Jason L. Stein, Ph.D. - Publications

Affiliations: 
University of California, Los Angeles, Los Angeles, CA 
 2016- Genetics University of North Carolina at Chapel Hill School of Medicine 
Area:
neuroimaging, genetics, neurodevelopment
Website:
steinlab.org

259 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Krupa O, Fragola G, Hadden-Ford E, Mory JT, Liu T, Humphrey Z, Rees BW, Krishnamurthy A, Snider WD, Zylka MJ, Wu G, Xing L, Stein JL. NuMorph: Tools for cortical cellular phenotyping in tissue-cleared whole-brain images. Cell Reports. 37: 109802. PMID 34644582 DOI: 10.1016/j.celrep.2021.109802  1
2021 Aygün N, Elwell AL, Liang D, Lafferty MJ, Cheek KE, Courtney KP, Mory J, Hadden-Ford E, Krupa O, de la Torre-Ubieta L, Geschwind DH, Love MI, Stein JL. Brain-trait-associated variants impact cell-type-specific gene regulation during neurogenesis. American Journal of Human Genetics. PMID 34416157 DOI: 10.1016/j.ajhg.2021.07.011  1
2021 Zhao B, Li T, Yang Y, Wang X, Luo T, Shan Y, Zhu Z, Xiong D, Hauberg ME, Bendl J, Fullard JF, Roussos P, Li Y, Stein JL, Zhu H. Common genetic variation influencing human white matter microstructure. Science (New York, N.Y.). 372. PMID 34140357 DOI: 10.1126/science.abf3736  1
2021 Borland D, McCormick CM, Patel NK, Krupa O, Mory JT, Beltran AA, Farah TM, Escobar-Tomlienovich CF, Olson SS, Kim M, Wu G, Stein JL. Segmentor: a tool for manual refinement of 3D microscopy annotations. Bmc Bioinformatics. 22: 260. PMID 34022787 DOI: 10.1186/s12859-021-04202-8  1
2021 Liang D, Elwell AL, Aygün N, Krupa O, Wolter JM, Kyere FA, Lafferty MJ, Cheek KE, Courtney KP, Yusupova M, Garrett ME, Ashley-Koch A, Crawford GE, Love MI, de la Torre-Ubieta L, ... ... Stein JL, et al. Cell-type-specific effects of genetic variation on chromatin accessibility during human neuronal differentiation. Nature Neuroscience. PMID 34017130 DOI: 10.1038/s41593-021-00858-w  1
2021 Matoba N, Stein JL. From base pair to brain. Nature Neuroscience. 24: 619-621. PMID 33875895 DOI: 10.1038/s41593-021-00852-2  1
2021 Zhu A, Matoba N, Wilson EP, Tapia AL, Li Y, Ibrahim JG, Stein JL, Love MI. MRLocus: Identifying causal genes mediating a trait through Bayesian estimation of allelic heterogeneity. Plos Genetics. 17: e1009455. PMID 33872308 DOI: 10.1371/journal.pgen.1009455  1
2020 Medland SE, Grasby KL, Jahanshad N, Painter JN, Colodro-Conde L, Bralten J, Hibar DP, Lind PA, Pizzagalli F, Thomopoulos SI, Stein JL, Franke B, Martin NG, Thompson PM. Ten years of enhancing neuro-imaging genetics through meta-analysis: An overview from the ENIGMA Genetics Working Group. Human Brain Mapping. PMID 33300665 DOI: 10.1002/hbm.25311  1
2020 Tilot AK, Khramtsova EA, Liang D, Grasby KL, Jahanshad N, Painter J, Colodro-Conde L, Bralten J, Hibar DP, Lind PA, Liu S, Brotman SM, Thompson PM, Medland SE, Macciardi F, ... ... Stein JL, et al. The Evolutionary History of Common Genetic Variants Influencing Human Cortical Surface Area. Cerebral Cortex (New York, N.Y. : 1991). PMID 33290510 DOI: 10.1093/cercor/bhaa327  1
2020 Matoba N, Love MI, Stein JL. Evaluating brain structure traits as endophenotypes using polygenicity and discoverability. Human Brain Mapping. PMID 33098356 DOI: 10.1002/hbm.25257  1
2020 Wolter JM, Mao H, Fragola G, Simon JM, Krantz JL, Bazick HO, Oztemiz B, Stein JL, Zylka MJ. Cas9 gene therapy for Angelman syndrome traps Ube3a-ATS long non-coding RNA. Nature. PMID 33087932 DOI: 10.1038/s41586-020-2835-2  0.01
2020 Hofer E, Roshchupkin GV, Adams HHH, Knol MJ, Lin H, Li S, Zare H, Ahmad S, Armstrong NJ, Satizabal CL, Bernard M, Bis JC, Gillespie NA, Luciano M, Mishra A, ... ... Stein JL, et al. Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults. Nature Communications. 11: 4796. PMID 32963231 DOI: 10.1038/s41467-020-18367-y  1
2020 Matoba N, Liang D, Sun H, Aygün N, McAfee JC, Davis JE, Raffield LM, Qian H, Piven J, Li Y, Kosuri S, Won H, Stein JL. Common genetic risk variants identified in the SPARK cohort support DDHD2 as a candidate risk gene for autism. Translational Psychiatry. 10: 265. PMID 32747698 DOI: 10.1038/S41398-020-00953-9  1
2020 Walker RL, Ramaswami G, Hartl C, Mancuso N, Gandal MJ, de la Torre-Ubieta L, Pasaniuc B, Stein JL, Geschwind DH. Genetic Control of Expression and Splicing in Developing Human Brain Informs Disease Mechanisms. Cell. 181: 745. PMID 32359439 DOI: 10.1016/j.cell.2020.04.016  1
2020 Walker RL, Ramaswami G, Hartl C, Mancuso N, Gandal MJ, Torre-Ubieta L, Pasaniuc B, Stein JL, Geschwind DH. Genetic Control of Expression and Splicing in Developing Human Brain Informs Disease Mechanisms. Cell. 181: 484. PMID 32302575 DOI: 10.1016/j.cell.2020.04.003  1
2020 Thompson PM, Jahanshad N, Ching CRK, Salminen LE, Thomopoulos SI, Bright J, Baune BT, Bertolín S, Bralten J, Bruin WB, Bülow R, Chen J, Chye Y, Dannlowski U, de Kovel CGF, ... ... Stein JL, et al. ENIGMA and global neuroscience: A decade of large-scale studies of the brain in health and disease across more than 40 countries. Translational Psychiatry. 10: 100. PMID 32198361 DOI: 10.1038/S41398-020-0705-1  1
2020 Grasby KL, Jahanshad N, Painter JN, Colodro-Conde L, Bralten J, Hibar DP, Lind PA, Pizzagalli F, Ching CRK, McMahon MAB, Shatokhina N, Zsembik LCP, Thomopoulos SI, Zhu AH, Strike LT, ... ... Stein JL, et al. The genetic architecture of the human cerebral cortex. Science (New York, N.Y.). 367. PMID 32193296 DOI: 10.1126/Science.Aay6690  1
2019 Guo Y, Wang Q, Krupa O, Stein J, Wu G, Bradford K, Krishnamurthy A. Cross Modality Microscopy Segmentation via Adversarial Adaptation. Bioinformatics and Biomedical Engineering : 7th International Work-Conference, Iwbbio 2019, Granada, Spain, May 8-10, 2019, Proceedings, Parts I and Ii. Iwbbio (Conference) (7th : 2019 : Granada, Spain). 11466: 469-478. PMID 32154516 DOI: 10.1007/978-3-030-17935-9_42  1
2019 Satizabal CL, Adams HHH, Hibar DP, White CC, Knol MJ, Stein JL, Scholz M, Sargurupremraj M, Jahanshad N, Roshchupkin GV, Smith AV, Bis JC, Jian X, Luciano M, Hofer E, et al. Genetic architecture of subcortical brain structures in 38,851 individuals. Nature Genetics. PMID 31636452 DOI: 10.1038/S41588-019-0511-Y  0.88
2019 Walker RL, Ramaswami G, Hartl C, Mancuso N, Gandal MJ, de la Torre-Ubieta L, Pasaniuc B, Stein JL, Geschwind DH. Genetic Control of Expression and Splicing in Developing Human Brain Informs Disease Mechanisms. Cell. 179: 750-771.e22. PMID 31626773 DOI: 10.1016/J.Cell.2019.09.021  1
2019 Mixon AS, Kripalani S, Stein J, Wetterneck TB, Kaboli P, Mueller S, Burdick E, Nolido NV, Labonville S, Minahan JA, Orav EJ, Goldstein J, Schnipper JL. An On-Treatment Analysis of the MARQUIS Study: Interventions to Improve Inpatient Medication Reconciliation. Journal of Hospital Medicine. 14. PMID 31433768 DOI: 10.12788/Jhm.3308  1
2019 Polioudakis D, de la Torre-Ubieta L, Langerman J, Elkins AG, Shi X, Stein JL, Vuong CK, Nichterwitz S, Gevorgian M, Opland CK, Lu D, Connell W, Ruzzo EK, Lowe JK, Hadzic T, et al. A Single-Cell Transcriptomic Atlas of Human Neocortical Development during Mid-gestation. Neuron. PMID 31303374 DOI: 10.1016/J.Neuron.2019.06.011  1
2019 Nakagawa N, Plestant C, Yabuno-Nakagawa K, Li J, Lee J, Huang CW, Lee A, Krupa O, Adhikari A, Thompson S, Rhynes T, Arevalo V, Stein JL, Molnár Z, Badache A, et al. Memo1-Mediated Tiling of Radial Glial Cells Facilitates Cerebral Cortical Development. Neuron. PMID 31277925 DOI: 10.1016/J.Neuron.2019.05.049  1
2019 Le BD, Stein JL. Mapping causal pathways from genetics to neuropsychiatric disorders using genome-wide imaging genetics: current status and future directions. Psychiatry and Clinical Neurosciences. PMID 30864184 DOI: 10.1111/Pcn.12839  0.01
2019 Klein M, Walters RK, Demontis D, Stein JL, Hibar DP, Adams HH, Bralten J, Roth Mota N, Schachar R, Sonuga-Barke E, Mattheisen M, Neale BM, Thompson PM, Medland SE, Børglum AD, et al. Genetic Markers of ADHD-Related Variations in Intracranial Volume. The American Journal of Psychiatry. 176: 228-238. PMID 30818988 DOI: 10.1176/Appi.Ajp.2018.18020149  1
2019 Skinner K, Ferris M, Bash R, Shelton A, Smithberger E, Angus S, Golitz B, Sciaky N, Simon J, Stein J, Matsushima G, Ostrom Q, Stetson L, Barnholtz-Sloan J, Dhruv H, et al. Abstract 2745: Tumor microenvironment and host genetics impact glioma progression in a Collaborative Cross-based orthotopic allograft model Cancer Research. DOI: 10.1158/1538-7445.Sabcs18-2745  0.01
2019 Liang D, Elwell AL, Krupa O, Cheek KE, Courtney KP, Love MI, de la Torre-Ubieta L, Geschwind DH, Stein JL. 28 GENETIC VARIANTS AFFECTING CHROMATIN ACCESSIBILITY DURING HUMAN NEURONAL DIFFERENTIATION European Neuropsychopharmacology. 29: S74-S75. DOI: 10.1016/J.Euroneuro.2019.07.169  0.08
2019 Krupa O, Liang D, Won H, Love M, Stein J. 27 GENETIC REGULATION OF FOXO3 EXPRESSION INFLUENCES HUMAN NEUROGENESIS AND IS ASSOCIATED WITH CORTICAL SURFACE AREA AND INTELLIGENCE European Neuropsychopharmacology. 29: S74. DOI: 10.1016/J.Euroneuro.2019.07.168  0.01
2019 Klein M, Walters R, Stein J, Adams H, Børglum A, Faraone S, Thompson P, Medland S, Arias-Vásquez A, Franke B. Genetic Factors For Adhd Risk Overlap With Those Influencing Intracranial Volume European Neuropsychopharmacology. 29. DOI: 10.1016/J.Euroneuro.2017.06.133  1
2018 Schnipper JL, Mixon A, Stein J, Wetterneck TB, Kaboli PJ, Mueller S, Labonville S, Minahan JA, Burdick E, Orav EJ, Goldstein J, Nolido NV, Kripalani S. Effects of a multifaceted medication reconciliation quality improvement intervention on patient safety: final results of the MARQUIS study. Bmj Quality & Safety. PMID 30126891 DOI: 10.1136/Bmjqs-2018-008233  1
