Arjen van Ooyen - Publications

Affiliations: 
Vrije Universiteit Amsterdam, Amsterdam, Netherlands 
Website:
http://www.falw.vu/~aooyen/

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Year Citation  Score
2015 Avella Gonzalez OJ, Mansvelder HD, van Pelt J, van Ooyen A. H-Channels Affect Frequency, Power and Amplitude Fluctuations of Neuronal Network Oscillations. Frontiers in Computational Neuroscience. 9: 141. PMID 26635594 DOI: 10.3389/fncom.2015.00141  1
2014 Butz M, Steenbuck ID, van Ooyen A. Homeostatic structural plasticity can account for topology changes following deafferentation and focal stroke. Frontiers in Neuroanatomy. 8: 115. PMID 25360087 DOI: 10.3389/fnana.2014.00115  1
2014 van Pelt J, van Ooyen A, Uylings HB. Axonal and dendritic density field estimation from incomplete single-slice neuronal reconstructions. Frontiers in Neuroanatomy. 8: 54. PMID 25009472 DOI: 10.3389/fnana.2014.00054  1
2014 Avella Gonzalez OJ, van Aerde KI, Mansvelder HD, van Pelt J, van Ooyen A. Inter-network interactions: impact of connections between oscillatory neuronal networks on oscillation frequency and pattern. Plos One. 9: e100899. PMID 25007325 DOI: 10.1371/journal.pone.0100899  0.52
2014 Groen MR, Paulsen O, Pérez-Garci E, Nevian T, Wortel J, Dekker MP, Mansvelder HD, van Ooyen A, Meredith RM. Development of dendritic tonic GABAergic inhibition regulates excitability and plasticity in CA1 pyramidal neurons. Journal of Neurophysiology. 112: 287-99. PMID 24760781 DOI: 10.1152/jn.00066.2014  1
2014 Butz M, Steenbuck ID, van Ooyen A. Homeostatic structural plasticity increases the efficiency of small-world networks. Frontiers in Synaptic Neuroscience. 6: 7. PMID 24744727 DOI: 10.3389/fnsyn.2014.00007  1
2014 Hjorth JJ, van Pelt J, Mansvelder HD, van Ooyen A. Competitive dynamics during resource-driven neurite outgrowth. Plos One. 9: e86741. PMID 24498280 DOI: 10.1371/journal.pone.0086741  1
2014 McAssey MP, Bijma F, Tarigan B, van Pelt J, van Ooyen A, de Gunst M. A morpho-density approach to estimating neural connectivity. Plos One. 9: e86526. PMID 24489738 DOI: 10.1371/journal.pone.0086526  1
2014 van Ooyen A, Carnell A, de Ridder S, Tarigan B, Mansvelder HD, Bijma F, de Gunst M, van Pelt J. Independently outgrowing neurons and geometry-based synapse formation produce networks with realistic synaptic connectivity. Plos One. 9: e85858. PMID 24454938 DOI: 10.1371/journal.pone.0085858  1
2013 van Pelt J, van Ooyen A. Estimating neuronal connectivity from axonal and dendritic density fields. Frontiers in Computational Neuroscience. 7: 160. PMID 24324430 DOI: 10.3389/fncom.2013.00160  1
2013 Butz M, van Ooyen A. A simple rule for dendritic spine and axonal bouton formation can account for cortical reorganization after focal retinal lesions. Plos Computational Biology. 9: e1003259. PMID 24130472 DOI: 10.1371/journal.pcbi.1003259  1
2012 Olde Scheper TV, Mansvelder HD, van Ooyen A. Short term depression unmasks the ghost frequency. Plos One. 7: e50189. PMID 23227159 DOI: 10.1371/journal.pone.0050189  1
2012 Avella Gonzalez OJ, van Aerde KI, van Elburg RA, Poil SS, Mansvelder HD, Linkenkaer-Hansen K, van Pelt J, van Ooyen A. External drive to inhibitory cells induces alternating episodes of high- and low-amplitude oscillations. Plos Computational Biology. 8: e1002666. PMID 22956901 DOI: 10.1371/journal.pcbi.1002666  1
2012 Sterratt DC, Groen MR, Meredith RM, van Ooyen A. Spine calcium transients induced by synaptically-evoked action potentials can predict synapse location and establish synaptic democracy. Plos Computational Biology. 8: e1002545. PMID 22719238 DOI: 10.1371/journal.pcbi.1002545  1
2012 Rombouts JO, Van Ooyen A, Roelfsema PR, Bohte SM. Biologically plausible multi-dimensional reinforcement learning in neural networks Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7552: 443-450. DOI: 10.1007/978-3-642-33269-2_56  1
2011 Jansen R, Timmerman J, Loos M, Spijker S, van Ooyen A, Brussaard AB, Mansvelder HD, Smit AB, de Gunst M, Linkenkaer-Hansen K. Novel candidate genes associated with hippocampal oscillations. Plos One. 6: e26586. PMID 22066001 DOI: 10.1371/journal.pone.0026586  1
2011 van Ooyen A. Using theoretical models to analyse neural development. Nature Reviews. Neuroscience. 12: 311-26. PMID 21587288 DOI: 10.1038/nrn3031  1
2011 Schmitz SK, Hjorth JJ, Joemai RM, Wijntjes R, Eijgenraam S, de Bruijn P, Georgiou C, de Jong AP, van Ooyen A, Verhage M, Cornelisse LN, Toonen RF, Veldkamp WJ, Veldkamp W. Automated analysis of neuronal morphology, synapse number and synaptic recruitment. Journal of Neuroscience Methods. 195: 185-93. PMID 21167201 DOI: 10.1016/j.jneumeth.2010.12.011  1
