Jay Parrish - Publications

Affiliations: 
University of Washington, Seattle, Seattle, WA 

55 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Baccarella A, Williams CR, Parrish JZ, Kim CC. Empirical assessment of the impact of sample number and read depth on RNA-Seq analysis workflow performance. Bmc Bioinformatics. 19: 423. PMID 30428853 DOI: 10.1186/s12859-018-2445-2  0.64
2018 Yan C, Wang F, Peng Y, Williams CR, Jenkins B, Wildonger J, Kim HJ, Perr JB, Vaughan JC, Kern ME, Falvo MR, O'Brien ET, Superfine R, Tuthill JC, Xiang Y, ... ... Parrish JZ, et al. Microtubule Acetylation Is Required for Mechanosensation in Drosophila. Cell Reports. 25: 1051-1065.e6. PMID 30355484 DOI: 10.1016/j.celrep.2018.09.075  0.64
2018 Hoyer N, Zielke P, Hu C, Petersen M, Sauter K, Scharrenberg R, Peng Y, Kim CC, Han C, Parrish JZ, Soba P. Ret and Substrate-Derived TGF-β Maverick Regulate Space-Filling Dendrite Growth in Drosophila Sensory Neurons. Cell Reports. 24: 2261-2272.e5. PMID 30157422 DOI: 10.1016/j.celrep.2018.07.092  0.64
2018 Utashiro N, Williams CR, Parrish JZ, Emoto K. Prior activity of olfactory receptor neurons is required for proper sensory processing and behavior in Drosophila larvae. Scientific Reports. 8: 8580. PMID 29872087 DOI: 10.1038/s41598-018-26825-3  0.64
2017 Boiko N, Medrano G, Montano E, Jiang N, Williams CR, Madungwe NB, Bopassa JC, Kim CC, Parrish JZ, Hargreaves KM, Stockand JD, Eaton BA. TrpA1 activation in peripheral sensory neurons underlies the ionic basis of pain hypersensitivity in response to vinca alkaloids. Plos One. 12: e0186888. PMID 29084244 DOI: 10.1371/journal.pone.0186888  0.64
2017 Williams CR, Baccarella A, Parrish JZ, Kim CC. Empirical assessment of analysis workflows for differential expression analysis of human samples using RNA-Seq. Bmc Bioinformatics. 18: 38. PMID 28095772 DOI: 10.1186/s12859-016-1457-z  0.64
2016 Link JO, Taylor JG, Xu L, Mitchell M, Guo H, Liu H, Kato D, Kirschberg T, Sun J, Squires N, Parrish J, Kellar T, Yang ZY, Yang C, Matles M, et al. Correction to Discovery of Ledipasvir (GS-5885): A Potent, Once-Daily Oral NS5A Inhibitor for the Treatment of Hepatitis C Virus Infection. Journal of Medicinal Chemistry. PMID 27529494 DOI: 10.1021/acs.jmedchem.6b01043  0.32
2016 Williams CR, Baccarella A, Parrish JZ, Kim CC. Trimming of sequence reads alters RNA-Seq gene expression estimates. Bmc Bioinformatics. 17: 103. PMID 26911985 DOI: 10.1186/s12859-016-0956-2  0.64
2016 Meltzer S, Yadav S, Lee J, Soba P, Younger SH, Jin P, Zhang W, Parrish J, Jan LY, Jan YN. Epidermis-Derived Semaphorin Promotes Dendrite Self-Avoidance by Regulating Dendrite-Substrate Adhesion in Drosophila Sensory Neurons. Neuron. PMID 26853303 DOI: 10.1016/j.neuron.2016.01.020  0.64
2016 Lin WY, Williams CR, Yan C, Parrish JZ. Functions of the SLC36 transporter Pathetic in growth control. Fly. 0. PMID 26735916 DOI: 10.1080/19336934.2015.1129089  0.64