2018 Stein J, Shapiro S. Annals for Hospitalists Inpatient Notes - Modernizing Rounds-Why It's Time to Redesign Our Hospital Practice. Annals of Internal Medicine. 168: HO2-HO3. PMID 29335736 DOI: 10.7326/M17-3334  0.01
2018 de la Torre-Ubieta L, Stein JL, Won H, Opland CK, Liang D, Lu D, Geschwind DH. The Dynamic Landscape of Open Chromatin during Human Cortical Neurogenesis. Cell. PMID 29307494 DOI: 10.1016/J.Cell.2017.12.014  1
2018 Skinner K, Ferris M, Bash R, Shelton A, Smithberger E, Angus S, Golitz B, Sciacky N, Simon J, Stein J, Matsushima G, Ostrom Q, Stetson L, Barnholtz-Sloan J, Dhruv H, et al. TMIC-25. DISSECTING THE ROLE OF HOST GENETICS IN GLIOMA EVOLUTION USING GENETICALLY-ENGINEERED MOUSE MODELS AND THE COLLABORATIVE CROSS Neuro-Oncology. 20: vi261-vi261. DOI: 10.1093/Neuonc/Noy148.1084  0.01
2017 Floruta CM, Du R, Kang H, Stein JL, Weick JP. Default Patterning Produces Pan-cortical Glutamatergic and CGE/LGE-like GABAergic Neurons from Human Pluripotent Stem Cells. Stem Cell Reports. PMID 29107596 DOI: 10.1016/J.Stemcr.2017.09.023  0.01
2017 Hibar DP, Adams HH, Jahanshad N, Chauhan G, Stein JL, Hofer E, Renteria ME, Bis JC, Arias-Vasquez A, Ikram MK, Desrivières S, Vernooij MW, Abramovic L, Alhusaini S, Amin N, et al. Novel genetic loci associated with hippocampal volume. Nature Communications. 8: 13624. PMID 28098162 DOI: 10.1038/Ncomms13624  0.88
2017 Klein M, Stein JL, Børglum A, Faraone SV, Thompson PM, Medland SE, Arias-Vasquez A, Franke B. 100. Investigating the Overlap between Common Genetic Factors for ADHD Risk and Brain Volume Measures Biological Psychiatry. 81: S42. DOI: 10.1016/J.Biopsych.2017.02.112  0.01
2016 Won H, de la Torre-Ubieta L, Stein JL, Parikshak NN, Huang J, Opland CK, Gandal MJ, Sutton GJ, Hormozdiari F, Lu D, Lee C, Eskin E, Voineagu I, Ernst J, Geschwind DH. Chromosome conformation elucidates regulatory relationships in developing human brain. Nature. PMID 27760116 DOI: 10.1038/Nature19847  1
2016 Adams HH, Hibar DP, Chouraki V, Stein JL, Nyquist PA, Rentería ME, Trompet S, Arias-Vasquez A, Seshadri S, Desrivières S, Beecham AH, Jahanshad N, Wittfeld K, Van der Lee SJ, Abramovic L, et al. Novel genetic loci underlying human intracranial volume identified through genome-wide association. Nature Neuroscience. PMID 27694991 DOI: 10.1038/Nn.4398  0.88
2016 Chiocchetti AG, Haslinger D, Stein JL, de la Torre-Ubieta L, Cocchi E, Rothämel T, Lindlar S, Waltes R, Fulda S, Geschwind DH, Freitag CM. Transcriptomic signatures of neuronal differentiation and their association with risk genes for autism spectrum and related neuropsychiatric disorders. Translational Psychiatry. 6: e864. PMID 27483382 DOI: 10.1038/Tp.2016.119  1
2016 Bagot RC, Cates HM, Purushothaman I, Lorsch ZS, Walker DM, Wang J, Huang X, Schlüter OM, Maze I, Peña CJ, Heller EA, Issler O, Wang M, Song WM, Stein JL, et al. Circuit-wide Transcriptional Profiling Reveals Brain Region-Specific Gene Networks Regulating Depression Susceptibility. Neuron. PMID 27181059 DOI: 10.1016/J.Neuron.2016.04.015  1
2016 de la Torre-Ubieta L, Won H, Stein JL, Geschwind DH. Advancing the understanding of autism disease mechanisms through genetics. Nature Medicine. 22: 345-361. PMID 27050589 DOI: 10.1038/Nm.4071  1
2016 Messier TL, Boyd JR, Gordon JA, Stein JL, Lian JB, Stein GS. Oncofetal Epigenetic Bivalency in Breast Cancer Cells: H3K4 and H3K27 Methylation as a Biomarker for Phenotypic Plasticity(†). Journal of Cellular Physiology. PMID 26916849 DOI: 10.1002/Jcp.25359  1
2016 Becker M, Guadalupe T, Franke B, Hibar DP, Renteria ME, Stein JL, Thompson PM, Francks C, Vernes SC, Fisher SE. Early developmental gene enhancers affect subcortical volumes in the adult human brain. Human Brain Mapping. PMID 26890892 DOI: 10.1002/Hbm.23136  1
2016 Franke B, Stein JL, Ripke S, Anttila V, Hibar DP, van Hulzen KJ, Arias-Vasquez A, Smoller JW, Nichols TE, Neale MC, McIntosh AM, Lee P, McMahon FJ, Meyer-Lindenberg A, Mattheisen M, et al. Genetic influences on schizophrenia and subcortical brain volumes: large-scale proof of concept. Nature Neuroscience. PMID 26854805 DOI: 10.1038/Nn.4228  1
2016 Messier TL, Gordon JA, Boyd JR, Tye CE, Browne G, Stein JL, Lian JB, Stein GS. Histone H3 lysine 4 acetylation and methylation dynamics define breast cancer subtypes. Oncotarget. PMID 26783963 DOI: 10.18632/Oncotarget.6922  1
2016 Browne G, Dragon JA, Hong D, Messier TL, Gordon JA, Farina NH, Boyd JR, VanOudenhove JJ, Perez AW, Zaidi SK, Stein JL, Stein GS, Lian JB. MicroRNA-378-mediated suppression of Runx1 alleviates the aggressive phenotype of triple-negative MDA-MB-231 human breast cancer cells. Tumour Biology : the Journal of the International Society For Oncodevelopmental Biology and Medicine. PMID 26749280 DOI: 10.1007/S13277-015-4710-6  1
2016 Thompson PM, Hibar DP, Stein JL, Jahanshad N. Imaging Genomics and ENIGMA Genomics, Circuits, and Pathways in Clinical Neuropsychiatry. 101-115. DOI: 10.1016/B978-0-12-800105-9.00007-X  1
2015 Thompson PM, Andreassen OA, Arias-Vasquez A, Bearden CE, Boedhoe PS, Brouwer RM, Buckner RL, Buitelaar JK, Bulaeva KB, Cannon DM, Cohen RA, Conrod PJ, Dale AM, Deary IJ, Dennis EL, ... ... Stein JL, et al. ENIGMA and the Individual: Predicting Factors that Affect the Brain in 35 Countries Worldwide. Neuroimage. PMID 26658930 DOI: 10.1016/J.Neuroimage.2015.11.057  1
2015 Grandy RA, Whitfield TW, Wu H, Fitzgerald MP, VanOudenhove JJ, Zaidi SK, Montecino MA, Lian JB, vanWijnen AJ, Stein JL, Stein GS. Genome-wide Studies Reveal that H3K4me3 Modification in Bivalent Genes is Dynamically Regulated During the Pluripotent Cell Cycle and Stabilized Upon Differentiation. Molecular and Cellular Biology. PMID 26644406 DOI: 10.1128/Mcb.00877-15  1
2015 Berg JM, Lee C, Chen L, Galvan L, Cepeda C, Chen JY, Peñagarikano O, Stein JL, Li A, Oguro-Ando A, Miller JA, Vashisht AA, Starks ME, Kite EP, Tam E, et al. JAKMIP1, a Novel Regulator of Neuronal Translation, Modulates Synaptic Function and Autistic-like Behaviors in Mouse. Neuron. PMID 26627310 DOI: 10.1016/J.Neuron.2015.10.031  1
2015 Rojas A, Aguilar R, Henriquez B, Lian JB, Stein JL, Stein GS, van Wijnen AJ, van Zundert B, Allende ML, Montecino M. Epigenetic Control of the Bone-master Runx2 Gene During Osteoblast-lineage Commitment by the Histone Demethylase JARID1B/KDM5B. The Journal of Biological Chemistry. PMID 26453309 DOI: 10.1074/Jbc.M115.657825  1
2015 Barutcu AR, Lajoie BR, McCord RP, Tye CE, Hong D, Messier TL, Browne G, van Wijnen AJ, Lian JB, Stein JL, Dekker J, Imbalzano AN, Stein GS. Chromatin interaction analysis reveals changes in small chromosome and telomere clustering between epithelial and breast cancer cells. Genome Biology. 16: 214. PMID 26415882 DOI: 10.1186/S13059-015-0768-0  1
2015 Lim KE, Park NR, Che X, Han MS, Jeong JH, Kim SY, Park CY, Akiyama H, Kim JE, Ryoo HM, Stein JL, Lian JB, Stein GS, Choi JY. Core Binding Factor β of Osteoblasts Maintains Cortical Bone Mass Via Stabilization of Runx2 in Mice. Journal of Bone and Mineral Research : the Official Journal of the American Society For Bone and Mineral Research. 30: 1943. PMID 26390980 DOI: 10.1002/jbmr.2578  1
2015 Fritz A, Barutcu AR, Martin-Buley L, van Wijnen AJ, Zaidi SK, Imbalzano AN, Lian JB, Stein JL, Stein GS. Chromosomes at Work: Organization of Chromosome Territories in the Interphase Nucleus. Journal of Cellular Biochemistry. PMID 26192137 DOI: 10.1002/Jcb.25280  1
2015 Barutcu AR, Fritz AJ, Zaidi SK, vanWijnen AJ, Lian JB, Stein JL, Nickerson JA, Imbalzano AN, Stein GS. C-ing the Genome: A Compendium of Chromosome Conformation Capture Methods to Study Higher-Order Chromatin Organization. Journal of Cellular Physiology. PMID 26059817 DOI: 10.1002/Jcp.25062  1
2015 Ghule PN, Xie RL, Colby JL, Jones SN, Lian JB, van Wijnen AJ, Stein JL, Stein GS. p53 checkpoint ablation exacerbates the phenotype of Hinfp dependent histone H4 deficiency. Cell Cycle (Georgetown, Tex.). 1-8. PMID 26030398 DOI: 10.1080/15384101.2015.1049783  1
2015 Trombly DJ, Whitfield TW, Padmanabhan S, Gordon JA, Lian JB, van Wijnen AJ, Zaidi SK, Stein JL, Stein GS. Genome-wide co-occupancy of AML1-ETO and N-CoR defines the t(8;21) AML signature in leukemic cells. Bmc Genomics. 16: 309. PMID 25928846 DOI: 10.1186/S12864-015-1445-0  1
2015 Gordon JA, Stein JL, Westendorf JJ, van Wijnen AJ. Chromatin modifiers and histone modifications in bone formation, regeneration, and therapeutic intervention for bone-related disease. Bone. PMID 25836763 DOI: 10.1016/j.bone.2015.03.011  1
2015 Wu Q, Madany P, Akech J, Dobson JR, Douthwright S, Browne G, Colby JL, Winter GE, Bradner JE, Pratap J, Sluder G, Bhargava R, Chiosea S, van Wijnen AJ, Stein JL, et al. The SWI/SNF ATPases are Required for Triple Negative Breast Cancer Cell Proliferation. Journal of Cellular Physiology. PMID 25808524 DOI: 10.1002/Jcp.24991  1
2015 Scott RE, Ghule PN, Stein JL, Stein GS. Cell cycle gene expression networks discovered using systems biology: Significance in carcinogenesis. Journal of Cellular Physiology. 230: 2533-42. PMID 25808367 DOI: 10.1002/Jcp.24990  1
2015 Browne G, Taipaleenmäki H, Bishop NM, Madasu SC, Shaw LM, van Wijnen AJ, Stein JL, Stein GS, Lian JB. Runx1 is associated with breast cancer progression in MMTV-PyMT transgenic mice and its depletion in vitro inhibits migration and invasion. Journal of Cellular Physiology. 230: 2522-32. PMID 25802202 DOI: 10.1002/Jcp.24989  1