2011 Schmitz SK, Hjorth JJJ, Joemai RMS, Wijntjes R, Eijgenraam S, de Bruijn P, Georgiou C, de Jong APH, van Ooyen A, Verhage M, Cornelisse LN, Toonen RF, Veldkamp WJH. Corrigendum to " Automated analysis of neuronal morphology, synapse number and synaptic recruitment" [J. Neurosci. Methods 195 (2) (2011) 185-193] Journal of Neuroscience Methods. 197: 190. DOI: 10.1016/j.jneumeth.2011.01.028  1
2010 van Pelt J, Carnell A, de Ridder S, Mansvelder HD, van Ooyen A. An algorithm for finding candidate synaptic sites in computer generated networks of neurons with realistic morphologies. Frontiers in Computational Neuroscience. 4: 148. PMID 21160548 DOI: 10.3389/fncom.2010.00148  1
2010 van Elburg RA, van Ooyen A. Impact of dendritic size and dendritic topology on burst firing in pyramidal cells. Plos Computational Biology. 6: e1000781. PMID 20485556 DOI: 10.1371/journal.pcbi.1000781  1
2010 Roelfsema PR, van Ooyen A, Watanabe T. Perceptual learning rules based on reinforcers and attention. Trends in Cognitive Sciences. 14: 64-71. PMID 20060771 DOI: 10.1016/j.tics.2009.11.005  1
2010 Houweling AR, van Ooyen A. Homeostasis at Multiple Spatial and Temporal Scales Encyclopedia of Neuroscience. 1189-1194. DOI: 10.1016/B978-008045046-9.01408-X  1
2009 Jansen R, Linkenkaer-Hansen K, Heistek T, Timmerman J, Mansvelder HD, Brussaard AB, de Gunst M, van Ooyen A. Inbred mouse strains differ in multiple hippocampal activity traits. The European Journal of Neuroscience. 30: 1092-100. PMID 19735297 DOI: 10.1111/j.1460-9568.2009.06883.x  1
2009 Butz M, van Ooyen A, Wörgötter F. A model for cortical rewiring following deafferentation and focal stroke. Frontiers in Computational Neuroscience. 3: 10. PMID 19680468 DOI: 10.3389/neuro.10.010.2009  1
2009 Koene RA, Tijms B, van Hees P, Postma F, de Ridder A, Ramakers GJ, van Pelt J, van Ooyen A. NETMORPH: a framework for the stochastic generation of large scale neuronal networks with realistic neuron morphologies. Neuroinformatics. 7: 195-210. PMID 19672726 DOI: 10.1007/s12021-009-9052-3  1
2009 Kaiser M, Hilgetag CC, van Ooyen A. A simple rule for axon outgrowth and synaptic competition generates realistic connection lengths and filling fractions. Cerebral Cortex (New York, N.Y. : 1991). 19: 3001-10. PMID 19435708 DOI: 10.1093/cercor/bhp071  1
2009 van Elburg RA, van Ooyen A. Generalization of the event-based Carnevale-Hines integration scheme for integrate-and-fire models. Neural Computation. 21: 1913-30. PMID 19292645 DOI: 10.1162/neco.2009.07-08-815  1
2009 Montez T, Poil SS, Jones BF, Manshanden I, Verbunt JP, van Dijk BW, Brussaard AB, van Ooyen A, Stam CJ, Scheltens P, Linkenkaer-Hansen K. Altered temporal correlations in parietal alpha and prefrontal theta oscillations in early-stage Alzheimer disease. Proceedings of the National Academy of Sciences of the United States of America. 106: 1614-9. PMID 19164579 DOI: 10.1073/pnas.0811699106  1
2009 Butz M, Wörgötter F, van Ooyen A. Activity-dependent structural plasticity. Brain Research Reviews. 60: 287-305. PMID 19162072 DOI: 10.1016/j.brainresrev.2008.12.023  1
2008 Butz M, Teuchert-Noodt G, Grafen K, van Ooyen A. Inverse relationship between adult hippocampal cell proliferation and synaptic rewiring in the dentate gyrus. Hippocampus. 18: 879-98. PMID 18481284 DOI: 10.1002/hipo.20445  1
2008 Poil SS, van Ooyen A, Linkenkaer-Hansen K. Avalanche dynamics of human brain oscillations: relation to critical branching processes and temporal correlations. Human Brain Mapping. 29: 770-7. PMID 18454457 DOI: 10.1002/hbm.20590  1
2008 Vajda I, van Pelt J, Wolters P, Chiappalone M, Martinoia S, van Someren E, van Ooyen A. Low-frequency stimulation induces stable transitions in stereotypical activity in cortical networks. Biophysical Journal. 94: 5028-39. PMID 18339760 DOI: 10.1529/biophysj.107.112730  1
2008 Goodhill G, Baker C, Balasubramanian V, Bazhenov M, Beck J, Becker S, Bethge M, Boahen K, Boden M, Bonin V, Bouret S, Fairhall A, Flash T, French R, Gillies A, ... ... Van Ooyen A, et al. Network: Computation in Neural Systems: Editorial Network: Computation in Neural Systems. 19: 1-2. DOI: 10.1080/09548980801915409  1
2007 Linkenkaer-Hansen K, Smit DJ, Barkil A, van Beijsterveldt TE, Brussaard AB, Boomsma DI, van Ooyen A, de Geus EJ. Genetic contributions to long-range temporal correlations in ongoing oscillations. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 27: 13882-9. PMID 18077700 DOI: 10.1523/JNEUROSCI.3083-07.2007  1
2006 Graham BP, van Ooyen A. Mathematical modelling and numerical simulation of the morphological development of neurons. Bmc Neuroscience. 7: S9. PMID 17118163 DOI: 10.1186/1471-2202-7-S1-S9  1