2015 Peng Y, Lee J, Rowland K, Wen Y, Hua H, Carlson N, Lavania S, Parrish JZ, Kim MD. Regulation of dendrite growth and maintenance by exocytosis. Journal of Cell Science. PMID 26483382 DOI: 10.1242/jcs.174771  0.64
2015 Ding Y, Chang LC, Wang X, Guilloux JP, Parrish J, Oh H, French BJ, Lewis DA, Tseng GC, Sibille E. Molecular and Genetic Characterization of Depression: Overlap with other Psychiatric Disorders and Aging. Molecular Neuropsychiatry. 1: 1-12. PMID 26213687  0.44
2015 Lin WY, Williams C, Yan C, Koledachkina T, Luedke K, Dalton J, Bloomsburg S, Morrison N, Duncan KE, Kim CC, Parrish JZ. The SLC36 transporter Pathetic is required for extreme dendrite growth in Drosophila sensory neurons. Genes & Development. 29: 1120-35. PMID 26063572 DOI: 10.1101/gad.259119.115  0.64
2015 Jiang N, Parrish JZ. Muscles get dendrites into shape. Developmental Cell. 33: 369-70. PMID 26017767 DOI: 10.1016/j.devcel.2015.05.006  0.64
2015 Mackman RL, Sangi M, Sperandio D, Parrish JP, Eisenberg E, Perron M, Hui H, Zhang L, Siegel D, Yang H, Saunders O, Boojamra C, Lee G, Samuel D, Babaoglu K, et al. Discovery of an oral respiratory syncytial virus (RSV) fusion inhibitor (GS-5806) and clinical proof of concept in a human RSV challenge study. Journal of Medicinal Chemistry. 58: 1630-43. PMID 25574686 DOI: 10.1021/jm5017768  0.4
2015 Lee J, Peng Y, Lin WY, Parrish JZ. Coordinate control of terminal dendrite patterning and dynamics by the membrane protein Raw. Development (Cambridge, England). 142: 162-73. PMID 25480915 DOI: 10.1242/dev.113423  0.64
2015 Dogan S, Vargovic P, Oliveira R, Belser LE, Kaya A, Moura A, Sutovsky P, Parrish J, Topper E, Memili E. Sperm protamine-status correlates to the fertility of breeding bulls Biology of Reproduction. 92. DOI: 10.1095/biolreprod.114.124255  0.36
2014 Lu Z, Parrish JD, Yoon TP. [3+2] Photooxygenation of aryl cylopropanes via visible light photocatalysis. Tetrahedron. 70: 4270-4278. PMID 25170179 DOI: 10.1016/j.tet.2014.02.045  0.36
2014 Jiang N, Soba P, Parker E, Kim CC, Parrish JZ. The microRNA bantam regulates a developmental transition in epithelial cells that restricts sensory dendrite growth. Development (Cambridge, England). 141: 2657-68. PMID 24924190 DOI: 10.1242/dev.107573  0.64
2014 Parrish JZ, Kim CC, Tang L, Bergquist S, Wang T, Derisi JL, Jan LY, Jan YN, Davis GW. Krüppel mediates the selective rebalancing of ion channel expression. Neuron. 82: 537-44. PMID 24811378 DOI: 10.1016/j.neuron.2014.03.015  0.64
2014 Link JO, Taylor JG, Xu L, Mitchell M, Guo H, Liu H, Kato D, Kirschberg T, Sun J, Squires N, Parrish J, Keller T, Yang ZY, Yang C, Matles M, et al. Discovery of ledipasvir (GS-5885): a potent, once-daily oral NS5A inhibitor for the treatment of hepatitis C virus infection. Journal of Medicinal Chemistry. 57: 2033-46. PMID 24320933 DOI: 10.1021/jm401499g  0.32
2014 Parrish JJ. Bovine in vitro fertilization: in vitro oocyte maturation and sperm capacitation with heparin. Theriogenology. 81: 67-73. PMID 24274411 DOI: 10.1016/j.theriogenology.2013.08.005  0.36
