI: 10.1016/j.bioorg.2023.106510  0.054
2022 Steigmann L, Maekawa S, Kauffmann F, Reiss J, Cornett A, Sugai J, Venegas J, Fan X, Xie Y, Giannobile WV, Pop-Busui R, Lombaert IMA. Changes in salivary biomarkers associated with periodontitis and diabetic neuropathy in individuals with type 1 diabetes. Scientific Reports. 12: 11284. PMID 35788667 DOI: 10.1038/s41598-022-15430-0  0.05
2016 Ma X, Xie Y, Chen Y, Han B, Li J, Qi S. Post-ischemia Mdivi-1 Treatment Protects against Ischemia/reperfusion-induced Brain Injury in a Rat Model. Neuroscience Letters. PMID 27542342 DOI: 10.1016/j.neulet.2016.08.026  0.039
2022 Barnett KC, Xie Y, Asakura T, Song D, Liang K, Taft-Benz SA, Guo H, Yang S, Okuda K, Gilmore RC, Loome JF, Oguin Iii TH, Sempowski GD, Randell SH, Heise MT, et al. An epithelial-immune circuit amplifies inflammasome and IL-6 responses to SARS-CoV-2. Cell Host & Microbe. PMID 36563691 DOI: 10.1016/j.chom.2022.12.005  0.038
2014 Xie Y, Li J, Fan G, Qi S, Li B. Reperfusion promotes mitochondrial biogenesis following focal cerebral ischemia in rats. Plos One. 9: e92443. PMID 24667167 DOI: 10.1371/journal.pone.0092443  0.027
2022 Xie Y, Li C, Li M, Liu F, Taukenova M. An overview of deterministic and probabilistic forecasting methods of wind energy. Iscience. 26: 105804. PMID 36624842 DOI: 10.1016/j.isci.2022.105804  0.025
2023 Di Gianfilippo R, Wang CW, Xie Y, Kinney J, Sugai J, Giannobile WV, Wang HL. Effect of Laser-Assisted Reconstructive Surgical Therapy of Peri-implantitis on Protein Biomarkers and Bacterial Load. Clinical Oral Implants Research. PMID 36856540 DOI: 10.1111/clr.14059  0.018
2014 Song J, Jiang M, Qi G, Xie Y, Wang H, Tian Y, Qu J, Zhang X, Li H. [Effect of airway humidification on lung injury induced by mechanical ventilation]. Zhonghua Wei Zhong Bing Ji Jiu Yi Xue. 26: 884-9. PMID 25476081 DOI: 10.3760/cma.j.issn.2095-4352.2014.12.008  0.014
2021 Li J, Huang Y, Su M, Xie Y, Chen D. Dual light-driven p-ZnFeO/n-TiO catalyst: Benzene-breaking reaction for malachite green. Environmental Research. 112081. PMID 34597665 DOI: 10.1016/j.envres.2021.112081  0.013
2009 Wang YL, Li HB, Wang XH, Xie YY. [Reduction in cost of stay in intensive care unit with price education program of drugs]. Zhongguo Wei Zhong Bing Ji Jiu Yi Xue = Chinese Critical Care Medicine = Zhongguo Weizhongbing Jijiuyixue. 19: 492-5. PMID 17708849  0.01
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