2006 Steuber V, Willshaw D, Van Ooyen A. Generation of time delays: simplified models of intracellular signalling in cerebellar Purkinje cells. Network (Bristol, England). 17: 173-91. PMID 16818396 DOI: 10.1080/09548980500520328  1
2006 van Ooyen A, Roelfsema PR. Envisioning the reward. Neuron. 50: 188-90. PMID 16630831 DOI: 10.1016/j.neuron.2006.04.008  1
2006 Janulevicius A, van Pelt J, van Ooyen A. Compartment volume influences microtubule dynamic instability: a model study. Biophysical Journal. 90: 788-98. PMID 16410484 DOI: 10.1529/biophysj.105.059410  1
2005 Roelfsema PR, van Ooyen A. Attention-gated reinforcement learning of internal representations for classification. Neural Computation. 17: 2176-214. PMID 16105222 DOI: 10.1162/0899766054615699  1
2005 Bosman L, Lodder JC, van Ooyen A, Brussaard AB. Role of synaptic inhibition in spatiotemporal patterning of cortical activity. Progress in Brain Research. 147: 201-4. PMID 15581707 DOI: 10.1016/S0079-6123(04)47015-0  1
2005 Kiddie G, McLean D, Van Ooyen A, Graham B. Biologically plausible models of neurite outgrowth. Progress in Brain Research. 147: 67-80. PMID 15581698 DOI: 10.1016/S0079-6123(04)47006-X  1
2004 Graham BP, van Ooyen A. Transport limited effects in a model of dendritic branching. Journal of Theoretical Biology. 230: 421-32. PMID 15321709 DOI: 10.1016/j.jtbi.2004.06.007  1
2004 Van Pelt J, Kamermans M, Levelt C, Van Ooyen A, Ramakers G, Roelfsema P. Progress in Brain Research: Preface Progress in Brain Research. 147: ix-x. DOI: 10.1016/S0079-6123(04)47027-7  1
2004 McLean DR, van Ooyen A, Graham BP. Continuum model for tubulin-driven neurite elongation Neurocomputing. 58: 511-516. DOI: 10.1016/j.neucom.2004.01.088  1
2004 van Elburg RAJ, van Ooyen A. A new measure for bursting Neurocomputing. 58: 497-502. DOI: 10.1016/j.neucom.2004.01.086  1
2004 Sterratt DC, van Ooyen A. Does a dendritic democracy need a ruler? Neurocomputing. 58: 437-442. DOI: 10.1016/j.neucom.2004.01.078  1
2004 van Ooyen A, Bosman L, Brussaard A. Influence of the decay time of the GABAergic postsynaptic current on the spatial spread of network activity Neurocomputing. 58: 291-295. DOI: 10.1016/j.neucom.2004.01.058  1
2002 van Ooyen A, Duijnhouwer J, Remme MW, van Pelt J. The effect of dendritic topology on firing patterns in model neurons. Network (Bristol, England). 13: 311-25. PMID 12222816 DOI: 10.1088/0954-898X/13/3/304  1
2002 Sterratt DC, Van Ooyen A. Does morphology influence temporal plasticity? Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2415: 186-191.  1
2001 van Pelt J, van Ooyen A, Uylings HB. The need for integrating neuronal morphology databases and computational environments in exploring neuronal structure and function. Anatomy and Embryology. 204: 255-65. PMID 11720232 DOI: 10.1007/s004290100197  1
2001 van Ooyen A. Competition in the development of nerve connections: a review of models. Network (Bristol, England). 12: R1-47. PMID 11254084 DOI: 10.1088/0954-898X/12/1/201  1
2001 Ramakers GJ, Avci B, van Hulten P, van Ooyen A, van Pelt J, Pool CW, Lequin MB. The role of calcium signaling in early axonal and dendritic morphogenesis of rat cerebral cortex neurons under non-stimulated growth conditions. Brain Research. Developmental Brain Research. 126: 163-72. PMID 11248350 DOI: 10.1016/S0165-3806(00)00148-6  1
2001 Duijnhouwer J, Remme MWH, Van Ooyen A, Van Pelt J. Influence of dendritic topology on firing patterns in model neurons Neurocomputing. 38: 183-189. DOI: 10.1016/S0925-2312(01)00502-1  1
2001 Van Ooyen A, P. Graham B, J.a. Ramakers G. Competition for tubulin between growing neurites during development Neurocomputing. 38: 73-78. DOI: 10.1016/S0925-2312(01)00487-8  1
2001 Graham BP, Van Ooyen A. Compartmental models of growing neurites Neurocomputing. 38: 31-36. DOI: 10.1016/S0925-2312(01)00463-5  1
2000 van Ooyen A, Willshaw DJ. Development of nerve connections under the control of neurotrophic factors: parallels with consumer-resource systems in population biology. Journal of Theoretical Biology. 206: 195-210. PMID 10966757 DOI: 10.1006/jtbi.2000.2114  1
2000 Eglen SJ, van Ooyen A, Willshaw DJ. Lateral cell movement driven by dendritic interactions is sufficient to form retinal mosaics. Network (Bristol, England). 11: 103-18. PMID 10735531  1
2000 Van Ooyen A, Willshaw DJ, Ramakers GJA. Influence of dendritic morphology on axonal competition Neurocomputing. 32: 255-260. DOI: 10.1016/S0925-2312(00)00172-7  1
2000 Hentschel HGE, Van Ooyen A. Dynamic mechanisms for bundling and guidance during neural network formation Physica a: Statistical Mechanics and Its Applications. 288: 369-379. DOI: 10.1016/S0378-4371(00)00434-9  1