2013 Parrish JP, Lee SK, Boojamra CG, Hui H, Babusis D, Brown B, Shih IH, Feng JY, Ray AS, Mackman RL. Evaluation of 2'-α-fluorine modified nucleoside phosphonates as potential inhibitors of HCV polymerase. Bioorganic & Medicinal Chemistry Letters. 23: 3354-7. PMID 23639543 DOI: 10.1016/j.bmcl.2013.03.095  0.4
2013 Turner JG, Parrish JL, Zuiderveld L, Darr S, Hughes LF, Caspary DM, Idrezbegovic E, Canlon B. Acoustic experience alters the aged auditory system. Ear and Hearing. 34: 151-9. PMID 23086424 DOI: 10.1097/AUD.0b013e318269ca5b  0.6
2012 Cho A, Zhang L, Xu J, Babusis D, Butler T, Lee R, Saunders OL, Wang T, Parrish J, Perry J, Feng JY, Ray AS, Kim CU. Synthesis and characterization of 2'-C-Me branched C-nucleosides as HCV polymerase inhibitors. Bioorganic & Medicinal Chemistry Letters. 22: 4127-32. PMID 22578461 DOI: 10.1016/j.bmcl.2012.04.065  0.4
2012 Wolfe GM, Crounse JD, Parrish JD, St Clair JM, Beaver MR, Paulot F, Yoon TP, Wennberg PO, Keutsch FN. Photolysis, OH reactivity and ozone reactivity of a proxy for isoprene-derived hydroperoxyenals (HPALDs). Physical Chemistry Chemical Physics : Pccp. 14: 7276-86. PMID 22517221 DOI: 10.1039/c2cp40388a  0.36
2012 Parrish JD, Ischay MA, Lu Z, Guo S, Peters NR, Yoon TP. Endoperoxide synthesis by photocatalytic aerobic [2 + 2 + 2] cycloadditions. Organic Letters. 14: 1640-3. PMID 22372647 DOI: 10.1021/ol300428q  0.36
2011 Rispoli LA, Lawrence JL, Payton RR, Saxton AM, Schrock GE, Schrick FN, Middlebrooks BW, Dunlap JR, Parrish JJ, Edwards JL. Disparate consequences of heat stress exposure during meiotic maturation: embryo development after chemical activation vs fertilization of bovine oocytes. Reproduction (Cambridge, England). 142: 831-43. PMID 21994359 DOI: 10.1530/REP-11-0032  0.36
2011 Rahman MB, Vandaele L, Rijsselaere T, Maes D, Hoogewijs M, Frijters A, Noordman J, Granados A, Dernelle E, Shamsuddin M, Parrish JJ, Van Soom A. Scrotal insulation and its relationship to abnormal morphology, chromatin protamination and nuclear shape of spermatozoa in Holstein-Friesian and Belgian Blue bulls. Theriogenology. 76: 1246-57. PMID 21777969 DOI: 10.1016/j.theriogenology.2011.05.031  0.36
2011 Wen Y, Parrish JZ, He R, Zhai RG, Kim MD. Nmnat exerts neuroprotective effects in dendrites and axons. Molecular and Cellular Neurosciences. 48: 1-8. PMID 21596138 DOI: 10.1016/j.mcn.2011.05.002  0.64
2011 Murack PJ, Parrish J, Barry TP. Effects of progesterone on sperm motility in fathead minnow (Pimephales promelas). Aquatic Toxicology (Amsterdam, Netherlands). 104: 121-5. PMID 21569753 DOI: 10.1016/j.aquatox.2011.04.006  0.36
2011 Mesaros EF, Burke JP, Parrish JD, Dugan BJ, Anzalone AV, Angeles TS, Albom MS, Aimone LD, Quail MR, Wan W, Lu L, Huang Z, Ator MA, Ruggeri BA, Cheng M, et al. Novel 2,3,4,5-tetrahydro-benzo[d]azepine derivatives of 2,4-diaminopyrimidine, selective and orally bioavailable ALK inhibitors with antitumor efficacy in ALCL mouse models. Bioorganic & Medicinal Chemistry Letters. 21: 463-6. PMID 21074994 DOI: 10.1016/j.bmcl.2010.10.115  0.36