2015 Martinez RA, Stein JL, Krostag AR, Nelson AM, Marken JS, Menon V, May RC, Yao Z, Kaykas A, Geschwind DH, Grimley JS. Genome engineering of isogenic human ES cells to model autism disorders. Nucleic Acids Research. 43: e65. PMID 25765640 DOI: 10.1093/Nar/Gkv164  1
2015 Smith I, Silveirinha V, Stein JL, de la Torre-Ubieta L, Farrimond JA, Williamson EM, Whalley BJ. Human neural stem cell-derived cultures in three-dimensional substrates form spontaneously functional neuronal networks. Journal of Tissue Engineering and Regenerative Medicine. PMID 25712225 DOI: 10.1002/Term.2001  1
2015 Stein JL. Copy number variation and brain structure: lessons learned from chromosome 16p11.2. Genome Medicine. 7: 13. PMID 25688292 DOI: 10.1186/S13073-015-0140-8  1
2015 Taipaleenmäki H, Browne G, Akech J, Zustin J, van Wijnen AJ, Stein JL, Hesse E, Stein GS, Lian JB. Targeting of Runx2 by miR-135 and miR-203 Impairs Progression of Breast Cancer and Metastatic Bone Disease. Cancer Research. 75: 1433-44. PMID 25634212 DOI: 10.1158/0008-5472.Can-14-1026  1
2015 Yang S, Quaresma AJ, Nickerson JA, Green KM, Shaffer SA, Imbalzano AN, Martin-Buley LA, Lian JB, Stein JL, van Wijnen AJ, Stein GS. Subnuclear domain proteins in cancer cells support the functions of RUNX2 in the DNA damage response. Journal of Cell Science. 128: 728-40. PMID 25609707 DOI: 10.1242/Jcs.160051  1
2015 Hibar DP, Stein JL, Renteria ME, Arias-Vasquez A, Desrivières S, Jahanshad N, Toro R, Wittfeld K, Abramovic L, Andersson M, Aribisala BS, Armstrong NJ, Bernard M, Bohlken MM, Boks MP, et al. Common genetic variants influence human subcortical brain structures. Nature. 520: 224-9. PMID 25607358 DOI: 10.1038/Nature14101  1
2015 Stein J, Payne C, Methvin A, Bonsall JM, Chadwick L, Clark D, Castle BW, Tong D, Dressler DD. Reorganizing a hospital ward as an accountable care unit. Journal of Hospital Medicine. 10: 36-40. PMID 25399928 DOI: 10.1002/Jhm.2284  1
2015 Lim KE, Park NR, Che X, Han MS, Jeong JH, Kim SY, Park CY, Akiyama H, Kim JE, Ryoo HM, Stein JL, Lian JB, Stein GS, Choi JY. Core binding factor β of osteoblasts maintains cortical bone mass via stabilization of Runx2 in mice. Journal of Bone and Mineral Research : the Official Journal of the American Society For Bone and Mineral Research. 30: 715-22. PMID 25358268 DOI: 10.1002/Jbmr.2397  1
2015 Hibar DP, Stein JL, Jahanshad N, Kohannim O, Hua X, Toga AW, McMahon KL, de Zubicaray GI, Martin NG, Wright MJ, Weiner MW, Thompson PM. Genome-wide interaction analysis reveals replicated epistatic effects on brain structure. Neurobiology of Aging. 36: S151-8. PMID 25264344 DOI: 10.1016/J.Neurobiolaging.2014.02.033  1
2015 Tye CE, Gordon JA, Martin-Buley LA, Stein JL, Lian JB, Stein GS. Could lncRNAs be the missing links in control of mesenchymal stem cell differentiation? Journal of Cellular Physiology. 230: 526-34. PMID 25258250 DOI: 10.1002/Jcp.24834  1
2015 Zhang X, Akech J, Browne G, Russell S, Wixted JJ, Stein JL, Stein GS, Lian JB. Runx2-Smad signaling impacts the progression of tumor-induced bone disease. International Journal of Cancer. Journal International Du Cancer. 136: 1321-32. PMID 25053011 DOI: 10.1002/Ijc.29094  1
2015 Kapinas K, Kim H, Mandeville M, Martin-Buley LA, Croce CM, Lian JB, van Wijnen AJ, Stein JL, Altieri DC, Stein GS. microRNA-mediated survivin control of pluripotency. Journal of Cellular Physiology. 230: 63-70. PMID 24891298 DOI: 10.1002/Jcp.24681  1
2015 Ge X, Brudnak MJ, Jayakumar P, Stein JL, Ersal T. A model-free predictor framework for tele-operated vehicles Proceedings of the American Control Conference. 2015: 4573-4578. DOI: 10.1109/ACC.2015.7172049  1
2015 Zhou X, Ersal T, Stein JL, Bernstein DS. A subsystem identification technique towards battery state of health monitoring under state of charge estimation errors Proceedings of the American Control Conference. 2015: 1812-1817. DOI: 10.1109/ACC.2015.7170996  1
2015 Kelly JC, Ersal T, Li CT, Marshall BM, Kundu S, Keoleian GA, Peng H, Hiskens IA, Stein JL. Sustainability, resiliency, and grid stability of the coupled electricity and transportation infrastructures: Case for an integrated analysis Journal of Infrastructure Systems. 21. DOI: 10.1061/(Asce)Is.1943-555X.0000251  1
2015 Ge X, Zheng Y, Brudnak MJ, Jayakumar P, Stein JL, Ersal T. Performance analysis of a model-free predictor for delay compensation in networked systems Ifac Proceedings Volumes (Ifac-Papersonline). 48: 434-439. DOI: 10.1016/j.ifacol.2015.09.417  1
2015 Lim KE, Park NR, Che X, Han MS, Jeong JH, Kim SY, Park CY, Akiyama H, Kim JE, Ryoo HM, Stein JL, Lian JB, Stein GS, Choi JY. Core Binding Factor β of Osteoblasts Maintains Cortical Bone Mass via Stabilization of Runx2 in Mice Journal of Bone and Mineral Research. DOI: 10.1002/jbmr.2587  1
2014 Ashbrook DG, Williams RW, Lu L, Stein JL, Hibar DP, Nichols TE, Medland SE, Thompson PM, Hager R. Joint genetic analysis of hippocampal size in mouse and human identifies a novel gene linked to neurodegenerative disease. Bmc Genomics. 15: 850. PMID 25280473 DOI: 10.1186/1471-2164-15-850  1
2014 Gordon JA, Montecino MA, Aqeilan RI, Stein JL, Stein GS, Lian JB. Epigenetic pathways regulating bone homeostasis: potential targeting for intervention of skeletal disorders. Current Osteoporosis Reports. 12: 496-506. PMID 25260661 DOI: 10.1007/S11914-014-0240-1  1
2014 Dobson JR, Taipaleenmäki H, Hu YJ, Hong D, van Wijnen AJ, Stein JL, Stein GS, Lian JB, Pratap J. hsa-mir-30c promotes the invasive phenotype of metastatic breast cancer cells by targeting NOV/CCN3. Cancer Cell International. 14: 73. PMID 25120384 DOI: 10.1186/S12935-014-0073-0  1
2014 Barutcu AR, Tai PW, Wu H, Gordon JA, Whitfield TW, Dobson JR, Imbalzano AN, Lian JB, van Wijnen AJ, Stein JL, Stein GS. The bone-specific Runx2-P1 promoter displays conserved three-dimensional chromatin structure with the syntenic Supt3h promoter. Nucleic Acids Research. 42: 10360-72. PMID 25120271 DOI: 10.1093/Nar/Gku712  1
2014 Lopez-Camacho C, van Wijnen AJ, Lian JB, Stein JL, Stein GS. CBFβ and the leukemogenic fusion protein CBFβ-SMMHC associate with mitotic chromosomes to epigenetically regulate ribosomal genes. Journal of Cellular Biochemistry. 115: 2155-64. PMID 25079347 DOI: 10.1002/Jcb.24892  1
2014 LeBlanc KT, Walcott ME, Gaur T, O'Connell SL, Basil K, Tadiri CP, Mason-Savas A, Silva JA, van Wijnen AJ, Stein JL, Stein GS, Ayers DC, Lian JB, Fanning PJ. Runx1 Activities in Superficial Zone Chondrocytes, Osteoarthritic Chondrocyte Clones and Response to Mechanical Loading. Journal of Cellular Physiology. PMID 25078095 DOI: 10.1002/Jcp.24727  1
2014 Stein JL, de la Torre-Ubieta L, Tian Y, Parikshak NN, Hernández IA, Marchetto MC, Baker DK, Lu D, Hinman CR, Lowe JK, Wexler EM, Muotri AR, Gage FH, Kosik KS, Geschwind DH. A quantitative framework to evaluate modeling of cortical development by neural stem cells. Neuron. 83: 69-86. PMID 24991955 DOI: 10.1016/J.Neuron.2014.05.035  1
2014 Rein JL, Etra AM, Patel JJ, Stein JL, Rivers AL, Gershengorn HB, Awerbuch E, Kreiswirth BN, Koshy SC. Death of woman with peripartum influenza B virus infection and necrotizing pneumonia. Emerging Infectious Diseases. 20: 1258-60. PMID 24960253 DOI: 10.3201/Eid2007.140230  1
2014 Dudakovic A, Camilleri E, Riester SM, Lewallen EA, Kvasha S, Chen X, Radel DJ, Anderson JM, Nair AA, Evans JM, Krych AJ, Smith J, Deyle DR, Stein JL, Stein GS, et al. High-resolution molecular validation of self-renewal and spontaneous differentiation in clinical-grade adipose-tissue derived human mesenchymal stem cells. Journal of Cellular Biochemistry. 115: 1816-28. PMID 24905804 DOI: 10.1002/Jcb.24852  1
2014 Stumpff J, Ghule PN, Shimamura A, Stein JL, Greenblatt M. Spindle microtubule dysfunction and cancer predisposition. Journal of Cellular Physiology. 229: 1881-3. PMID 24905602 DOI: 10.1002/jcp.24691  1
2014 Tai PW, Wu H, Gordon JA, Whitfield TW, Barutcu AR, van Wijnen AJ, Lian JB, Stein GS, Stein JL. Epigenetic landscape during osteoblastogenesis defines a differentiation-dependent Runx2 promoter region. Gene. 550: 1-9. PMID 24881813 DOI: 10.1016/J.Gene.2014.05.044  1
2014 Browne G, Taipaleenmäki H, Stein GS, Stein JL, Lian JB. MicroRNAs in the control of metastatic bone disease. Trends in Endocrinology and Metabolism: Tem. 25: 320-7. PMID 24811921 DOI: 10.1016/J.Tem.2014.03.014  1
2014 Kim CS, King E, Stein J, Robinson E, Salameh M, O'Leary KJ. Unit-based interprofessional leadership models in six US hospitals. Journal of Hospital Medicine. 9: 545-50. PMID 24799385 DOI: 10.1002/Jhm.2200  1
2014 Ghule PN, Xie RL, Medina R, Colby JL, Jones SN, Lian JB, Stein JL, van Wijnen AJ, Stein GS. Fidelity of histone gene regulation is obligatory for genome replication and stability. Molecular and Cellular Biology. 34: 2650-9. PMID 24797072 DOI: 10.1128/Mcb.01567-13  1
2014 Wu H, Whitfield TW, Gordon JA, Dobson JR, Tai PW, van Wijnen AJ, Stein JL, Stein GS, Lian JB. Genomic occupancy of Runx2 with global expression profiling identifies a novel dimension to control of osteoblastogenesis. Genome Biology. 15: R52. PMID 24655370 DOI: 10.1186/Gb-2014-15-3-R52  1
2014 Lopez-Camacho C, van Wijnen AJ, Lian JB, Stein JL, Stein GS. Core binding factor β (CBFβ) is retained in the midbody during cytokinesis. Journal of Cellular Physiology. 229: 1466-74. PMID 24648201 DOI: 10.1002/Jcp.24588  1
2014 Aguilar R, Grandy R, Meza D, Sepulveda H, Pihan P, van Wijnen AJ, Lian JB, Stein GS, Stein JL, Montecino M. A functional N-terminal domain in C/EBPβ-LAP* is required for interacting with SWI/SNF and to repress Ric-8B gene transcription in osteoblasts. Journal of Cellular Physiology. 229: 1521-8. PMID 24585571 DOI: 10.1002/Jcp.24595  1