1999 van Ooyen A, Willshaw DJ. Competition for neurotrophic factor in the development of nerve connections. Proceedings. Biological Sciences / the Royal Society. 266: 883-92. PMID 10380678 DOI: 10.1098/rspb.1999.0719  1
1999 van Ooyen A, Willshaw DJ. Poly- and mononeuronal innervation in a model for the development of neuromuscular connections. Journal of Theoretical Biology. 196: 495-511. PMID 10036202 DOI: 10.1006/jtbi.1998.0849  1
1999 Eglen SJ, van Ooyen A. Modelling retinal mosaic development with dendritic outgrowth and lateral cell movement Iee Conference Publication. 1: 377-382.  1
1997 van Oss C, van Ooyen A. Effects of inhibition on neural network development through activity-dependent neurite outgrowth. Journal of Theoretical Biology. 185: 263-80. PMID 9135804 DOI: 10.1006/jtbi.1996.0361  1
1997 Van Ooyen A, Willshaw DJ. Competition amongst neurons for neurotrophins Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 1327: 140-144.  1
1996 van Pelt J, van Ooyen A, Corner MA. Growth cone dynamics and activity-dependent processes in neuronal network development. Progress in Brain Research. 108: 333-46. PMID 8979812  1
1996 van Ooyen A, van Pelt J. Complex periodic behaviour in a neural network model with activity-dependent neurite outgrowth. Journal of Theoretical Biology. 179: 229-42. PMID 8762335 DOI: 10.1006/jtbi.1996.0063  1
1996 Van Ooyen A. Network connectivity changes through activity-dependent neurite outgrowth Neural Processing Letters. 3: 123-130.  1
1995 Van Ooyen A, Van Pelt J, Corner MA. Implications of activity dependent neurite outgrowth for neuronal morphology and network development. Journal of Theoretical Biology. 172: 63-82. PMID 7891450 DOI: 10.1006/jtbi.1995.0005  1
1994 van Ooyen A, van Pelt J. Activity-dependent neurite outgrowth and neural network development. Progress in Brain Research. 102: 245-59. PMID 7800816 DOI: 10.1016/S0079-6123(08)60544-0  1
1994 van Ooyen A. Activity-dependent neural network development Network: Computation in Neural Systems. 5: 401-423. DOI: 10.1088/0954-898X_5_3_006  1
1994 Van Ooyen A, Van Pelt J. Activity-dependent outgrowth of neurons and overshoot phenomena in developing neural networks Journal of Theoretical Biology. 167: 27-43. DOI: 10.1006/jtbi.1994.1047  1
1993 van Ooyen A, Nienhuis B. Pattern recognition in the neocognitron is improved by neuronal adaptation. Biological Cybernetics. 70: 47-53. PMID 8312398 DOI: 10.1007/BF00202565  1
1993 van Ooyen A, Nienhuis B. Response to letter by N. Weymaere Neural Networks. 6: 611-612. DOI: 10.1016/S0893-6080(05)80105-4  1
1992 van Ooyen A, van Pelt J, Corner MA, da Silva FH, van Ooyten A. The emergence of long-lasting transients of activity in simple neural networks. Biological Cybernetics. 67: 269-77. PMID 1498190 DOI: 10.1007/BF00204400  0.52
1992 van Ooyen A, van Pelt J, Corner MA, Lopes da Silva FH. Long-lasting transients of activation in neural networks Neurocomputing. 4: 75-87. DOI: 10.1016/0925-2312(92)90045-Q  1
1992 Van Ooyen A, Nienhuis B. Improving the convergence of the back-propagation algorithm Neural Networks. 5: 465-471. DOI: 10.1016/0893-6080(92)90008-7  1
1992 van Ooyen A, van Pelt J, Corner MA, da Silva FHL. The emergence of long-lasting transients of activity in simple neural networks Biological Cybernetics. 68: 93. DOI: 10.1007/BF00203141  1
Low-probability matches
2010 Göbbels K, Thiebes AL, van Ooyen A, Schnakenberg U, Bräunig P. Low density cell culture of locust neurons in closed-channel microfluidic devices. Journal of Insect Physiology. 56: 1003-9. PMID 20566412 DOI: 10.1016/j.jinsphys.2010.05.017  0.01
2010 Göbbels K, Kuenzel T, van Ooyen A, Baumgartner W, Schnakenberg U, Bräunig P. Neuronal cell growth on iridium oxide. Biomaterials. 31: 1055-67. PMID 19857894 DOI: 10.1016/j.biomaterials.2009.10.029  0.01
2009 van Ooyen A, Zagolla VG, Ulrich C, Schnakenberg U. Pulse-clamp technique for single neuron stimulation electrode characterization. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2009: 1635-8. PMID 19964763 DOI: 10.1109/IEMBS.2009.5334236  0.01
1976 van Ooyen AJ, Gruber M, Jorgensen P. The mechanism of action of ppGpp on rRNA synthesis in vitro. Cell. 8: 123-8. PMID 8211 DOI: 10.1016/0092-8674(76)90193-8  0.04
2011 Andersen MR, Salazar MP, Schaap PJ, van de Vondervoort PJ, Culley D, Thykaer J, Frisvad JC, Nielsen KF, Albang R, Albermann K, Berka RM, Braus GH, Braus-Stromeyer SA, Corrochano LM, Dai Z, ... ... van Ooyen AJ, et al. Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88. Genome Research. 21: 885-97. PMID 21543515 DOI: 10.1101/gr.112169.110  0.01
2011 Breitenbach J, Visser H, Verdoes JC, van Ooyen AJ, Sandmann G. Engineering of geranylgeranyl pyrophosphate synthase levels and physiological conditions for enhanced carotenoid and astaxanthin synthesis in Xanthophyllomyces dendrorhous. Biotechnology Letters. 33: 755-61. PMID 21165672 DOI: 10.1007/s10529-010-0495-2  0.01