2010 Khatib H, Monson RL, Huang W, Khatib R, Schutzkus V, Khateeb H, Parrish JJ. Short communication: Validation of in vitro fertility genes in a Holstein bull population. Journal of Dairy Science. 93: 2244-9. PMID 20412940 DOI: 10.3168/jds.2009-2805  0.36
2010 Hughes LF, Turner JG, Parrish JL, Caspary DM. Processing of broadband stimuli across A1 layers in young and aged rats. Hearing Research. 264: 79-85. PMID 19772906 DOI: 10.1016/j.heares.2009.09.005  0.6
2010 Zhang M, Parrish JR, Cai P. Control of end user polymer properties in polymerization processes Aiche Annual Meeting, Conference Proceedings 0.36
2009 Parrish JZ, Xu P, Kim CC, Jan LY, Jan YN. The microRNA bantam functions in epithelial cells to regulate scaling growth of dendrite arbors in drosophila sensory neurons. Neuron. 63: 788-802. PMID 19778508 DOI: 10.1016/j.neuron.2009.08.006  0.64
2009 Wang H, Brozoski TJ, Turner JG, Ling L, Parrish JL, Hughes LF, Caspary DM. Plasticity at glycinergic synapses in dorsal cochlear nucleus of rats with behavioral evidence of tinnitus. Neuroscience. 164: 747-59. PMID 19699270 DOI: 10.1016/j.neuroscience.2009.08.026  0.6
2009 Crimmins MT, Ellis JM, Emmitte KA, Haile PA, McDougall PJ, Parrish JD, Zuccarello JL. Enantioselective total synthesis of brevetoxin A: unified strategy for the B, E, G, and J subunits. Chemistry (Weinheim An Der Bergstrasse, Germany). 15: 9223-34. PMID 19650091 DOI: 10.1002/chem.200900776  0.36
2009 Uzun A, Rodriguez-Osorio N, Kaya A, Wang H, Parrish JJ, Ilyin VA, Memili E. Functional genomics of HMGN3a and SMARCAL1 in early mammalian embryogenesis. Bmc Genomics. 10: 183. PMID 19393058 DOI: 10.1186/1471-2164-10-183  0.36
2009 Wang H, Turner JG, Ling L, Parrish JL, Hughes LF, Caspary DM. Age-related changes in glycine receptor subunit composition and binding in dorsal cochlear nucleus. Neuroscience. 160: 227-39. PMID 19217931 DOI: 10.1016/j.neuroscience.2009.01.079  0.6
2009 Boojamra CG, Parrish JP, Sperandio D, Gao Y, Petrakovsky OV, Lee SK, Markevitch DY, Vela JE, Laflamme G, Chen JM, Ray AS, Barron AC, Sparacino ML, Desai MC, Kim CU, et al. Design, synthesis, and anti-HIV activity of 4'-modified carbocyclic nucleoside phosphonate reverse transcriptase inhibitors. Bioorganic & Medicinal Chemistry. 17: 1739-46. PMID 19179082 DOI: 10.1016/j.bmc.2008.12.028  0.4
2009 Crimmins MT, Zuccarello JL, Ellis JM, McDougall PJ, Haile PA, Parrish JD, Emmitte KA. Total synthesis of brevetoxin A. Organic Letters. 11: 489-92. PMID 19099481 DOI: 10.1021/ol802710u  0.36
2007 Mackman RL, Zhang L, Prasad V, Boojamra CG, Chen J, Douglas J, Grant D, Laflamme G, Hui H, Kim CU, Parrish J, Stoycheva AD, Swaminathan S, Wang K, Cihlar T. Synthesis and anti-HIV activity of cyclic pyrimidine phosphonomethoxy nucleosides and their prodrugs: a comparison of phosphonates and corresponding nucleosides. Nucleosides, Nucleotides & Nucleic Acids. 26: 573-7. PMID 18066858 DOI: 10.1080/15257770701490126  0.4