2014 Zaidi SK, Grandy RA, Lopez-Camacho C, Montecino M, van Wijnen AJ, Lian JB, Stein JL, Stein GS. Bookmarking target genes in mitosis: a shared epigenetic trait of phenotypic transcription factors and oncogenes? Cancer Research. 74: 420-5. PMID 24408924 DOI: 10.1158/0008-5472.Can-13-2837  1
2014 Thompson PM, Stein JL, Medland SE, Hibar DP, Vasquez AA, Renteria ME, Toro R, Jahanshad N, Schumann G, Franke B, Wright MJ, Martin NG, Agartz I, Alda M, Alhusaini S, et al. The ENIGMA Consortium: large-scale collaborative analyses of neuroimaging and genetic data. Brain Imaging and Behavior. 8: 153-82. PMID 24399358 DOI: 10.1007/S11682-013-9269-5  1
2014 Dutta A, Li J, Lu H, Akech J, Pratap J, Wang T, Zerlanko BJ, FitzGerald TJ, Jiang Z, Birbe R, Wixted J, Violette SM, Stein JL, Stein GS, Lian JB, et al. Integrin αvβ6 promotes an osteolytic program in cancer cells by upregulating MMP2. Cancer Research. 74: 1598-608. PMID 24385215 DOI: 10.1158/0008-5472.Can-13-1796  1
2014 Farina NH, Wood ME, Perrapato SD, Francklyn CS, Stein GS, Stein JL, Lian JB. Standardizing analysis of circulating microRNA: clinical and biological relevance. Journal of Cellular Biochemistry. 115: 805-11. PMID 24357537 DOI: 10.1002/Jcb.24745  1
2014 Tai PW, Zaidi SK, Wu H, Grandy RA, Montecino M, van Wijnen AJ, Lian JB, Stein GS, Stein JL. The dynamic architectural and epigenetic nuclear landscape: developing the genomic almanac of biology and disease. Journal of Cellular Physiology. 229: 711-27. PMID 24242872 DOI: 10.1002/Jcp.24508  1
2014 Li M, Luo XJ, Rietschel M, Lewis CM, Mattheisen M, Müller-Myhsok B, Jamain S, Leboyer M, Landén M, Thompson PM, Cichon S, Nöthen MM, Schulze TG, Sullivan PF, Bergen SE, ... ... Stein JL, et al. Allelic differences between Europeans and Chinese for CREB1 SNPs and their implications in gene expression regulation, hippocampal structure and function, and bipolar disorder susceptibility. Molecular Psychiatry. 19: 452-61. PMID 23568192 DOI: 10.1038/Mp.2013.37  1
2014 Stein JL, Hutchinson MF, Stein JA. A new stream and nested catchment framework for Australia Hydrology and Earth System Sciences. 18: 1917-1933. DOI: 10.5194/hess-18-1917-2014  1
2014 Liu J, Jayakumar P, Stein JL, Ersal T. A multi-stage optimization formulation for MPC-based obstacle avoidance in autonomous vehicles using a LIDAR sensor Asme 2014 Dynamic Systems and Control Conference, Dscc 2014. 2. DOI: 10.1115/DSCC2014-6269  1
2014 Ersal T, Brudnak M, Salvi A, Kim Y, Siegel JB, Stein JL. An iterative learning control approach to improving fidelity in internet-distributed hardwarein-the-loop simulation Journal of Dynamic Systems, Measurement and Control, Transactions of the Asme. 136. DOI: 10.1115/1.4027868  1
2014 Pence BL, Fathy HK, Stein JL. Recursive estimation for reduced-order state-space models using polynomial chaos theory applied to vehicle mass estimation Ieee Transactions On Control Systems Technology. 22: 224-229. DOI: 10.1109/Tcst.2013.2252349  1
2014 Ge X, Brudnak MJ, Stein JL, Ersal T. A Norm Optimal Iterative Learning Control framework towards Internet-Distributed Hardware-In-The-Loop simulation Proceedings of the American Control Conference. 3802-3807. DOI: 10.1109/ACC.2014.6859243  1
2014 Burgaleta M, Stein J, Martínez K, Román F, Privado J, Escorial S, Álvarez-Linera J, Karama S, Thompson P, Colom R. Cortical and subcortical correlates of intraindividual variability in reaction time Personality and Individual Differences. 60: S28. DOI: 10.1016/j.paid.2013.07.045  0.01
2014 Stein JL, Stein S. Gray swans: Comparison of natural and financial hazard assessment and mitigation Natural Hazards. 72: 1279-1297. DOI: 10.1007/S11069-012-0388-X  1
2014 Zhou X, Ersal T, Stein JL, Bernstein DS. Battery state of health monitoring by side reaction current density estimation via retrospective-cost subsystem identificatio Asme 2014 Dynamic Systems and Control Conference, Dscc 2014. 1.  1
2013 Colom R, Stein JL, Rajagopalan P, Martínez K, Hermel D, Wang Y, Álvarez-Linera J, Burgaleta M, Quiroga MÁ, Shih PC, Thompson PM. Hippocampal structure and human cognition: key role of spatial processing and evidence supporting the efficiency hypothesis in females. Intelligence. 41: 129-140. PMID 25632167 DOI: 10.1016/J.Intell.2013.01.002  0.88
2013 Hibar DP, Medland SE, Stein JL, Kim S, Shen L, Saykin AJ, de Zubicaray GI, McMahon KL, Montgomery GW, Martin NG, Wright MJ, Djurovic S, Agartz IA, Andreassen OA, Thompson PM. Genetic clustering on the hippocampal surface for genome-wide association studies. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 16: 690-7. PMID 24579201 DOI: 10.1007/978-3-642-40763-5_85  1
2013 Hibar DP, Stein JL, Jahanshad N, Kohannim O, Toga AW, McMahon KL, de Zubicaray GI, Montgomery GW, Martin NG, Wright MJ, Weiner MW, Thompson PM. Exhaustive search of the SNP-sNP interactome identifies epistatic effects on brain volume in two cohorts. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 16: 600-7. PMID 24505811 DOI: 10.1007/978-3-642-40760-4_75  1
2013 Mueller SK, Kripalani S, Stein J, Kaboli P, Wetterneck TB, Salanitro AH, Greenwald JL, Williams MV, Etchells E, Cobaugh DJ, Halasyamani L, Labonville S, Hanson D, Shabbir H, Gardella J, et al. A toolkit to disseminate best practices in inpatient medication reconciliation: multi-center medication reconciliation quality improvement study (MARQUIS). Joint Commission Journal On Quality and Patient Safety / Joint Commission Resources. 39: 371-82. PMID 23991510 DOI: 10.1016/S1553-7250(13)39051-5  1
2013 Dowdy CR, Frederick D, Zaidi SK, Colby JL, Lian JB, van Wijnen AJ, Gerstein RM, Stein JL, Stein GS. A germline point mutation in Runx1 uncouples its role in definitive hematopoiesis from differentiation. Experimental Hematology. 41: 980-991.e1. PMID 23823022 DOI: 10.1016/J.Exphem.2013.06.006  1
2013 van der Deen M, Taipaleenmäki H, Zhang Y, Teplyuk NM, Gupta A, Cinghu S, Shogren K, Maran A, Yaszemski MJ, Ling L, Cool SM, Leong DT, Dierkes C, Zustin J, Salto-Tellez M, ... ... Stein JL, et al. MicroRNA-34c inversely couples the biological functions of the runt-related transcription factor RUNX2 and the tumor suppressor p53 in osteosarcoma. The Journal of Biological Chemistry. 288: 21307-19. PMID 23720736 DOI: 10.1074/Jbc.M112.445890  1
2013 Yoon WJ, Islam R, Cho YD, Woo KM, Baek JH, Uchida T, Komori T, van Wijnen A, Stein JL, Lian JB, Stein GS, Choi JY, Bae SC, Ryoo HM. Pin1-mediated Runx2 modification is critical for skeletal development. Journal of Cellular Physiology. 228: 2377-85. PMID 23702614 DOI: 10.1002/Jcp.24403  1
2013 Zaidi SK, Van Wijnen AJ, Lian JB, Stein JL, Stein GS. Targeting deregulated epigenetic control in cancer. Journal of Cellular Physiology. 228: 2103-8. PMID 23589100 DOI: 10.1002/Jcp.24387  1
2013 Apps R, Qi Y, Carlson JM, Chen H, Gao X, Thomas R, Yuki Y, Del Prete GQ, Goulder P, Brumme ZL, Brumme CJ, John M, Mallal S, Nelson G, Bosch R, ... ... Stein JL, et al. Influence of HLA-C expression level on HIV control. Science (New York, N.Y.). 340: 87-91. PMID 23559252 DOI: 10.1126/Science.1232685  1
2013 Pande S, Browne G, Padmanabhan S, Zaidi SK, Lian JB, van Wijnen AJ, Stein JL, Stein GS. Oncogenic cooperation between PI3K/Akt signaling and transcription factor Runx2 promotes the invasive properties of metastatic breast cancer cells. Journal of Cellular Physiology. 228: 1784-92. PMID 23389849 DOI: 10.1002/Jcp.24339  1
2013 Stein JL, Parikshak NN, Geschwind DH. Rare inherited variation in autism: beginning to see the forest and a few trees. Neuron. 77: 209-11. PMID 23352155 DOI: 10.1016/J.Neuron.2013.01.010  1
2013 Abdeen SK, Del Mare S, Hussain S, Abu-Remaileh M, Salah Z, Hagan J, Rawahneh M, Pu XA, Russell S, Stein JL, Stein GS, Lian JB, Aqeilan RI. Conditional inactivation of the mouse Wwox tumor suppressor gene recapitulates the null phenotype. Journal of Cellular Physiology. 228: 1377-82. PMID 23254685 DOI: 10.1002/Jcp.24308  1
2013 Clarke K, Tong D, Pan Y, Easley KA, Norrick B, Ko C, Wang A, Razavi B, Stein J. Reduction in catheter-associated urinary tract infections by bundling interventions. International Journal For Quality in Health Care : Journal of the International Society For Quality in Health Care / Isqua. 25: 43-9. PMID 23220761 DOI: 10.1093/Intqhc/Mzs077  1
2013 Hibar DP, Stein JL, Ryles AB, Kohannim O, Jahanshad N, Medland SE, Hansell NK, McMahon KL, de Zubicaray GI, Montgomery GW, Martin NG, Wright MJ, Saykin AJ, Jack CR, Weiner MW, et al. Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects. Brain Imaging and Behavior. 7: 102-15. PMID 22903471 DOI: 10.1007/S11682-012-9199-7  1
2013 Hovhannisyan H, Zhang Y, Hassan MQ, Wu H, Glackin C, Lian JB, Stein JL, Montecino M, Stein GS, van Wijnen AJ. Genomic occupancy of HLH, AP1 and Runx2 motifs within a nuclease sensitive site of the Runx2 gene. Journal of Cellular Physiology. 228: 313-21. PMID 22886425 DOI: 10.1002/Jcp.22109  1
2013 Rosenblatt JD, Stein JL, Bogomolov M, Thompson P, Benjamini Y. vGWAS revisited: a novel and powerful approach to voxelwise genome-wide association studies F1000research. 4. DOI: 10.7490/F1000Research.1093627.1  0.01
2013 Ersal T, Gillespie RB, Brudnak MJ, Stein JL, Fathy HK. Effect of coupling point selection on distortion in internet-distributed hardware-in-The-loop simulation International Journal of Vehicle Design. 61: 67-85. DOI: 10.1504/Ijvd.2013.050840  1
