Aleksey V. Zimin, Ph.D. - Publications

Institution:
University of Maryland, College Park, College Park, MD

24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Liu Z, Liu S, Yao J, Bao L, Zhang J, Li Y, Jiang C, Sun L, Wang R, Zhang Y, Zhou T, Zeng Q, Fu Q, Gao S, Li N, ... ... Zimin A, et al. The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts. Nature Communications. 7: 11757. PMID 27249958 DOI: 10.1038/Ncomms11757  0.88
2016 Li G, Hillier LW, Grahn R, Zimin AV, David VA, Menotti-Raymond M, Middleton R, Hannah S, Hendrickson S, Makunin A, O'Brien SJ, Minx P, Wilson RK, Lyons LA, Warren WC, et al. A High-Resolution SNP Array-Based Linkage Map Anchors a New Domestic Cat Draft Genome Assembly and Provides Detailed Patterns of Recombination. G3 (Bethesda, Md.). PMID 27172201 DOI: 10.1534/G3.116.028746  0.88
2016 Lien S, Koop BF, Sandve SR, Miller JR, Kent MP, Nome T, Hvidsten TR, Leong JS, Minkley DR, Zimin A, Grammes F, Grove H, Gjuvsland A, Walenz B, Hermansen RA, et al. The Atlantic salmon genome provides insights into rediploidization. Nature. PMID 27088604 DOI: 10.1038/Nature17164  0.88
2014 Schrader L, Kim JW, Ence D, Zimin A, Klein A, Wyschetzki K, Weichselgartner T, Kemena C, Stökl J, Schultner E, Wurm Y, Smith CD, Yandell M, Heinze J, Gadau J, et al. Transposable element islands facilitate adaptation to novel environments in an invasive species. Nature Communications. 5: 5495. PMID 25510865 DOI: 10.1038/Ncomms6495  0.88
2014 Wegrzyn JL, Liechty JD, Stevens KA, Wu LS, Loopstra CA, Vasquez-Gross HA, Dougherty WM, Lin BY, Zieve JJ, Martínez-García PJ, Holt C, Yandell M, Zimin AV, Yorke JA, Crepeau MW, et al. Unique features of the loblolly pine (Pinus taeda L.) megagenome revealed through sequence annotation. Genetics. 196: 891-909. PMID 24653211 DOI: 10.1534/Genetics.113.159996  0.88
2014 Zimin A, Stevens KA, Crepeau MW, Holtz-Morris A, Koriabine M, Marçais G, Puiu D, Roberts M, Wegrzyn JL, de Jong PJ, Neale DB, Salzberg SL, Yorke JA, Langley CH. Sequencing and assembly of the 22-gb loblolly pine genome. Genetics. 196: 875-90. PMID 24653210 DOI: 10.1534/Genetics.113.159715  0.88
2014 Neale DB, Wegrzyn JL, Stevens KA, Zimin AV, Puiu D, Crepeau MW, Cardeno C, Koriabine M, Holtz-Morris AE, Liechty JD, Martínez-García PJ, Vasquez-Gross HA, Lin BY, Zieve JJ, Dougherty WM, et al. Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies. Genome Biology. 15: R59. PMID 24647006 DOI: 10.1186/Gb-2014-15-3-R59  0.88
2014 Dalloul RA, Zimin AV, Settlage RE, Kim S, Reed KM. Next-generation sequencing strategies for characterizing the turkey genome. Poultry Science. 93: 479-84. PMID 24570472 DOI: 10.3382/Ps.2013-03560  0.88
2013 Zimin AV, Marçais G, Puiu D, Roberts M, Salzberg SL, Yorke JA. The MaSuRCA genome assembler. Bioinformatics (Oxford, England). 29: 2669-77. PMID 23990416 DOI: 10.1093/Bioinformatics/Btt476  0.88
2012 Zimin AV, Kelley DR, Roberts M, Marçais G, Salzberg SL, Yorke JA. Mis-assembled "segmental duplications" in two versions of the Bos taurus genome. Plos One. 7: e42680. PMID 22880081 DOI: 10.1371/Journal.Pone.0042680  0.88
2012 . Butterfly genome reveals promiscuous exchange of mimicry adaptations among species. Nature. 487: 94-8. PMID 22722851 DOI: 10.1038/Nature11041  0.88