2011 Kirchner J, Van Ooyen A, Ershov S, Skerl O. Enhancement of pulse contour analysis in the pulmonary artery by use of heart sounds Proceedings of Ieee Sensors. 1792-1795. DOI: 10.1109/ICSENS.2011.6127104  0.01
2011 Ganske G, Slavcheva E, Van Ooyen A, Mokwa W, Schnakenberg U. Sputtered platinum-iridium layers as electrode material for functional electrostimulation Thin Solid Films. 519: 3965-3970. DOI: 10.1016/j.tsf.2011.01.344  0.01
2011 Van Ooyen A, Ulrich C, Schnakenberg U. Pulse-clamp method applied to SIROF stimulation electrodes Sensors and Actuators, B: Chemical. 154: 150-154. DOI: 10.1016/j.snb.2009.12.015  0.01
2010 Verwaal R, Jiang Y, Wang J, Daran JM, Sandmann G, van den Berg JA, van Ooyen AJ. Heterologous carotenoid production in Saccharomyces cerevisiae induces the pleiotropic drug resistance stress response. Yeast (Chichester, England). 27: 983-98. PMID 20632327 DOI: 10.1002/yea.1807  0.01
2010 Malleo D, Nevill JT, van Ooyen A, Schnakenberg U, Lee LP, Morgan H. Note: Characterization of electrode materials for dielectric spectroscopy. The Review of Scientific Instruments. 81: 016104. PMID 20113135 DOI: 10.1063/1.3284516  0.01
2010 Schoofs A, Niederegger S, van Ooyen A, Heinzel HG, Spiess R. The brain can eat: establishing the existence of a central pattern generator for feeding in third instar larvae of Drosophila virilis and Drosophila melanogaster. Journal of Insect Physiology. 56: 695-705. PMID 20074578 DOI: 10.1016/j.jinsphys.2009.12.008  0.01
2009 Eick S, Wallys J, Hofmann B, van Ooyen A, Schnakenberg U, Ingebrandt S, Offenhäusser A. Iridium oxide microelectrode arrays for in vitro stimulation of individual rat neurons from dissociated cultures. Frontiers in Neuroengineering. 2: 16. PMID 19949459 DOI: 10.3389/neuro.16.016.2009  0.01
2009 Van Ooyen A, Topalov G, Ganske G, Mokwa W, Schnakenberg U. Iridium oxide deposited by pulsed dc-sputtering for stimulation electrodes Journal of Micromechanics and Microengineering. 19. DOI: 10.1088/0960-1317/19/7/074009  0.01
2009 van Ooyen A, Zagolla VG, Ulrich C, Schnakenberg U. SIROF stimulation electrode evaluation using the pulse-clamp method Procedia Chemistry. 1: 269-272. DOI: 10.1016/j.proche.2009.07.067  0.01
2008 Kuzina V, Ramírez-Medina H, Visser H, van Ooyen AJ, Cerdá-Olmedo E, van den Berg JA. Genes involved in carotene synthesis and mating in Blakeslea trispora. Current Genetics. 54: 143-52. PMID 18677485 DOI: 10.1007/s00294-008-0206-x  0.01
2008 Mazinani BA, Waberski TD, van Ooyen A, Walter P. Prediction of visual evoked potentials at any surface location from a set of three recording electrodes. Documenta Ophthalmologica. Advances in Ophthalmology. 116: 207-16. PMID 17912566 DOI: 10.1007/s10633-007-9083-8  0.01
2007 Verwaal R, Wang J, Meijnen JP, Visser H, Sandmann G, van den Berg JA, van Ooyen AJ. High-level production of beta-carotene in Saccharomyces cerevisiae by successive transformation with carotenogenic genes from Xanthophyllomyces dendrorhous. Applied and Environmental Microbiology. 73: 4342-50. PMID 17496128 DOI: 10.1128/AEM.02759-06  0.01
2007 Pel HJ, de Winde JH, Archer DB, Dyer PS, Hofmann G, Schaap PJ, Turner G, de Vries RP, Albang R, Albermann K, Andersen MR, Bendtsen JD, Benen JA, van den Berg M, Breestraat S, ... ... van Ooyen AJ, et al. Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88. Nature Biotechnology. 25: 221-31. PMID 17259976 DOI: 10.1038/nbt1282  0.01
2007 Krottje JK, van Ooyen A. A mathematical framework for modeling axon guidance. Bulletin of Mathematical Biology. 69: 3-31. PMID 17061055 DOI: 10.1007/s11538-006-9142-4  0.01
2007 Van Ooyen A, Wessling B, Slavcheva E, Schnakenberg U. Evaluation of SIROF microelectrodes for single neuron stimulation in biohybrid circuits Transducers and Eurosensors '07 - 4th International Conference On Solid-State Sensors, Actuators and Microsystems. 1227-1230. DOI: 10.1109/SENSOR.2007.4300358  0.01
2006 Wessling B, van Ooyen A, Mokwa W, Schnakenberg U. Iridium sputtered at varying pressures and target-substrate-distances evaluated for use as stimulation electrode material. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 3353-6. PMID 17945769 DOI: 10.1109/IEMBS.2006.260541  0.01
2006 van Ooyen AJ, Dekker P, Huang M, Olsthoorn MM, Jacobs DI, Colussi PA, Taron CH. Heterologous protein production in the yeast Kluyveromyces lactis. Fems Yeast Research. 6: 381-92. PMID 16630278 DOI: 10.1111/j.1567-1364.2006.00049.x  0.01
