Avram J. Holmes - Publications

Affiliations: 
Harvard University, Cambridge, MA, United States 

55 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Baker JT, Dillon DG, Patrick LM, Roffman JL, Brady RO, Pizzagalli DA, Öngür D, Holmes AJ. Functional connectomics of affective and psychotic pathology. Proceedings of the National Academy of Sciences of the United States of America. PMID 30988201 DOI: 10.1073/pnas.1820780116  1
2019 Li J, Kong R, Liégeois R, Orban C, Tan Y, Sun N, Holmes AJ, Sabuncu MR, Ge T, Yeo BTT. Global signal regression strengthens association between resting-state functional connectivity and behavior. Neuroimage. PMID 30974241 DOI: 10.1016/j.neuroimage.2019.04.016  1
2019 DeCross SN, Farabaugh AH, Holmes AJ, Ward M, Boeke EA, Wolthusen RPF, Coombs G, Nyer M, Fava M, Buckner RL, Holt DJ. Increased amygdala-visual cortex connectivity in youth with persecutory ideation. Psychological Medicine. 1-11. PMID 30744715 DOI: 10.1017/S0033291718004221  1
2018 Kernbach JM, Yeo BTT, Smallwood J, Margulies DS, Thiebaut de Schotten M, Walter H, Sabuncu MR, Holmes AJ, Gramfort A, Varoquaux G, Thirion B, Bzdok D. Subspecialization within default mode nodes characterized in 10,000 UK Biobank participants. Proceedings of the National Academy of Sciences of the United States of America. PMID 30420501 DOI: 10.1073/pnas.1804876115  1
2018 Kong R, Li J, Orban C, Sabuncu MR, Liu H, Schaefer A, Sun N, Zuo XN, Holmes AJ, Eickhoff SB, Yeo BTT. Spatial Topography of Individual-Specific Cortical Networks Predicts Human Cognition, Personality, and Emotion. Cerebral Cortex (New York, N.Y. : 1991). PMID 29878084 DOI: 10.1093/cercor/bhy123  1
2018 Anderson KM, Krienen FM, Choi EY, Reinen JM, Yeo BTT, Holmes AJ. Gene expression links functional networks across cortex and striatum. Nature Communications. 9: 1428. PMID 29651138 DOI: 10.1038/s41467-018-03811-x  1
2018 Reinen JM, Chén OY, Hutchison RM, Yeo BTT, Anderson KM, Sabuncu MR, Öngür D, Roffman JL, Smoller JW, Baker JT, Holmes AJ. The human cortex possesses a reconfigurable dynamic network architecture that is disrupted in psychosis. Nature Communications. 9: 1157. PMID 29559638 DOI: 10.1038/s41467-018-03462-y  1
2018 Holmes AJ, Patrick LM. The Myth of Optimality in Clinical Neuroscience. Trends in Cognitive Sciences. PMID 29475637 DOI: 10.1016/j.tics.2017.12.006  1
2018 Rosenberg MD, Casey BJ, Holmes AJ. Prediction complements explanation in understanding the developing brain. Nature Communications. 9: 589. PMID 29467408 DOI: 10.1038/s41467-018-02887-9  0.4
2017 Ge T, Holmes AJ, Buckner RL, Smoller JW, Sabuncu MR. Reply to Risk and Zhu: Mixed-effects modeling as a principled approach to heritability analysis with repeat measurements. Proceedings of the National Academy of Sciences of the United States of America. PMID 29288224 DOI: 10.1073/pnas.1719882115  1
2017 Schaefer A, Kong R, Gordon EM, Laumann TO, Zuo XN, Holmes AJ, Eickhoff SB, Yeo BTT. Local-Global Parcellation of the Human Cerebral Cortex from Intrinsic Functional Connectivity MRI. Cerebral Cortex (New York, N.Y. : 1991). 1-20. PMID 28981612 DOI: 10.1093/cercor/bhx179  1