2007 Mackman RL, Zhang L, Prasad V, Boojamra CG, Douglas J, Grant D, Hui H, Kim CU, Laflamme G, Parrish J, Stoycheva AD, Swaminathan S, Wang K, Cihlar T. Synthesis, anti-HIV activity, and resistance profile of thymidine phosphonomethoxy nucleosides and their bis-isopropyloxymethylcarbonyl (bisPOC) prodrugs. Bioorganic & Medicinal Chemistry. 15: 5519-28. PMID 17562366 DOI: 10.1016/j.bmc.2007.05.047  0.4
2007 Parrish JZ, Emoto K, Jan LY, Jan YN. Polycomb genes interact with the tumor suppressor genes hippo and warts in the maintenance of Drosophila sensory neuron dendrites. Genes & Development. 21: 956-72. PMID 17437999 DOI: 10.1101/gad.1514507  0.64
2007 Parrish JZ, Emoto K, Kim MD, Jan YN. Mechanisms that regulate establishment, maintenance, and remodeling of dendritic fields. Annual Review of Neuroscience. 30: 399-423. PMID 17378766 DOI: 10.1146/annurev.neuro.29.051605.112907  0.64
2006 Emoto K, Parrish JZ, Jan LY, Jan YN. The tumour suppressor Hippo acts with the NDR kinases in dendritic tiling and maintenance. Nature. 443: 210-3. PMID 16906135 DOI: 10.1038/nature05090  0.64
2006 Parrish JZ, Kim MD, Jan LY, Jan YN. Genome-wide analyses identify transcription factors required for proper morphogenesis of Drosophila sensory neuron dendrites. Genes & Development. 20: 820-35. PMID 16547170 DOI: 10.1101/gad.1391006  0.64
2006 Parrish JZ, Xue D. Cuts can kill: the roles of apoptotic nucleases in cell death and animal development. Chromosoma. 115: 89-97. PMID 16418867 DOI: 10.1007/s00412-005-0038-0  0.64
2005 Zheng L, Zhou M, Chai Q, Parrish J, Xue D, Patrick SM, Turchi JJ, Yannone SM, Chen D, Shen B. Novel function of the flap endonuclease 1 complex in processing stalled DNA replication forks. Embo Reports. 6: 83-9. PMID 15592449 DOI: 10.1038/sj.embor.7400313  0.64
2003 Parrish JZ, Yang C, Shen B, Xue D. CRN-1, a Caenorhabditis elegans FEN-1 homologue, cooperates with CPS-6/EndoG to promote apoptotic DNA degradation. The Embo Journal. 22: 3451-60. PMID 12840007 DOI: 10.1093/emboj/cdg320  0.64
2003 Parrish JZ, Xue D. Functional genomic analysis of apoptotic DNA degradation in C. elegans. Molecular Cell. 11: 987-96. PMID 12718884 DOI: 10.1016/S1097-2765(03)00095-9  0.64
2002 Parrish JP, Jung YC, Shin SI, Jung KW. Mild and efficient aryl-alkenyl coupling via Pd(II) catalysis in the presence of oxygen or Cu(II) oxidants. The Journal of Organic Chemistry. 67: 7127-30. PMID 12354008  0.6
2001 Parrish J, Li L, Klotz K, Ledwich D, Wang X, Xue D. Mitochondrial endonuclease G is important for apoptosis in C. elegans Nature. 412: 90-94. PMID 11452313 DOI: 10.1038/35083608  0.64
2000 Parrish J, Metters H, Chen L, Xue D. Demonstration of the in vivo interaction of key cell death regulators by structure-based design of second-site suppressors Proceedings of the National Academy of Sciences of the United States of America. 97: 11916-11921. PMID 11027303 DOI: 10.1073/pnas.210391597  0.64
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