2005 Jalving R, Godefrooij J, Veen WJ, van Ooyen AJ, Schaap PJ. Characterisation of the Aspergillus niger dapB gene, which encodes a novel fungal type IV dipeptidyl aminopeptidase. Molecular Genetics and Genomics : Mgg. 273: 319-25. PMID 15812650 DOI: 10.1007/s00438-005-1134-9  0.01
2005 Basten DEJW, Moers APHA, Van Ooyen AJJ, Schaap PJ. Characterisation of Aspergillus niger prolyl aminopeptidase Molecular Genetics and Genomics. 272: 673-679. PMID 15654623 DOI: 10.1007/s00438-004-1094-5  0.01
2005 Van Ooyen A. Competition in neurite outgrowth and the development of nerve connections. Progress in Brain Research. 147: 81-99. PMID 15581699 DOI: 10.1016/S0079-6123(04)47007-1  0.01
2004 Hasper AA, Trindade LM, van der Veen D, van Ooyen AJ, de Graaff LH. Functional analysis of the transcriptional activator XlnR from Aspergillus niger. Microbiology (Reading, England). 150: 1367-75. PMID 15133098  0.01
2003 Visser H, van Ooyen AJ, Verdoes JC. Metabolic engineering of the astaxanthin-biosynthetic pathway of Xanthophyllomyces dendrorhous. Fems Yeast Research. 4: 221-31. PMID 14654426 DOI: 10.1016/S1567-1356(03)00158-2  0.01
2003 Verdoes JC, Sandmann G, Visser H, Diaz M, van Mossel M, van Ooyen AJ. Metabolic engineering of the carotenoid biosynthetic pathway in the yeast Xanthophyllomyces dendrorhous (Phaffia rhodozyma). Applied and Environmental Microbiology. 69: 3728-38. PMID 12839738 DOI: 10.1128/AEM.69.7.3728-3738.2003  0.01
2002 Visser H, Weijers CAGM, Van Ooyen AJJ, Verdoes JC. Cloning, characterization and heterologous expression of epoxide hydrolase-encoding cDNA sequences from yeasts belonging to the genera Rhodotorula and Rhodosporidium Biotechnology Letters. 24: 1687-1694. DOI: 10.1023/A:1020613803342  0.01
2000 van der Vlugt-Bergmans CJ, Meeuwsen PJ, Voragen AG, van Ooyen AJ. Endo-xylogalacturonan hydrolase, a novel pectinolytic enzyme. Applied and Environmental Microbiology. 66: 36-41. PMID 10618200  0.01
2000 Verdoes JC, Van Ooyen AJJ. Codon usage in Xanthophyllomyces dendrorhous (formerly Phaffia rhodozyma) Biotechnology Letters. 22: 9-13. DOI: 10.1023/A:1005695101331  0.01
1999 Hentschel HG, van Ooyen A. Models of axon guidance and bundling during development. Proceedings. Biological Sciences / the Royal Society. 266: 2231-8. PMID 10649638 DOI: 10.1098/rspb.1999.0913  0.01
1999 Verdoes JC, Krubasik KP, Sandmann G, van Ooyen AJ. Isolation and functional characterisation of a novel type of carotenoid biosynthetic gene from Xanthophyllomyces dendrorhous. Molecular & General Genetics : Mgg. 262: 453-61. PMID 10589832 DOI: 10.1007/s004380051105  0.01
1999 Cazemier AE, Verdoes JC, Op den Camp HJ, Hackstein JH, van Ooyen AJ. A beta-1,4-endoglucanase-encoding gene from Cellulomonas pachnodae. Applied Microbiology and Biotechnology. 52: 232-9. PMID 10499263 DOI: 10.1007/s002530051514  0.01
1999 Cazemier AE, Verdoes JC, van Ooyen AJ, Op den Camp HJ. Molecular and biochemical characterization of two xylanase-encoding genes from Cellulomonas pachnodae. Applied and Environmental Microbiology. 65: 4099-107. PMID 10473422  0.01
1999 Verdoes JC, Misawa N, van Ooyen AJ. Cloning and characterization of the astaxanthin biosynthetic gene encoding phytoene desaturase of Xanthophyllomyces dendrorhous. Biotechnology and Bioengineering. 63: 750-5. PMID 10397832 DOI: 10.1002/(SICI)1097-0290(19990620)63:6<750::AID-BIT13>3.0.CO;2-7  0.01
1999 Van Der Vlugt-Bergmans CJB, Van Ooyen AJJ. Expression cloning in Kluyveromyces lactis Biotechnology Techniques. 13: 87-92. DOI: 10.1023/A:1008864118362  0.01
1999 Verdoes JC, Van Ooyen AJJ. Isolation of the isopentenyl diphosphate isomerase encoding gene of Phaffia rhodozyma; improved carotenoid production in Escherichia coli Acta Botanica Gallica. 146: 43-53.  0.01
1998 Wery J, Verdoes JC, Van Ooyen AJJ. Efficient transformation of the astaxanthin-producing yeast Phaffia rhodozyma Biotechnology Techniques. 12: 399-405. DOI: 10.1023/A:1008834600770  0.01
1997 Verdoes JC, Wery J, Boekhout T, Van Ooyen AJ. Molecular characterization of the glyceraldehyde-3-phosphate dehydrogenase gene of Phaffia rhodozyma. Yeast (Chichester, England). 13: 1231-42. PMID 9364747 DOI: 10.1002/(SICI)1097-0061(199710)13:13<1231::AID-YEA171>3.0.CO;2-Q  0.01
1997 Wery J, Gutker D, Renniers AC, Verdoes JC, van Ooyen AJ. High copy number integration into the ribosomal DNA of the yeast Phaffia rhodozyma. Gene. 184: 89-97. PMID 9016957 DOI: 10.1016/S0378-1119(96)00579-3  0.01
1996 Wery J, Dalderup MJ, Ter Linde J, Boekhout T, Van Ooyen AJ. Structural and phylogenetic analysis of the actin gene from the yeast Phaffia rhodozyma. Yeast (Chichester, England). 12: 641-51. PMID 8810038 DOI: 10.1002/(SICI)1097-0061(19960615)12:7<641::AID-YEA952>3.0.CO;2-2  0.01