2013 Liu J, Jayakumar P, Overholt JL, Stein JL, Ersal T. The role of model fidelity in model predictive control based hazard avoidance in unmanned ground vehicles using LIDAR sensors Asme 2013 Dynamic Systems and Control Conference, Dscc 2013. 3. DOI: 10.1115/DSCC2013-4021  1
2013 Zhou X, Ersal T, Stein JL, Bernstein DS. Battery health diagnostics using retrospective-cost subsystem identification: Sensitivity to noise and initialization errors Asme 2013 Dynamic Systems and Control Conference, Dscc 2013. 3. DOI: 10.1115/DSCC2013-3953  1
2013 Tandon A, Brudnak MJ, Stein JL, Ersal T. An observer based framework to improve fidelity in internet-distributed hardware-in-The-loop simulations Asme 2013 Dynamic Systems and Control Conference, Dscc 2013. 2. DOI: 10.1115/DSCC2013-3878  1
2013 Ersal T, Ahn C, Peters DL, Whitefoot JW, Mechtenberg AR, Hiskens IA, Peng H, Stefanopoulou AG, Papalambros PY, Stein JL. Coupling between component sizing and regulation capability in microgrids Ieee Transactions On Smart Grid. 4: 1576-1585. DOI: 10.1109/Tsg.2013.2260363  1
2013 Moura SJ, Stein JL, Fathy HK. Battery-health conscious power management in plug-in hybrid electric vehicles via electrochemical modeling and stochastic control Ieee Transactions On Control Systems Technology. 21: 679-694. DOI: 10.1109/Tcst.2012.2189773  1
2013 Stein JL. Stochastic optimal control and the U.S. financial debt crisis Stochastic Optimal Control and the U.S. Financial Debt Crisis. 1-157. DOI: 10.1007/978-1-4614-3079-7  1
2012 Rajagopalan P, Jahanshad N, Stein JL, Hua X, Madsen SK, Kohannim O, Hibar DP, Toga AW, Jack CR, Saykin AJ, Green RC, Weiner MW, Bis JC, Kuller LH, Riverol M, et al. Common folate gene variant, MTHFR C677T, is associated with brain structure in two independent cohorts of people with mild cognitive impairment. Neuroimage. Clinical. 1: 179-87. PMID 24179750 DOI: 10.1016/J.Nicl.2012.09.012  1
2012 Hassan MQ, Maeda Y, Taipaleenmaki H, Zhang W, Jafferji M, Gordon JA, Li Z, Croce CM, van Wijnen AJ, Stein JL, Stein GS, Lian JB. miR-218 directs a Wnt signaling circuit to promote differentiation of osteoblasts and osteomimicry of metastatic cancer cells. The Journal of Biological Chemistry. 287: 42084-92. PMID 23060446 DOI: 10.1074/Jbc.M112.377515  1
2012 Kohannim O, Hibar DP, Jahanshad N, Stein JL, Hua X, Toga AW, Jack CR, Weiner MW, Thompson PM. PREDICTING TEMPORAL LOBE VOLUME ON MRI FROM GENOTYPES USING L(1)-L(2) REGULARIZED REGRESSION. Proceedings / Ieee International Symposium On Biomedical Imaging: From Nano to Macro. Ieee International Symposium On Biomedical Imaging. 1160-1163. PMID 22903144 DOI: 10.1109/ISBI.2012.6235766  1
2012 Kohannim O, Hibar DP, Stein JL, Jahanshad N, Hua X, Rajagopalan P, Toga AW, Jack CR, Weiner MW, de Zubicaray GI, McMahon KL, Hansell NK, Martin NG, Wright MJ, Thompson PM, et al. Discovery and Replication of Gene Influences on Brain Structure Using LASSO Regression. Frontiers in Neuroscience. 6: 115. PMID 22888310 DOI: 10.3389/Fnins.2012.00115  1
2012 Zaidi SK, Trombly DJ, Dowdy CR, Lian JB, Stein JL, van Wijnen AJ, Stein GS. Epigenetic mechanisms in leukemia. Advances in Biological Regulation. 52: 369-76. PMID 22884030 DOI: 10.1016/J.Jbior.2012.05.001  1
2012 Novak NM, Stein JL, Medland SE, Hibar DP, Thompson PM, Toga AW. EnigmaVis: online interactive visualization of genome-wide association studies of the Enhancing NeuroImaging Genetics through Meta-Analysis (ENIGMA) consortium. Twin Research and Human Genetics : the Official Journal of the International Society For Twin Studies. 15: 414-8. PMID 22856375 DOI: 10.1017/Thg.2012.17  1
2012 Hibar DP, Jahanshad N, Stein JL, Kohannim O, Toga AW, Medland SE, Hansell NK, McMahon KL, de Zubicaray GI, Montgomery GW, Martin NG, Wright MJ, Thompson PM. Alzheimer's disease risk gene, GAB2, is associated with regional brain volume differences in 755 young healthy twins. Twin Research and Human Genetics : the Official Journal of the International Society For Twin Studies. 15: 286-95. PMID 22856364 DOI: 10.1017/Thg.2012.15  1
2012 Smit DJ, van 't Ent D, de Zubicaray G, Stein JL. Neuroimaging and genetics: exploring, searching, and finding. Twin Research and Human Genetics : the Official Journal of the International Society For Twin Studies. 15: 267-72. PMID 22856362 DOI: 10.1017/Thg.2012.20  1
2012 Medina R, Ghule PN, Cruzat F, Barutcu AR, Montecino M, Stein JL, van Wijnen AJ, Stein GS. Epigenetic control of cell cycle-dependent histone gene expression is a principal component of the abbreviated pluripotent cell cycle. Molecular and Cellular Biology. 32: 3860-71. PMID 22826438 DOI: 10.1128/Mcb.00736-12  1
2012 Lutkenhoff E, Karlsgodt KH, Gutman B, Stein JL, Thompson PM, Cannon TD, Jentsch JD. Structural and functional neuroimaging phenotypes in dysbindin mutant mice. Neuroimage. 62: 120-9. PMID 22584233 DOI: 10.1016/J.Neuroimage.2012.05.008  1
2012 Zhang Y, Xie RL, Gordon J, LeBlanc K, Stein JL, Lian JB, van Wijnen AJ, Stein GS. Control of mesenchymal lineage progression by microRNAs targeting skeletal gene regulators Trps1 and Runx2. The Journal of Biological Chemistry. 287: 21926-35. PMID 22544738 DOI: 10.1074/Jbc.M112.340398  1
2012 Braskie MN, Jahanshad N, Stein JL, Barysheva M, Johnson K, McMahon KL, de Zubicaray GI, Martin NG, Wright MJ, Ringman JM, Toga AW, Thompson PM. Relationship of a variant in the NTRK1 gene to white matter microstructure in young adults. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 5964-72. PMID 22539856 DOI: 10.1523/Jneurosci.5561-11.2012  1
2012 Kohannim O, Jahanshad N, Braskie MN, Stein JL, Chiang MC, Reese AH, Hibar DP, Toga AW, McMahon KL, de Zubicaray GI, Medland SE, Montgomery GW, Martin NG, Wright MJ, Thompson PM. Predicting white matter integrity from multiple common genetic variants. Neuropsychopharmacology : Official Publication of the American College of Neuropsychopharmacology. 37: 2012-9. PMID 22510721 DOI: 10.1038/Npp.2012.49  1
2012 Bis JC, DeCarli C, Smith AV, van der Lijn F, Crivello F, Fornage M, Debette S, Shulman JM, Schmidt H, Srikanth V, Schuur M, Yu L, Choi SH, Sigurdsson S, Verhaaren BF, ... ... Stein JL, et al. Common variants at 12q14 and 12q24 are associated with hippocampal volume. Nature Genetics. 44: 545-51. PMID 22504421 DOI: 10.1038/Ng.2237  1
2012 Stein JL, Medland SE, Vasquez AA, Hibar DP, Senstad RE, Winkler AM, Toro R, Appel K, Bartecek R, Bergmann Ø, Bernard M, Brown AA, Cannon DM, Chakravarty MM, Christoforou A, et al. Identification of common variants associated with human hippocampal and intracranial volumes. Nature Genetics. 44: 552-61. PMID 22504417 DOI: 10.1038/Ng.2250  1
2012 Thomas R, Thio CL, Apps R, Qi Y, Gao X, Marti D, Stein JL, Soderberg KA, Moody MA, Goedert JJ, Kirk GD, Hoots WK, Wolinsky S, Carrington M. A novel variant marking HLA-DP expression levels predicts recovery from hepatitis B virus infection. Journal of Virology. 86: 6979-85. PMID 22496224 DOI: 10.1128/JVI.00406-12  1
2012 Sanders SJ, Murtha MT, Gupta AR, Murdoch JD, Raubeson MJ, Willsey AJ, Ercan-Sencicek AG, DiLullo NM, Parikshak NN, Stein JL, Walker MF, Ober GT, Teran NA, Song Y, El-Fishawy P, et al. De novo mutations revealed by whole-exome sequencing are strongly associated with autism. Nature. 485: 237-41. PMID 22495306 DOI: 10.1038/Nature10945  1
2012 Stein GS, Stein JL, van J Wijnen A, Lian JB, Montecino M, Medina R, Kapinas K, Ghule P, Grandy R, Zaidi SK, Becker KA. The architectural organization of human stem cell cycle regulatory machinery. Current Pharmaceutical Design. 18: 1679-85. PMID 22394165 DOI: 10.2174/138161212799859639  1
2012 Ali SA, Dobson JR, Lian JB, Stein JL, van Wijnen AJ, Zaidi SK, Stein GS. A RUNX2-HDAC1 co-repressor complex regulates rRNA gene expression by modulating UBF acetylation. Journal of Cell Science. 125: 2732-9. PMID 22393235 DOI: 10.1242/Jcs.100909  1
2012 Lian JB, Stein GS, van Wijnen AJ, Stein JL, Hassan MQ, Gaur T, Zhang Y. MicroRNA control of bone formation and homeostasis. Nature Reviews. Endocrinology. 8: 212-27. PMID 22290358 DOI: 10.1038/Nrendo.2011.234  1
2012 Jahanshad N, Kohannim O, Hibar DP, Stein JL, McMahon KL, de Zubicaray GI, Medland SE, Montgomery GW, Whitfield JB, Martin NG, Wright MJ, Toga AW, Thompson PM. Brain structure in healthy adults is related to serum transferrin and the H63D polymorphism in the HFE gene. Proceedings of the National Academy of Sciences of the United States of America. 109: E851-9. PMID 22232660 DOI: 10.1073/Pnas.1105543109  1
2012 Vounou M, Janousova E, Wolz R, Stein JL, Thompson PM, Rueckert D, Montana G. Sparse reduced-rank regression detects genetic associations with voxel-wise longitudinal phenotypes in Alzheimer's disease. Neuroimage. 60: 700-16. PMID 22209813 DOI: 10.1016/J.Neuroimage.2011.12.029  1
2012 Tejedor SC, Tong D, Stein J, Payne C, Dressler D, Xue W, Steinberg JP. Temporary central venous catheter utilization patterns in a large tertiary care center: tracking the "idle central venous catheter". Infection Control and Hospital Epidemiology. 33: 50-7. PMID 22173522 DOI: 10.1086/663645  1
2012 van der Deen M, Akech J, Lapointe D, Gupta S, Young DW, Montecino MA, Galindo M, Lian JB, Stein JL, Stein GS, van Wijnen AJ. Genomic promoter occupancy of runt-related transcription factor RUNX2 in Osteosarcoma cells identifies genes involved in cell adhesion and motility. The Journal of Biological Chemistry. 287: 4503-17. PMID 22158627 DOI: 10.1074/Jbc.M111.287771  1
2012 Marenco S, Stein JL, Savostyanova AA, Sambataro F, Tan HY, Goldman AL, Verchinski BA, Barnett AS, Dickinson D, Apud JA, Callicott JH, Meyer-Lindenberg A, Weinberger DR. Investigation of anatomical thalamo-cortical connectivity and FMRI activation in schizophrenia. Neuropsychopharmacology : Official Publication of the American College of Neuropsychopharmacology. 37: 499-507. PMID 21956440 DOI: 10.1038/Npp.2011.215  1