2017 Ge T, Holmes AJ, Buckner RL, Smoller JW, Sabuncu MR. Heritability analysis with repeat measurements and its application to resting-state functional connectivity. Proceedings of the National Academy of Sciences of the United States of America. PMID 28484032 DOI: 10.1073/pnas.1700765114  1
2017 Dal Monte O, Piva M, Anderson KM, Tringides M, Holmes AJ, Chang SWC. Oxytocin under opioid antagonism leads to supralinear enhancement of social attention. Proceedings of the National Academy of Sciences of the United States of America. PMID 28461466 DOI: 10.1073/pnas.1702725114  0.76
2017 Hibar DP, Adams HH, Jahanshad N, Chauhan G, Stein JL, Hofer E, Renteria ME, Bis JC, Arias-Vasquez A, Ikram MK, Desrivières S, Vernooij MW, Abramovic L, Alhusaini S, Amin N, ... ... Holmes AJ, et al. Novel genetic loci associated with hippocampal volume. Nature Communications. 8: 13624. PMID 28098162 DOI: 10.1038/ncomms13624  1
2016 Ge T, Reuter M, Winkler AM, Holmes AJ, Lee PH, Tirrell LS, Roffman JL, Buckner RL, Smoller JW, Sabuncu MR. Multidimensional heritability analysis of neuroanatomical shape. Nature Communications. 7: 13291. PMID 27845344 DOI: 10.1038/ncomms13291  1
2016 Adams HH, Hibar DP, Chouraki V, Stein JL, Nyquist PA, Rentería ME, Trompet S, Arias-Vasquez A, Seshadri S, Desrivières S, Beecham AH, Jahanshad N, Wittfeld K, Van der Lee SJ, Abramovic L, ... ... Holmes AJ, et al. Novel genetic loci underlying human intracranial volume identified through genome-wide association. Nature Neuroscience. PMID 27694991 DOI: 10.1038/nn.4398  1
2016 Sabuncu MR, Ge T, Holmes AJ, Smoller JW, Buckner RL, Fischl B. Morphometricity as a measure of the neuroanatomical signature of a trait. Proceedings of the National Academy of Sciences of the United States of America. PMID 27613854 DOI: 10.1073/pnas.1604378113  1
2016 Mormino EC, Sperling RA, Holmes AJ, Buckner RL, De Jager PL, Smoller JW, Sabuncu MR. Polygenic risk of Alzheimer disease is associated with early- and late-life processes. Neurology. PMID 27385740 DOI: 10.1212/WNL.0000000000002922  1
2016 Holmes AJ, Hollinshead MO, Roffman JL, Smoller JW, Buckner RL. Individual Differences in Cognitive Control Circuit Anatomy Link Sensation Seeking, Impulsivity, and Substance Use. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 36: 4038-49. PMID 27053210 DOI: 10.1523/JNEUROSCI.3206-15.2016  1
2016 Chekroud AM, Ward EJ, Rosenberg MD, Holmes AJ. Patterns in the human brain mosaic discriminate males from females. Proceedings of the National Academy of Sciences of the United States of America. PMID 26984491 DOI: 10.1073/pnas.1523888113  1
2015 Wang D, Buckner RL, Fox MD, Holt DJ, Holmes AJ, Stoecklein S, Langs G, Pan R, Qian T, Li K, Baker JT, Stufflebeam SM, Wang K, Wang X, Hong B, et al. Parcellating cortical functional networks in individuals. Nature Neuroscience. PMID 26551545 DOI: 10.1038/nn.4164  1
2015 Holmes AJ, Yeo BT. From phenotypic chaos to neurobiological order. Nature Neuroscience. 18: 1532-4. PMID 26505560 DOI: 10.1038/nn.4145  1
2015 Holmes AJ, Hollinshead MO, O'Keefe TM, Petrov VI, Fariello GR, Wald LL, Fischl B, Rosen BR, Mair RW, Roffman JL, Smoller JW, Buckner RL. Brain Genomics Superstruct Project initial data release with structural, functional, and behavioral measures. Scientific Data. 2: 150031. PMID 26175908 DOI: 10.1038/sdata.2015.31  1