1996 Swaving J, Van Leest W, Van Ooyen AJJ, De Bont JAM. Electrotransformation of Xanthobacter autotrophicus GJ10 and other Xanthobacter strains Journal of Microbiological Methods. 25: 343-348. DOI: 10.1016/0167-7012(96)00007-3  0.01
1995 Verwoerd TC, van Paridon PA, van Ooyen AJ, van Lent JW, Hoekema A, Pen J. Stable accumulation of Aspergillus niger phytase in transgenic tobacco leaves. Plant Physiology. 109: 1199-205. PMID 8539288  0.01
1995 Swaving J, Weijers CA, van Ooyen AJ, de Bont JA. Complementation of Xanthobacter Py2 mutants defective in epoxyalkane degradation, and expression and nucleotide sequence of the complementing DNA fragment. Microbiology (Reading, England). 141: 477-84. PMID 7704278  0.01
1993 Dijkshoorn L, van Dalen R, van Ooyen A, Bijl D, Tjernberg I, Michel MF, Horrevorts AM. Endemic acinetobacter in intensive care units: epidemiology and clinical impact. Journal of Clinical Pathology. 46: 533-6. PMID 8331175  0.01
1993 Swinkels BW, van Ooyen AJ, Bonekamp FJ. The yeast Kluyveromyces lactis as an efficient host for heterologous gene expression. Antonie Van Leeuwenhoek. 64: 187-201. PMID 8092859 DOI: 10.1007/BF00873027  0.01
1993 Pen J, Verwoerd TC, Van Paridon PA, Beudeker RF, Van Den Eizen PJM, Geerse K, Van Der Klis JD, Versteegh HAJ, Van Ooyen AJJ, Hoekema A. Phytase-containing transgenic seeds as a novel feed additive for improved phosphorus utilization Nature Biotechnology. 11: 811-814. DOI: 10.1038/nbt0793-811  0.01
1993 Hart Ht, Sandbrink JM, Csikos I, van Ooyen A, van Brederode J. The allopolyploid origin of Sedum rupestre subsp. rupestre (Crassulaceae) Plant Systematics and Evolution. 184: 195-206. DOI: 10.1007/BF00937435  0.01
1992 Rademakers LH, Schuurman HJ, de Frankrijker JF, Van Ooyen A. Cellular composition of germinal centers in lymph nodes after HIV-1 infection: evidence for an inadequate support of germinal center B lymphocytes by follicular dendritic cells. Clinical Immunology and Immunopathology. 62: 148-59. PMID 1730153 DOI: 10.1016/0090-1229(92)90067-X  0.01
1992 Pen J, van Ooyen AJ, van den Elzen PJ, Rietveld K, Hoekema A. Direct screening for high-level expression of an introduced alpha-amylase gene in plants. Plant Molecular Biology. 18: 1133-9. PMID 1600149 DOI: 10.1007/BF00047716  0.01
1992 Pen J, Molendijk L, Quax WJ, Sijmons PC, van Ooyen AJ, van den Elzen PJ, Rietveld K, Hoekema A. Production of active Bacillus licheniformis alpha-amylase in tobacco and its application in starch liquefaction. Bio/Technology (Nature Publishing Company). 10: 292-6. PMID 1368101 DOI: 10.1038/nbt0392-292  0.01
1992 Pen J, van Ooyen AJJ, van den Elzen PJM, Quax WJ, Hoekema A. Efficient production of active industrial enzymes in plants Industrial Crops and Products. 1: 241-250. DOI: 10.1016/0926-6690(92)90025-Q  0.01
1992 Pen J, Molendijk L, Quax WJ, Sijmons PC, Van Ooyen AJJ, Van Den Elzen PJM, Rietveld K, Hoekema A. Production of active Bacillus licheniformis alpha-amylse in tobacco and its application in starch liquefaction Nature Biotechnology. 10: 292-296.  0.01
1990 Dijkshoorn L, Van Ooyen A, Hop WC, Theuns M, Michel MF. Comparison of clinical Acinetobacter strains using a carbon source growth assay. Epidemiology and Infection. 104: 443-53. PMID 2347384  0.01
1990 van Ooyen A, Hogeweg P. Iterative character weighting based on mutation frequency: a new method for constructing phyletic trees. Journal of Molecular Evolution. 31: 330-42. PMID 2124280 DOI: 10.1007/BF02101127  0.01
1990 Nusse R, Theunissen H, Wagenaar E, Rijsewijk F, Gennissen A, Otte A, Schuuring E, van Ooyen A. The Wnt-1 (int-1) oncogene promoter and its mechanism of activation by insertion of proviral DNA of the mouse mammary tumor virus. Molecular and Cellular Biology. 10: 4170-9. PMID 1695322  0.01
1990 van den Berg JA, van der Laken KJ, van Ooyen AJ, Renniers TC, Rietveld K, Schaap A, Brake AJ, Bishop RJ, Schultz K, Moyer D. Kluyveromyces as a host for heterologous gene expression: expression and secretion of prochymosin. Bio/Technology (Nature Publishing Company). 8: 135-9. PMID 1366557  0.01
1990 Rademakers LHPM, Schuurman HJ, de Frankrijker JF, Van Ooyen A. Ultrastructural analysis of germinal centres in lymph nodes after HIV-1 infection Micron and Microscopica Acta. 21: 267-268.  0.01
1986 Rijsewijk FA, van Lohuizen M, van Ooyen A, Nusse R. Construction of a retroviral cDNA version of the int-1 mammary oncogene and its expression in vitro. Nucleic Acids Research. 14: 693-702. PMID 3003692  0.01
1985 van Ooyen A, Kwee V, Nusse R. The nucleotide sequence of the human int-1 mammary oncogene; evolutionary conservation of coding and non-coding sequences. The Embo Journal. 4: 2905-9. PMID 2998762  0.01