2012 Stein JL. Contagion and optimization in financial markets Open Applied Mathematics Journal. 6: 1-8. DOI: 10.2174/1874114201206010001  1
2012 Forman JC, Moura SJ, Stein JL, Fathy HK. Optimal experimental design for modeling battery degradation Asme 2012 5th Annual Dynamic Systems and Control Conference Joint With the Jsme 2012 11th Motion and Vibration Conference, Dscc 2012-Movic 2012. 1: 309-318. DOI: 10.1115/DSCC2012-MOVIC2012-8751  1
2012 Ersal T, Brudnak M, Stein JL. An iterative learning control approach to improving fidelity in internet-distributed hardware-in-the-loop simulation Asme 2012 5th Annual Dynamic Systems and Control Conference Joint With the Jsme 2012 11th Motion and Vibration Conference, Dscc 2012-Movic 2012. 1: 373-382. DOI: 10.1115/DSCC2012-MOVIC2012-8677  1
2012 D'Amato AM, Forman JC, Ersal T, Ali AA, Stein JL, Peng H, Bernstein DS. Noninvasive battery-health diagnostics using retrospective-cost identification of inaccessible subsystems Asme 2012 5th Annual Dynamic Systems and Control Conference Joint With the Jsme 2012 11th Motion and Vibration Conference, Dscc 2012-Movic 2012. 1: 299-307. DOI: 10.1115/DSCC2012-MOVIC2012-8649  1
2012 Ersal T, Brudnak M, Stein JL, Fathy HK. Statistical transparency analysis in internet-distributed hardware-in-the-loop simulation Ieee/Asme Transactions On Mechatronics. 17: 228-238. DOI: 10.1109/Tmech.2010.2095024  1
2012 Williams KJ, Belbin L, Austin MP, Stein JL, Ferrier S. Which environmental variables should I use in my biodiversity model? International Journal of Geographical Information Science. 26: 2009-2047. DOI: 10.1080/13658816.2012.698015  1
2012 Forman JC, Moura SJ, Stein JL, Fathy HK. Genetic identification and fisher identifiability analysis of the Doyle-Fuller-Newman model from experimental cycling of a LiFePO 4 cell Journal of Power Sources. 210: 263-275. DOI: 10.1016/J.Jpowsour.2012.03.009  1
2012 Ersal T, Ahn C, Hiskens IA, Peng H, Stefanopoulou A, Stein JL. On the effect of DC source voltage on inverter-based frequency and voltage regulation in a military microgrid Proceedings of the American Control Conference. 2965-2971.  1
2011 Zink CF, Kempf L, Hakimi S, Rainey CA, Stein JL, Meyer-Lindenberg A. Vasopressin modulates social recognition-related activity in the left temporoparietal junction in humans. Translational Psychiatry. 1: e3. PMID 22832391 DOI: 10.1038/Tp.2011.2  1
2011 Hibar DP, Kohannim O, Stein JL, Chiang MC, Thompson PM. Multilocus genetic analysis of brain images. Frontiers in Genetics. 2: 73. PMID 22303368 DOI: 10.3389/Fgene.2011.00073  1
2011 Kochunov P, Glahn DC, Nichols TE, Winkler AM, Hong EL, Holcomb HH, Stein JL, Thompson PM, Curran JE, Carless MA, Olvera RL, Johnson MP, Cole SA, Kochunov V, Kent J, et al. Genetic analysis of cortical thickness and fractional anisotropy of water diffusion in the brain. Frontiers in Neuroscience. 5: 120. PMID 22028680 DOI: 10.3389/Fnins.2011.00120  1
2011 Liu JC, Lengner CJ, Gaur T, Lou Y, Hussain S, Jones MD, Borodic B, Colby JL, Steinman HA, van Wijnen AJ, Stein JL, Jones SN, Stein GS, Lian JB. Runx2 protein expression utilizes the Runx2 P1 promoter to establish osteoprogenitor cell number for normal bone formation. The Journal of Biological Chemistry. 286: 30057-70. PMID 21676869 DOI: 10.1074/Jbc.M111.241505  1
2011 Zhang Y, Xie RL, Croce CM, Stein JL, Lian JB, van Wijnen AJ, Stein GS. A program of microRNAs controls osteogenic lineage progression by targeting transcription factor Runx2. Proceedings of the National Academy of Sciences of the United States of America. 108: 9863-8. PMID 21628588 DOI: 10.1073/Pnas.1018493108  1
2011 Liu LJ, Xie R, Hussain S, Lian JB, Rivera-Perez J, Jones SN, Stein JL, Stein GS, van Wijnen AJ. Functional coupling of transcription factor HiNF-P and histone H4 gene expression during pre- and post-natal mouse development. Gene. 483: 1-10. PMID 21605641 DOI: 10.1016/J.Gene.2011.05.002  1
2011 Gordon JA, Hassan MQ, Koss M, Montecino M, Selleri L, van Wijnen AJ, Stein JL, Stein GS, Lian JB. Epigenetic regulation of early osteogenesis and mineralized tissue formation by a HOXA10-PBX1-associated complex. Cells, Tissues, Organs. 194: 146-50. PMID 21597276 DOI: 10.1159/000324790  1
2011 Braskie MN, Jahanshad N, Stein JL, Barysheva M, McMahon KL, de Zubicaray GI, Martin NG, Wright MJ, Ringman JM, Toga AW, Thompson PM. Common Alzheimer's disease risk variant within the CLU gene affects white matter microstructure in young adults. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 31: 6764-70. PMID 21543606 DOI: 10.1523/Jneurosci.5794-10.2011  1
2011 Ho AJ, Raji CA, Saharan P, DeGiorgio A, Madsen SK, Hibar DP, Stein JL, Becker JT, Lopez OL, Toga AW, Thompson PM. Hippocampal volume is related to body mass index in Alzheimer's disease. Neuroreport. 22: 10-4. PMID 21539003 DOI: 10.1097/Wnr.0B013E3283412868  1
2011 Stein JL, Hibar DP, Madsen SK, Khamis M, McMahon KL, de Zubicaray GI, Hansell NK, Montgomery GW, Martin NG, Wright MJ, Saykin AJ, Jack CR, Weiner MW, Toga AW, Thompson PM, et al. Discovery and replication of dopamine-related gene effects on caudate volume in young and elderly populations (N=1198) using genome-wide search. Molecular Psychiatry. 16: 927-37, 881. PMID 21502949 DOI: 10.1038/Mp.2011.32  1
2011 Hibar DP, Stein JL, Kohannim O, Jahanshad N, Saykin AJ, Shen L, Kim S, Pankratz N, Foroud T, Huentelman MJ, Potkin SG, Jack CR, Weiner MW, Toga AW, Thompson PM, et al. Voxelwise gene-wide association study (vGeneWAS): multivariate gene-based association testing in 731 elderly subjects. Neuroimage. 56: 1875-91. PMID 21497199 DOI: 10.1016/J.Neuroimage.2011.03.077  1
2011 Zaidi SK, Young DW, Montecino M, van Wijnen AJ, Stein JL, Lian JB, Stein GS. Bookmarking the genome: maintenance of epigenetic information. The Journal of Biological Chemistry. 286: 18355-61. PMID 21454629 DOI: 10.1074/Jbc.R110.197061  1
2011 Henriquez B, Hepp M, Merino P, Sepulveda H, van Wijnen AJ, Lian JB, Stein GS, Stein JL, Montecino M. C/EBPβ binds the P1 promoter of the Runx2 gene and up-regulates Runx2 transcription in osteoblastic cells Journal of Cellular Physiology. 226: 3043-3052. PMID 21302301 DOI: 10.1002/Jcp.22652  1
2011 Joshi AA, Leporé N, Joshi SH, Lee AD, Barysheva M, Stein JL, McMahon KL, Johnson K, de Zubicaray GI, Martin NG, Wright MJ, Toga AW, Thompson PM. The contribution of genes to cortical thickness and volume. Neuroreport. 22: 101-5. PMID 21233781 DOI: 10.1097/Wnr.0B013E3283424C84  1
2011 Stein GS, Stein JL, van Wijnen AJ, Lian JB, Zaidi SK, Nickerson JA, Montecino MA, Young DW. An architectural genetic and epigenetic perspective. Integrative Biology : Quantitative Biosciences From Nano to Macro. 3: 297-303. PMID 21184003 DOI: 10.1039/C0Ib00103A  1
2011 Ghule PN, Medina R, Lengner CJ, Mandeville M, Qiao M, Dominski Z, Lian JB, Stein JL, van Wijnen AJ, Stein GS. Reprogramming the pluripotent cell cycle: restoration of an abbreviated G1 phase in human induced pluripotent stem (iPS) cells. Journal of Cellular Physiology. 226: 1149-56. PMID 20945438 DOI: 10.1002/Jcp.22440  1
2011 Pockwinse SM, Kota KP, Quaresma AJ, Imbalzano AN, Lian JB, van Wijnen AJ, Stein JL, Stein GS, Nickerson JA. Live cell imaging of the cancer-related transcription factor RUNX2 during mitotic progression. Journal of Cellular Physiology. 226: 1383-9. PMID 20945391 DOI: 10.1002/Jcp.22465  1
2011 Ho AJ, Raji CA, Becker JT, Lopez OL, Kuller LH, Hua X, Dinov ID, Stein JL, Rosano C, Toga AW, Thompson PM. The effects of physical activity, education, and body mass index on the aging brain. Human Brain Mapping. 32: 1371-82. PMID 20715081 DOI: 10.1002/Hbm.21113  1
2011 Forman JC, Bashash S, Stein JL, Fathy HK. Reduction of an electrochemistry-based li-ion battery model via quasi-linearization and Pad́ approximation Journal of the Electrochemical Society. 158: A93-A101. DOI: 10.1149/1.3519059  1
2011 Ahlawat R, Fathy HK, Stein JL. Iterative learning based driver input synthesis for evaluating transient diesel soot emissions Asme 2011 Dynamic Systems and Control Conference and Bath/Asme Symposium On Fluid Power and Motion Control, Dscc 2011. 2: 643-650. DOI: 10.1115/DSCC2011-6180  1
2011 Moura SJ, Forman JC, Bashash S, Stein JL, Fathy HK. Optimal control of film growth in lithium-ion battery packs via relay switches Ieee Transactions On Industrial Electronics. 58: 3555-3566. DOI: 10.1109/Tie.2010.2087294  1
2011 Moura SJ, Fathy HK, Callaway DS, Stein JL. A stochastic optimal control approach for power management in plug-in hybrid electric vehicles Ieee Transactions On Control Systems Technology. 19: 545-555. DOI: 10.1109/Tcst.2010.2043736  1
2011 Ersal T, Ahn C, Hiskens IA, Peng H, Stein JL. Impact of controlled plug-in EVs on microgrids: A military microgrid example Ieee Power and Energy Society General Meeting. DOI: 10.1109/PES.2011.6039620  1
2011 Kohannim O, Hibar DP, Stein JL, Jahanshad N, Jack CR, Weiner MW, Toga AW, Thompson PM. Boosting power to detect genetic associations in imaging using multi-locus, genome-wide scans and ridge regression Proceedings - International Symposium On Biomedical Imaging. 1855-1859. DOI: 10.1109/ISBI.2011.5872769  1
2011 Hibar DP, Stein JL, Kohannim O, Jahanshad N, Jack CR, Weiner MW, Toga AW, Thompson PM. Principal components regression: Multivariate, gene-based tests in imaging genomics Proceedings - International Symposium On Biomedical Imaging. 289-293. DOI: 10.1109/ISBI.2011.5872408  1