2015 Ge T, Nichols TE, Lee PH, Holmes AJ, Roffman JL, Buckner RL, Sabuncu MR, Smoller JW. Massively expedited genome-wide heritability analysis (MEGHA). Proceedings of the National Academy of Sciences of the United States of America. 112: 2479-84. PMID 25675487 DOI: 10.1073/pnas.1415603112  1
2015 Hibar DP, Stein JL, Renteria ME, Arias-Vasquez A, Desrivières S, Jahanshad N, Toro R, Wittfeld K, Abramovic L, Andersson M, Aribisala BS, Armstrong NJ, Bernard M, Bohlken MM, Boks MP, ... ... Holmes AJ, et al. Common genetic variants influence human subcortical brain structures. Nature. 520: 224-9. PMID 25607358 DOI: 10.1038/nature14101  1
2015 Treadway MT, Waskom ML, Dillon DG, Holmes AJ, Park MT, Chakravarty MM, Dutra SJ, Polli FE, Iosifescu DV, Fava M, Gabrieli JD, Pizzagalli DA. Illness progression, recent stress, and morphometry of hippocampal subfields and medial prefrontal cortex in major depression. Biological Psychiatry. 77: 285-94. PMID 25109665 DOI: 10.1016/j.biopsych.2014.06.018  1
2015 Admon R, Nickerson LD, Dillon DG, Holmes AJ, Bogdan R, Kumar P, Dougherty DD, Iosifescu DV, Mischoulon D, Fava M, Pizzagalli DA. Dissociable cortico-striatal connectivity abnormalities in major depression in response to monetary gains and penalties. Psychological Medicine. 45: 121-31. PMID 25055809 DOI: 10.1017/S0033291714001123  1
2014 Pearson-Fuhrhop KM, Dunn EC, Mortero S, Devan WJ, Falcone GJ, Lee P, Holmes AJ, Hollinshead MO, Roffman JL, Smoller JW, Rosand J, Cramer SC. Dopamine genetic risk score predicts depressive symptoms in healthy adults and adults with depression. Plos One. 9: e93772. PMID 24834916 DOI: 10.1371/journal.pone.0093772  1
2014 Smoller JW, Gallagher PJ, Duncan LE, McGrath LM, Haddad SA, Holmes AJ, Wolf AB, Hilker S, Block SR, Weill S, Young S, Choi EY, Rosenbaum JF, Biederman J, Faraone SV, et al. The human ortholog of acid-sensing ion channel gene ASIC1a is associated with panic disorder and amygdala structure and function. Biological Psychiatry. 76: 902-10. PMID 24529281 DOI: 10.1016/j.biopsych.2013.12.018  1
2014 Thompson PM, Stein JL, Medland SE, Hibar DP, Vasquez AA, Renteria ME, Toro R, Jahanshad N, Schumann G, Franke B, Wright MJ, Martin NG, Agartz I, Alda M, Alhusaini S, ... ... Holmes AJ, et al. The ENIGMA Consortium: large-scale collaborative analyses of neuroimaging and genetic data. Brain Imaging and Behavior. 8: 153-82. PMID 24399358 DOI: 10.1007/s11682-013-9269-5  1
2014 Baker JT, Holmes AJ, Masters GA, Yeo BT, Krienen F, Buckner RL, Öngür D. Disruption of cortical association networks in schizophrenia and psychotic bipolar disorder. Jama Psychiatry. 71: 109-18. PMID 24306091 DOI: 10.1001/jamapsychiatry.2013.3469  1
2012 Holmes AJ, Lee PH, Hollinshead MO, Bakst L, Roffman JL, Smoller JW, Buckner RL. Individual differences in amygdala-medial prefrontal anatomy link negative affect, impaired social functioning, and polygenic depression risk. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 18087-100. PMID 23238724 DOI: 10.1523/JNEUROSCI.2531-12.2012  1