1985 Nusse R, van Ooyen A, Rijsewijk F, van Lohuizen M, Schuuring E, van't Veer L. Retroviral insertional mutagenesis in murine mammary cancer. Proceedings of the Royal Society of London. Series B, Biological Sciences. 226: 3-13. PMID 2866522  0.01
1984 van 't Veer LJ, van Kessel AG, van Heerikhuizen H, van Ooyen A, Nusse R. Molecular cloning and chromosomal assignment of the human homolog of int-1, a mouse gene implicated in mammary tumorigenesis. Molecular and Cellular Biology. 4: 2532-4. PMID 6513929  0.01
1984 van den Berg FM, van Ooyen AJ, Volkers H, Walboomers JM. Heterogeneity in subregions of the terminal repeats of herpes simplex virus type 2 DNA. Intervirology. 21: 96-103. PMID 6321396  0.01
1984 Nusse R, van Ooyen A, Cox D, Fung YK, Varmus H. Mode of proviral activation of a putative mammary oncogene (int-1) on mouse chromosome 15. Nature. 307: 131-6. PMID 6318122 DOI: 10.1038/307131a0  0.01
1984 van Ooyen A, Nusse R. Structure and nucleotide sequence of the putative mammary oncogene int-1; proviral insertions leave the protein-encoding domain intact. Cell. 39: 233-40. PMID 6091914 DOI: 10.1016/0092-8674(84)90209-5  0.01
1983 Michalides R, van Ooyen A, Nusse R. Mouse mammary tumor virus expression and mammary tumor development. Current Topics in Microbiology and Immunology. 106: 57-78. PMID 6315307  0.01
1983 Hynes N, van Ooyen AJ, Kennedy N, Herrlich P, Ponta H, Groner B. Subfragments of the large terminal repeat cause glucocorticoid-responsive expression of mouse mammary tumor virus and of an adjacent gene. Proceedings of the National Academy of Sciences of the United States of America. 80: 3637-41. PMID 6304728  0.01
1983 Dierks P, van Ooyen A, Cochran MD, Dobkin C, Reiser J, Weissmann C. Three regions upstream from the cap site are required for efficient and accurate transcription of the rabbit beta-globin gene in mouse 3T6 cells. Cell. 32: 695-706. PMID 6299573 DOI: 10.1016/0092-8674(83)90055-7  0.01
1983 van Ooyen AJ, Michalides RJ, Nusse R. Structural analysis of a 1.7-kilobase mouse mammary tumor virus-specific RNA. Journal of Virology. 46: 362-70. PMID 6188860  0.01
1982 Kennedy N, Knedlitschek G, Groner B, Hynes NE, Herrlich P, Michalides R, van Ooyen AJ. Long terminal repeats of endogenous mouse mammary tumour virus contain a long open reading frame which extends into adjacent sequences. Nature. 295: 622-4. PMID 6276778 DOI: 10.1038/295622a0  0.01
1981 Dierks P, van Ooyen A, Mantei N, Weissmann C. DNA sequences preceding the rabbit beta-globin gene are required for formation in mouse L cells of beta-globin RNA with the correct 5' terminus. Proceedings of the National Academy of Sciences of the United States of America. 78: 1411-5. PMID 6262796  0.01
1980 Beggs JD, van den Berg J, van Ooyen A, Weissmann C. Abnormal expression of chromosomal rabbit beta-globin gene in Saccharomyces cerevisiae. Nature. 283: 835-40. PMID 6987524  0.01
1979 van Ooyen A, van den Berg J, Mantei N, Weissmann C. Comparison of total sequence of a cloned rabbit beta-globin gene and its flanking regions with a homologous mouse sequence. Science (New York, N.Y.). 206: 337-44. PMID 482942  0.01
1978 van den Berg J, van Ooyen A, Mantei N, Schamböck A, Grosveld G, Flavell RA, Weissmann C. Comparison of cloned rabbit and mouse beta-globin genes showing strong evolutionary divergence of two homologous pairs of introns. Nature. 276: 37-44. PMID 264241 DOI: 10.1038/276037a0  0.01
1977 Oostra BA, van Ooyen AJ, Gruber M. In vitro transcription of three different ribosomal RNA cistrons of E. coli; heterogeneity of control regions. Molecular & General Genetics : Mgg. 152: 1-6. PMID 325380 DOI: 10.1007/BF00264932  0.01
1976 Oostra BA, Zantinge B, van Goor AL, van Ooyen AJ, Gruber M. A rapid and sensitive determination of bacterial rRNA by means of hybridization-competition. Analytical Biochemistry. 74: 496-502. PMID 786069 DOI: 10.1016/0003-2697(76)90231-1  0.01
1975 Van Ooyen AJ, De Boer HA, Geert AB, Gruber M. Ribosomal and non-ribosomal RNA synthesis in vitro. Biochimica Et Biophysica Acta. 395: 128-35. PMID 1095071 DOI: 10.1016/0005-2787(75)90151-3  0.01
1975 van Ooyen AJ, de Boer HA, Ab G, Gruber M. Specific inhibition of ribosomal RNA synthesis in vitro by guanosine 3' diphosphate, 5' diphosphate. Nature. 254: 530-1. PMID 1091863 DOI: 10.1038/254530a0  0.01
1973 de Boer HA, van Ooyen AJ, Ab G, Gruber M. The role of messenger RNA and peptidyl-tRNA in the synthesis of the guanine nucleotides MS I and MS II by ribosomes in vivo. Febs Letters. 30: 335-8. PMID 4573439 DOI: 10.1016/0014-5793(73)80682-9  0.01
1970 Clements AN, Page J, Borck K, Van Ooyen AJ. Trehalases of the fleshfly Sarcophaga barbata. Journal of Insect Physiology. 16: 1389-404. PMID 5432383 DOI: 10.1016/0022-1910(70)90138-1  0.01
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