2011 Stein JL, Hibar DP, Madsen SK, Khamis M, McMahon KL, Zubicaray GID, Hansell NK, Montgomery GW, Martin NG, Wright MJ, Saykin AJ, Jack CRJ, Weiner MW, Toga AW, Thompson PM. Genome-wide association reveals dopamine-related genetic effects on caudate volume Molecular Psychiatry. 16: 881-881. DOI: 10.1038/Mp.2011.98  1
2011 Ersal T, Brudnak M, Salvi A, Stein JL, Filipi Z, Fathy HK. Development and model-based transparency analysis of an Internet-distributed hardware-in-the-loop simulation platform Mechatronics. 21: 22-29. DOI: 10.1016/J.Mechatronics.2010.08.002  1
2011 Stein JL. The crisis, Fed, Quants and stochastic optimal control Economic Modelling. 28: 272-280. DOI: 10.1016/j.econmod.2010.09.002  1
2011 Pence BL, Fathy HK, Stein JL. Recursive maximum likelihood parameter estimation for state space systems using polynomial chaos theory Automatica. 47: 2420-2424. DOI: 10.1016/J.Automatica.2011.08.014  1
2011 Lian JB, Stein GS, Montecino M, Stein JL, Van Wijnen AJ. Genetic and epigenetic control of the regulatory machinery for skeletal development and bone formation: Contributions of vitamin D3 Vitamin D. 301-319. DOI: 10.1016/B978-0-12-381978-9.10016-2  1
2011 Stein JL. The diversity of debt crises in europe Cesifo Forum. 12: 44-51.  1
2011 Forman JC, Moura SJ, Stein JL, Fathy HK. Genetic parameter identification of the Doyle-Fuller-Newman model from experimental cycling of a LiFePO4 battery Proceedings of the American Control Conference. 362-369.  1
2010 Pratap J, Akech J, Wixted JJ, Szabo G, Hussain S, McGee-Lawrence ME, Li X, Bedard K, Dhillon RJ, van Wijnen AJ, Stein JL, Stein GS, Westendorf JJ, Lian JB. The histone deacetylase inhibitor, vorinostat, reduces tumor growth at the metastatic bone site and associated osteolysis, but promotes normal bone loss. Molecular Cancer Therapeutics. 9: 3210-20. PMID 21159607 DOI: 10.1158/1535-7163.Mct-10-0572  1
2010 Stein GS, van Wijnen AJ, Imbalzano AN, Montecino M, Zaidi SK, Lian JB, Nickerson JA, Stein JL. Architectural genetic and epigenetic control of regulatory networks: compartmentalizing machinery for transcription and chromatin remodeling in nuclear microenvironments. Critical Reviews in Eukaryotic Gene Expression. 20: 149-55. PMID 21133844 DOI: 10.1615/Critreveukargeneexpr.V20.I2.50  1
2010 Hassan MQ, Gordon JA, Beloti MM, Croce CM, van Wijnen AJ, Stein JL, Stein GS, Lian JB. A network connecting Runx2, SATB2, and the miR-23a~27a~24-2 cluster regulates the osteoblast differentiation program. Proceedings of the National Academy of Sciences of the United States of America. 107: 19879-84. PMID 20980664 DOI: 10.1073/Pnas.1007698107  1
2010 Locke JB, Morales G, Hilgers M, G C K, Rahawi S, José Picazo J, Shaw KJ, Stein JL. Elevated linezolid resistance in clinical cfr-positive Staphylococcus aureus isolates is associated with co-occurring mutations in ribosomal protein L3. Antimicrobial Agents and Chemotherapy. 54: 5352-5. PMID 20837755 DOI: 10.1128/AAC.00714-10  1
2010 Locke JB, Finn J, Hilgers M, Morales G, Rahawi S, G C K, Picazo JJ, Im W, Shaw KJ, Stein JL. Structure-activity relationships of diverse oxazolidinones for linezolid-resistant Staphylococcus aureus strains possessing the cfr methyltransferase gene or ribosomal mutations. Antimicrobial Agents and Chemotherapy. 54: 5337-43. PMID 20837751 DOI: 10.1128/AAC.00663-10  1
2010 Zaidi SK, Young DW, Montecino M, Lian JB, Stein JL, van Wijnen AJ, Stein GS. Architectural epigenetics: mitotic retention of mammalian transcriptional regulatory information. Molecular and Cellular Biology. 30: 4758-66. PMID 20696837 DOI: 10.1128/Mcb.00646-10  1
2010 Zaidi SK, Medina RF, Pockwinse SM, Bakshi R, Kota KP, Ali SA, Young DW, Nickerson JA, Javed A, Montecino M, van Wijnen AJ, Lian JB, Stein JL, Stein GS. Subnuclear localization and intranuclear trafficking of transcription factors. Methods in Molecular Biology (Clifton, N.J.). 647: 77-93. PMID 20694661 DOI: 10.1007/978-1-60761-738-9_4  1
2010 Zaidi SK, Young DW, Montecino MA, Lian JB, van Wijnen AJ, Stein JL, Stein GS. Mitotic bookmarking of genes: a novel dimension to epigenetic control. Nature Reviews. Genetics. 11: 583-9. PMID 20628351 DOI: 10.1038/Nrg2827  1
2010 Ho AJ, Raji CA, Becker JT, Lopez OL, Kuller LH, Hua X, Lee S, Hibar D, Dinov ID, Stein JL, Jack CR, Weiner MW, Toga AW, Thompson PM, et al. Obesity is linked with lower brain volume in 700 AD and MCI patients. Neurobiology of Aging. 31: 1326-39. PMID 20570405 DOI: 10.1016/J.Neurobiolaging.2010.04.006  1
2010 Hassan MQ, Gordon JA, Lian JB, van Wijnen AJ, Stein JL, Stein GS. Ribonucleoprotein immunoprecipitation (RNP-IP): a direct in vivo analysis of microRNA-targets. Journal of Cellular Biochemistry. 110: 817-22. PMID 20564179 DOI: 10.1002/Jcb.22562  1
2010 Kurek KC, Del Mare S, Salah Z, Abdeen S, Sadiq H, Lee SH, Gaudio E, Zanesi N, Jones KB, DeYoung B, Amir G, Gebhardt M, Warman M, Stein GS, Stein JL, et al. Frequent attenuation of the WWOX tumor suppressor in osteosarcoma is associated with increased tumorigenicity and aberrant RUNX2 expression. Cancer Research. 70: 5577-86. PMID 20530675 DOI: 10.1158/0008-5472.Can-09-4602  1
2010 Bakshi R, Hassan MQ, Pratap J, Lian JB, Montecino MA, van Wijnen AJ, Stein JL, Imbalzano AN, Stein GS. The human SWI/SNF complex associates with RUNX1 to control transcription of hematopoietic target genes. Journal of Cellular Physiology. 225: 569-76. PMID 20506188 DOI: 10.1002/Jcp.22240  1
2010 Zink CF, Stein JL, Kempf L, Hakimi S, Meyer-Lindenberg A. Vasopressin modulates medial prefrontal cortex-amygdala circuitry during emotion processing in humans. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 7017-22. PMID 20484643 DOI: 10.1523/Jneurosci.4899-09.2010  1
2010 Saykin AJ, Shen L, Foroud TM, Potkin SG, Swaminathan S, Kim S, Risacher SL, Nho K, Huentelman MJ, Craig DW, Thompson PM, Stein JL, Moore JH, Farrer LA, Green RC, et al. Alzheimer's Disease Neuroimaging Initiative biomarkers as quantitative phenotypes: Genetics core aims, progress, and plans. Alzheimer's & Dementia : the Journal of the Alzheimer's Association. 6: 265-73. PMID 20451875 DOI: 10.1016/J.Jalz.2010.03.013  1
2010 Gordon JA, Hassan MQ, Saini S, Montecino M, van Wijnen AJ, Stein GS, Stein JL, Lian JB. Pbx1 represses osteoblastogenesis by blocking Hoxa10-mediated recruitment of chromatin remodeling factors. Molecular and Cellular Biology. 30: 3531-41. PMID 20439491 DOI: 10.1128/Mcb.00889-09  1
2010 Ho AJ, Stein JL, Hua X, Lee S, Hibar DP, Leow AD, Dinov ID, Toga AW, Saykin AJ, Shen L, Foroud T, Pankratz N, Huentelman MJ, Craig DW, Gerber JD, et al. A commonly carried allele of the obesity-related FTO gene is associated with reduced brain volume in the healthy elderly. Proceedings of the National Academy of Sciences of the United States of America. 107: 8404-9. PMID 20404173 DOI: 10.1073/Pnas.0910878107  1
2010 Jeong JH, Jung YK, Kim HJ, Jin JS, Kim HN, Kang SM, Kim SY, van Wijnen AJ, Stein JL, Lian JB, Stein GS, Kato S, Choi JY. The gene for aromatase, a rate-limiting enzyme for local estrogen biosynthesis, is a downstream target gene of Runx2 in skeletal tissues. Molecular and Cellular Biology. 30: 2365-75. PMID 20231365 DOI: 10.1128/Mcb.00672-09  1
2010 Han MS, Kim HJ, Wee HJ, Lim KE, Park NR, Bae SC, van Wijnen AJ, Stein JL, Lian JB, Stein GS, Choi JY. The cleidocranial dysplasia-related R131G mutation in the Runt-related transcription factor RUNX2 disrupts binding to DNA but not CBF-beta. Journal of Cellular Biochemistry. 110: 97-103. PMID 20225274 DOI: 10.1002/Jcb.22516  1
2010 Stein JL, Hua X, Morra JH, Lee S, Hibar DP, Ho AJ, Leow AD, Toga AW, Sul JH, Kang HM, Eskin E, Saykin AJ, Shen L, Foroud T, Pankratz N, et al. Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease. Neuroimage. 51: 542-54. PMID 20197096 DOI: 10.1016/J.Neuroimage.2010.02.068  1
2010 Stein JL, Hua X, Lee S, Ho AJ, Leow AD, Toga AW, Saykin AJ, Shen L, Foroud T, Pankratz N, Huentelman MJ, Craig DW, Gerber JD, Allen AN, Corneveaux JJ, et al. Voxelwise genome-wide association study (vGWAS). Neuroimage. 53: 1160-74. PMID 20171287 DOI: 10.1016/J.Neuroimage.2010.02.032  1
2010 Arriagada G, Henriquez B, Moena D, Merino P, Ruiz-Tagle C, Lian JB, Stein GS, Stein JL, Montecino M. Recruitment and subnuclear distribution of the regulatory machinery during 1alpha,25-dihydroxy vitamin D3-mediated transcriptional upregulation in osteoblasts. The Journal of Steroid Biochemistry and Molecular Biology. 121: 156-8. PMID 20171279 DOI: 10.1016/J.Jsbmb.2010.02.013  1
2010 Ali SA, Zaidi SK, Dobson JR, Shakoori AR, Lian JB, Stein JL, van Wijnen AJ, Stein GS. Transcriptional corepressor TLE1 functions with Runx2 in epigenetic repression of ribosomal RNA genes. Proceedings of the National Academy of Sciences of the United States of America. 107: 4165-9. PMID 20160071 DOI: 10.1073/Pnas.1000620107  1
2010 van der Deen M, Akech J, Wang T, FitzGerald TJ, Altieri DC, Languino LR, Lian JB, van Wijnen AJ, Stein JL, Stein GS. The cancer-related Runx2 protein enhances cell growth and responses to androgen and TGFbeta in prostate cancer cells. Journal of Cellular Biochemistry. 109: 828-37. PMID 20082326 DOI: 10.1002/Jcb.22463  1
2010 Gaur T, Hussain S, Mudhasani R, Parulkar I, Colby JL, Frederick D, Kream BE, van Wijnen AJ, Stein JL, Stein GS, Jones SN, Lian JB. Dicer inactivation in osteoprogenitor cells compromises fetal survival and bone formation, while excision in differentiated osteoblasts increases bone mass in the adult mouse. Developmental Biology. 340: 10-21. PMID 20079730 DOI: 10.1016/J.Ydbio.2010.01.008  1