2012 Stein JL, Medland SE, Vasquez AA, Hibar DP, Senstad RE, Winkler AM, Toro R, Appel K, Bartecek R, Bergmann Ø, Bernard M, Brown AA, Cannon DM, Chakravarty MM, Christoforou A, ... ... Holmes AJ, et al. Identification of common variants associated with human hippocampal and intracranial volumes. Nature Genetics. 44: 552-61. PMID 22504417 DOI: 10.1038/ng.2250  1
2012 Santesso DL, Bogdan R, Birk JL, Goetz EL, Holmes AJ, Pizzagalli DA. Neural responses to negative feedback are related to negative emotionality in healthy adults. Social Cognitive and Affective Neuroscience. 7: 794-803. PMID 21917847 DOI: 10.1093/scan/nsr054  1
2010 Janes AC, Pizzagalli DA, Richardt S, Frederick Bde B, Holmes AJ, Sousa J, Fava M, Evins AE, Kaufman MJ. Neural substrates of attentional bias for smoking-related cues: an FMRI study. Neuropsychopharmacology : Official Publication of the American College of Neuropsychopharmacology. 35: 2339-45. PMID 20703221 DOI: 10.1038/npp.2010.103  1
2010 Holmes AJ, Pizzagalli DA. Effects of task-relevant incentives on the electrophysiological correlates of error processing in major depressive disorder. Cognitive, Affective & Behavioral Neuroscience. 10: 119-28. PMID 20233960 DOI: 10.3758/CABN.10.1.119  1
2010 Janes AC, Pizzagalli DA, Richardt S, deB Frederick B, Chuzi S, Pachas G, Culhane MA, Holmes AJ, Fava M, Evins AE, Kaufman MJ. Brain reactivity to smoking cues prior to smoking cessation predicts ability to maintain tobacco abstinence. Biological Psychiatry. 67: 722-9. PMID 20172508 DOI: 10.1016/j.biopsych.2009.12.034  1
2010 Holmes AJ, Bogdan R, Pizzagalli DA. Serotonin transporter genotype and action monitoring dysfunction: a possible substrate underlying increased vulnerability to depression. Neuropsychopharmacology : Official Publication of the American College of Neuropsychopharmacology. 35: 1186-97. PMID 20090673 DOI: 10.1038/npp.2009.223  1
2010 Dillon DG, Bogdan R, Fagerness J, Holmes AJ, Perlis RH, Pizzagalli DA. Variation in TREK1 gene linked to depression-resistant phenotype is associated with potentiated neural responses to rewards in humans. Human Brain Mapping. 31: 210-21. PMID 19621370 DOI: 10.1002/hbm.20858  1
2010 Petersen TJ, Pava JA, Buchin J, Matthews JD, Papakostas GI, Nierenberg AA, Holmes AJ, Bogdan R, Graves LM, Harley RM, Fava M. The role of cognitive-behavioral therapy and fluoxetine in prevention of recurrence of major depressive disorder Cognitive Therapy and Research. 34: 13-23. DOI: 10.1007/s10608-007-9166-6  1
2009 Pizzagalli DA, Holmes AJ, Dillon DG, Goetz EL, Birk JL, Bogdan R, Dougherty DD, Iosifescu DV, Rauch SL, Fava M. Reduced caudate and nucleus accumbens response to rewards in unmedicated individuals with major depressive disorder. The American Journal of Psychiatry. 166: 702-10. PMID 19411368 DOI: 10.1176/appi.ajp.2008.08081201  1
2009 Dillon DG, Holmes AJ, Birk JL, Brooks N, Lyons-Ruth K, Pizzagalli DA. Childhood adversity is associated with left basal ganglia dysfunction during reward anticipation in adulthood. Biological Psychiatry. 66: 206-13. PMID 19358974 DOI: 10.1016/j.biopsych.2009.02.019  1