2012 Salzberg SL, Phillippy AM, Zimin A, Puiu D, Magoc T, Koren S, Treangen TJ, Schatz MC, Delcher AL, Roberts M, Marçais G, Pop M, Yorke JA. GAGE: A critical evaluation of genome assemblies and assembly algorithms. Genome Research. 22: 557-67. PMID 22147368 DOI: 10.1101/Gr.131383.111  0.88
2011 Smith CR, Smith CD, Robertson HM, Helmkampf M, Zimin A, Yandell M, Holt C, Hu H, Abouheif E, Benton R, Cash E, Croset V, Currie CR, Elhaik E, Elsik CG, et al. Draft genome of the red harvester ant Pogonomyrmex barbatus. Proceedings of the National Academy of Sciences of the United States of America. 108: 5667-72. PMID 21282651 DOI: 10.1073/Pnas.1007901108  0.88
2011 Smith CD, Zimin A, Holt C, Abouheif E, Benton R, Cash E, Croset V, Currie CR, Elhaik E, Elsik CG, Fave MJ, Fernandes V, Gadau J, Gibson JD, Graur D, et al. Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile). Proceedings of the National Academy of Sciences of the United States of America. 108: 5673-8. PMID 21282631 DOI: 10.1073/Pnas.1008617108  0.88
2010 Dalloul RA, Long JA, Zimin AV, Aslam L, Beal K, Blomberg Le Ann, Bouffard P, Burt DW, Crasta O, Crooijmans RP, Cooper K, Coulombe RA, De S, Delany ME, Dodgson JB, et al. Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis. Plos Biology. 8. PMID 20838655 DOI: 10.1371/Journal.Pbio.1000475  0.88
2009 Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marçais G, Roberts M, Subramanian P, Yorke JA, Salzberg SL. A whole-genome assembly of the domestic cow, Bos taurus. Genome Biology. 10: R42. PMID 19393038 DOI: 10.1186/Gb-2009-10-4-R42  0.88
2008 Roberts M, Zimin AV, Hayes W, Hunt BR, Ustun C, White JR, Havlak P, Yorke J. Improving Phrap-based assembly of the rat using "reliable" overlaps. Plos One. 3: e1836. PMID 18350171 DOI: 10.1371/Journal.Pone.0001836  0.88
2006 Zimin AV, Szunyogh I, Hunt BR, Ott E. Extracting envelopes of nonzonally propagating Rossby wave packets Monthly Weather Review. 134: 1329-1333. DOI: 10.1175/Mwr3122.1  0.88
2004 Baek SJ, Hunt BR, Szunyogh I, Zimin A, Ott E. Localized error bursts in estimating the state of spatiotemporal chaos. Chaos (Woodbury, N.Y.). 14: 1042-9. PMID 15568918 DOI: 10.1063/1.1788091  0.88
2004 Ott E, Hunt BR, Szunyogh I, Zimin AV, Kostelich EJ, Corazza M, Kalnay E, Patil DJ, Yorke JA. A local ensemble Kalman filter for atmospheric data assimilation Tellus, Series a: Dynamic Meteorology and Oceanography. 56: 415-428. DOI: 10.3402/Tellusa.V56I5.14462  0.88
2004 Hunt BR, Kalnay E, Kostelich EJ, Ott E, Patil DJ, Sauer T, Szunyogh I, Yorke JA, Zimin AV. Four-dimensional ensemble Kalman filtering Tellus, Series a: Dynamic Meteorology and Oceanography. 56: 273-277. DOI: 10.3402/Tellusa.V56I4.14424  0.88
2004 Ott E, Hunt BR, Szunyogh I, Zimin AV, Kostelich EJ, Corazza M, Kalnay E, Patil DJ, Yorke JA. Estimating the state of large spatio-temporally chaotic systems Physics Letters, Section a: General, Atomic and Solid State Physics. 330: 365-370. DOI: 10.1016/J.Physleta.2004.08.004  0.88
2003 Zimin AV, Hunt BR, Ott E. Bifurcation scenarios for bubbling transition. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 67: 016204. PMID 12636582 DOI: 10.1103/Physreve.67.016204  0.88
2003 Zimin AV, Szunyogh I, Patil DJ, Hunt BR, Ott E. Extracting envelopes of Rossby wave packets Monthly Weather Review. 131: 1011-1017. DOI: 10.1175/1520-0493(2003)131<1011:Eeorwp>2.0.Co;2  0.88
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