2010 Shabbir H, Stein J, Tong D, Bhalla V, Wang A. A real-time nursing intervention reduces dysglycemia and improves best practices in noncritically ill hospitalized patients. Journal of Hospital Medicine. 5: E15-20. PMID 20063281 DOI: 10.1002/Jhm.590  1
2010 Dowdy CR, Xie R, Frederick D, Hussain S, Zaidi SK, Vradii D, Javed A, Li X, Jones SN, Lian JB, van Wijnen AJ, Stein JL, Stein GS. Definitive hematopoiesis requires Runx1 C-terminal-mediated subnuclear targeting and transactivation. Human Molecular Genetics. 19: 1048-57. PMID 20035012 DOI: 10.1093/Hmg/Ddp568  1
2010 Akech J, Wixted JJ, Bedard K, van der Deen M, Hussain S, Guise TA, van Wijnen AJ, Stein JL, Languino LR, Altieri DC, Pratap J, Keller E, Stein GS, Lian JB. Runx2 association with progression of prostate cancer in patients: mechanisms mediating bone osteolysis and osteoblastic metastatic lesions. Oncogene. 29: 811-21. PMID 19915614 DOI: 10.1038/Onc.2009.389  1
2010 Maynard G, Stein J. Designing and implementing effective venous thromboembolism prevention protocols: lessons from collaborative efforts. Journal of Thrombosis and Thrombolysis. 29: 159-66. PMID 19902150 DOI: 10.1007/S11239-009-0405-4  1
2010 Stein GS, Stein JL, Van Wijnen AJ, Lian JB, Montecino M, Croce CM, Choi JY, Ali SA, Pande S, Hassan MQ, Zaidi SK, Young DW. Transcription factor-mediated epigenetic regulation of cell growth and phenotype for biological control and cancer. Advances in Enzyme Regulation. 50: 160-7. PMID 19896493 DOI: 10.1016/J.Advenzreg.2009.10.026  1
2010 Becker KA, Ghule PN, Lian JB, Stein JL, van Wijnen AJ, Stein GS. Cyclin D2 and the CDK substrate p220(NPAT) are required for self-renewal of human embryonic stem cells. Journal of Cellular Physiology. 222: 456-64. PMID 19890848 DOI: 10.1002/Jcp.21967  1
2010 Arriagada G, Paredes R, van Wijnen AJ, Lian JB, van Zundert B, Stein GS, Stein JL, Montecino M. 1alpha,25-dihydroxy vitamin D(3) induces nuclear matrix association of the 1alpha,25-dihydroxy vitamin D(3) receptor in osteoblasts independently of its ability to bind DNA. Journal of Cellular Physiology. 222: 336-46. PMID 19885846 DOI: 10.1002/Jcp.21958  1
2010 Ho AJ, Hua X, Lee S, Leow AD, Yanovsky I, Gutman B, Dinov ID, Leporé N, Stein JL, Toga AW, Jack CR, Bernstein MA, Reiman EM, Harvey DJ, Kornak J, et al. Comparing 3 T and 1.5 T MRI for tracking Alzheimer's disease progression with tensor-based morphometry. Human Brain Mapping. 31: 499-514. PMID 19780044 DOI: 10.1002/Hbm.20882  1
2010 Becker KA, Stein JL, Lian JB, van Wijnen AJ, Stein GS. Human embryonic stem cells are pre-mitotically committed to self-renewal and acquire a lengthened G1 phase upon lineage programming. Journal of Cellular Physiology. 222: 103-10. PMID 19774559 DOI: 10.1002/Jcp.21925  1
2010 Moura SJ, Stein JL, Fathy HK. Battery-health conscious power management for plug-in hybrid electric vehicles via stochastic control Asme 2010 Dynamic Systems and Control Conference, Dscc2010. 1: 615-624. DOI: 10.1115/DSCC2010-4089  1
2010 Moura SJ, Forman JC, Stein JL, Fathy HK. Control of film growth in lithium ion battery packs via switches Proceedings of the Asme Dynamic Systems and Control Conference 2009, Dscc2009. 139-147. DOI: 10.1115/DSCC2009-2724  1
2010 Ersal T, Brudnak M, Stein JL, Fathy HK. Variation-based transparency analysis of an internet-distributed hardware-in-the-loop simulation platform for vehicle powertrain systems Proceedings of the Asme Dynamic Systems and Control Conference 2009, Dscc2009. 1217-1224. DOI: 10.1115/DSCC2009-2711  1
2010 Ersal T, Stein JL, Brudnak M, Filipi Z, Salvi A, Fathy HK. Development of an internet-distributed hardware-in-the-loop simulation platform for an automotive application Proceedings of the Asme Dynamic Systems and Control Conference 2009, Dscc2009. 985-992. DOI: 10.1115/DSCC2009-2709  1
2010 Pence BL, Fathy HK, Stein JL. A base -excitation approach to polynomial chaos-based estimation of sprung mass for off-road vehicles Proceedings of the Asme Dynamic Systems and Control Conference 2009, Dscc2009. 857-864. DOI: 10.1115/DSCC2009-2641  1
2010 Stein JL, Louca LS, Peng H. Physical system modeling Journal of Dynamic Systems, Measurement and Control, Transactions of the Asme. 132: 0603011-0603012. DOI: 10.1115/1.4002876  1
2010 Louca LS, Stein JL, Hulbert GM. Energy-based model reduction methodology for automated modeling Journal of Dynamic Systems, Measurement and Control, Transactions of the Asme. 132. DOI: 10.1115/1.4002473  1
2010 Stein JL. Greenspan's Retrospective of Financial Crisis and Stochastic Optimal Control European Financial Management. 16: 858-871. DOI: 10.1111/j.1468-036X.2010.00579.x  1
2010 Kennard MJ, Pusey BJ, Olden JD, MacKay SJ, Stein JL, Marsh N. Classification of natural flow regimes in Australia to support environmental flow management Freshwater Biology. 55: 171-193. DOI: 10.1111/J.1365-2427.2009.02307.X  1
2010 Ahlawat R, Hagena JR, Filipi ZS, Stein JL, Fathy HK. Volterra series estimation of transient soot emissions from a diesel engine 2010 Ieee Vehicle Power and Propulsion Conference, Vppc 2010. DOI: 10.1109/VPPC.2010.5729227  1
2010 Ersal T, Fuller HJA, Tsimhoni O, Stein JL, Fathy HK. Model-based analysis and classification of driver distraction under secondary tasks Ieee Transactions On Intelligent Transportation Systems. 11: 692-701. DOI: 10.1109/Tits.2010.2049741  1
2010 Ahlawat R, Fathy HK, Lee B, Stein JL, Jung D. Modelling and simulation of a dual-clutch transmission vehicle to analyse the effect of pump selection on fuel economy Vehicle System Dynamics. 48: 851-868. DOI: 10.1080/00423110903177042  1
2010 Moura SJ, Callaway DS, Fathy HK, Stein JL. Tradeoffs between battery energy capacity and stochastic optimal power management in plug-in hybrid electric vehicles Journal of Power Sources. 195: 2979-2988. DOI: 10.1016/J.Jpowsour.2009.11.026  1
2010 Valdês OT, Farías V, Aranda PD, Stein JL, Saade RL, Botello FJ. Mammalian diversity in climatic domains for Tehuacán- Cuicatlán Biosphere Reserve, Mexico Revista Mexicana De Biodiversidad. 81: 863-874.  1
2010 Stein JL. Greenspan, Dodd-Frank and stochastic optimal control Cesifo Forum. 11: 55-62.  1
2010 Pence BL, Fathy HK, Stein JL. A maximum likelihood approach to recursive polynomial chaos parameter estimation Proceedings of the 2010 American Control Conference, Acc 2010. 2144-2151.  1
2009 Zaidi SK, Dowdy CR, van Wijnen AJ, Lian JB, Raza A, Stein JL, Croce CM, Stein GS. Altered Runx1 subnuclear targeting enhances myeloid cell proliferation and blocks differentiation by activating a miR-24/MKP-7/MAPK network. Cancer Research. 69: 8249-55. PMID 19826043 DOI: 10.1158/0008-5472.Can-09-1567  1
2009 Eckstein I, Shattuck DW, Stein JL, McMahon KL, de Zubicaray G, Wright MJ, Thompson PM, Toga AW. Active fibers: matching deformable tract templates to diffusion tensor images. Neuroimage. 47: T82-9. PMID 19457360 DOI: 10.1016/J.Neuroimage.2009.01.065  1
2009 Zink C, Kempf L, Hakimi S, Rainey C, Stein J, Meyer-Lindenberg A. Effects of Vasopressin on MPFC-Amygdala Circuitry during Fearful Face Processing in Humans Neuroimage. 47: S184. DOI: 10.1016/S1053-8119(09)72042-7  0.01
2009 Stein J, DeGiorgio A, Madsen S, Avedissian C, Chou Y, Morra J, Toga A, McMahon K, de Zubicaray G, Wright M, Thompson P. Genetic Influences on Hippocampal Structure Mapped in 288 Twins Neuroimage. 47: S140. DOI: 10.1016/S1053-8119(09)71388-6  1
2009 Braber Ad, Ent Dv', Cath D, Boomsma D, Barysheva M, Lee A, Foland-Ross L, Stein J, Thompson P, Geus Ed. A DTI Study of Monozygotic Twins Discordant for Obsessive-Compulsive Symptoms Neuroimage. 47. DOI: 10.1016/S1053-8119(09)71227-3  1
2008 Zink CF, Tong Y, Chen Q, Bassett DS, Stein JL, Meyer-Lindenberg A. Know your place: neural processing of social hierarchy in humans. Neuron. 58: 273-83. PMID 18439411 DOI: 10.1016/J.Neuron.2008.01.025  1
2008 Marenco S, Savostyanova A, Stein JL, Tan HY, Goldman AL, Callicott JH, Apud J, Meyer-Lindenberg A, Weinberger DR. IN VIVO ASSESSMENT OF THALAMOCORTICAL CONNECTIVITY IN SCHIZOPHRENIA USING DTI AND INTEGRATIVE EVIDENCE FROM fMRI Schizophrenia Research. 102: 89. DOI: 10.1016/S0920-9964(08)70270-6  0.01
2008 Stein JL, Wiedholz LM, Bassett DS, Weinberger DR, Zink CF, Mattay VS, Meyer-Lindenberg A. Corrigendum to "A validated network of effective amygdala connectivity" [NeuroImage 36 (2007) 736-745] (DOI:10.1016/j.neuroimage.2007.03.022) Neuroimage. 39: 548. DOI: 10.1016/J.Neuroimage.2007.03.081  1
2007 Stein JL, Wiedholz LM, Bassett DS, Weinberger DR, Zink CF, Mattay VS, Meyer-Lindenberg A. A validated network of effective amygdala connectivity. Neuroimage. 36: 736-45. PMID 17475514 DOI: 10.1016/J.Neuroimage.2007.03.022  1
2006 Stein J. The language of quality improvement: therapy classes. Journal of Hospital Medicine. 1: 327-330. PMID 17219524 DOI: 10.1002/Jhm.139  0.01
2006 McKean S, Stein J, Maynard G, Budnitz T, Amin A, Johnson S, Wellikson L. Curriculum development: the venous thromboembolism quality improvement resource room. Journal of Hospital Medicine. 1: 124-132. PMID 17219483 DOI: 10.1002/Jhm.83  1
2006 Stein J, McKean SCW, Maynard G, Budnitz T, Amin A. Practice-based learning innovation: The venous thromboembolism quality improvement resource room Journal of Hospital Medicine. 1: 326-326. DOI: 10.1002/Jhm.117  0.01
1934 Stein JL. Phrenic Nerve Paralysis in the New-Born. Associated with Duchenne—Erbʼs Paralysis The Journal of Nervous and Mental Disease. 79: 693. DOI: 10.1097/00005053-193406000-00017  0.01
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