2008 Meites TM, Deveney CM, Steele KT, Holmes AJ, Pizzagalli DA. Implicit depression and hopelessness in remitted depressed individuals. Behaviour Research and Therapy. 46: 1078-84. PMID 18692169 DOI: 10.1016/j.brat.2008.05.008  1
2008 Santesso DL, Dillon DG, Birk JL, Holmes AJ, Goetz E, Bogdan R, Pizzagalli DA. Individual differences in reinforcement learning: behavioral, electrophysiological, and neuroimaging correlates. Neuroimage. 42: 807-16. PMID 18595740 DOI: 10.1016/j.neuroimage.2008.05.032  1
2008 Santesso DL, Steele KT, Bogdan R, Holmes AJ, Deveney CM, Meites TM, Pizzagalli DA. Enhanced negative feedback responses in remitted depression. Neuroreport. 19: 1045-8. PMID 18580576 DOI: 10.1097/WNR.0b013e3283036e73  1
2008 Holmes AJ, Pizzagalli DA. Response conflict and frontocingulate dysfunction in unmedicated participants with major depression. Neuropsychologia. 46: 2904-13. PMID 18577391 DOI: 10.1016/j.neuropsychologia.2008.05.028  1
2008 Chiu PH, Holmes AJ, Pizzagalli DA. Dissociable recruitment of rostral anterior cingulate and inferior frontal cortex in emotional response inhibition. Neuroimage. 42: 988-97. PMID 18556218 DOI: 10.1016/j.neuroimage.2008.04.248  1
2008 Holmes AJ, Pizzagalli DA. Spatiotemporal dynamics of error processing dysfunctions in major depressive disorder. Archives of General Psychiatry. 65: 179-88. PMID 18250256 DOI: 10.1001/archgenpsychiatry.2007.19  1
2008 Dillon DG, Holmes AJ, Jahn AL, Bogdan R, Wald LL, Pizzagalli DA. Dissociation of neural regions associated with anticipatory versus consummatory phases of incentive processing. Psychophysiology. 45: 36-49. PMID 17850241 DOI: 10.1111/j.1469-8986.2007.00594.x  1
2007 Holmes AJ, Pizzagalli DA. Task feedback effects on conflict monitoring and executive control: relationship to subclinical measures of depression. Emotion (Washington, D.C.). 7: 68-76. PMID 17352564 DOI: 10.1037/1528-3542.7.1.68  1
2007 Peterson TJ, Feldman G, Harley R, Fresco DM, Graves L, Holmes A, Bogdan R, Papakostas GI, Bohn L, Lury RA, Fava M, Segal ZV. Extreme response style in recurrent and chronically depressed patients: change with antidepressant administration and stability during continuation treatment. Journal of Consulting and Clinical Psychology. 75: 145-53. PMID 17295573 DOI: 10.1037/0022-006X.75.1.145  1
2007 Penny WD, Holmes AJ. Random effects analysis Statistical Parametric Mapping: the Analysis of Functional Brain Images. 156-165. DOI: 10.1016/B978-012372560-8/50012-7  1
2005 Holmes AJ, MacDonald A, Carter CS, Barch DM, Andrew Stenger V, Cohen JD. Prefrontal functioning during context processing in schizophrenia and major depression: an event-related fMRI study. Schizophrenia Research. 76: 199-206. PMID 15949653 DOI: 10.1016/j.schres.2005.01.021  1
2005 MacDonald AW, Carter CS, Kerns JG, Ursu S, Barch DM, Holmes AJ, Stenger VA, Cohen JD. Specificity of prefrontal dysfunction and context processing deficits to schizophrenia in never-medicated patients with first-episode psychosis. The American Journal of Psychiatry. 162: 475-84. PMID 15741464 DOI: 10.1176/appi.ajp.162.3.475  1
2003 Penny W, Holmes A. Random-Effects Analysis Human Brain Function: Second Edition. 843-850. DOI: 10.1016/B978-012264841-0/50044-5  1
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