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Carl Rothfels - Publications

Affiliations: 
Integrative Biology University of California, Berkeley, Berkeley, CA, United States 
Area:
Plant phylogenetics, polyploidy, fern evolution
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46/75 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Tribble CM, Alzate-Guarín F, Gándara E, Vartoumian A, Burleigh JG, Zenil-Ferguson R, Specht CD, Rothfels CJ. The rapid radiation of Bomarea (Alstroemeriaceae: Liliales), driven by the rise of the Andes. Evolution; International Journal of Organic Evolution. PMID 37831628 DOI: 10.1093/evolut/qpad184  0.706
2023 May MR, Rothfels CJ. Diversification models conflate likelihood and prior, and cannot be compared using conventional model-comparison tools. Systematic Biology. PMID 36897743 DOI: 10.1093/sysbio/syad010  0.609
2022 Tribble CM, May MR, Jackson-Gain A, Zenil-Ferguson R, Specht CD, Rothfels CJ. Unearthing modes of climatic adaptation in underground storage organs across Liliales. Systematic Biology. PMID 36380514 DOI: 10.1093/sysbio/syac070  0.681
2022 Iwanycki Ahlstrand N, Gopalakrishnan S, Vieira FG, Bieker VC, Meudt HM, Dunbar-Co S, Rothfels CJ, Martinez-Swatson KA, Maldonado C, Hassemer G, Shipunov A, Bowers MD, Gardner E, Xu M, Ghorbani A, et al. Travel Tales of a Worldwide Weed: Genomic Signatures of L. Reveal Distinct Genotypic Groups With Links to Colonial Trade Routes. Frontiers in Plant Science. 13: 838166. PMID 35755675 DOI: 10.3389/fpls.2022.838166  0.322
2022 Mehlferber EC, Song MJ, Pelaez JN, Jaenisch J, Coate JE, Koskella B, Rothfels CJ. Polyploidy and microbiome associations mediate similar responses to pathogens in Arabidopsis. Current Biology : Cb. PMID 35640622 DOI: 10.1016/j.cub.2022.05.015  0.696
2021 May MR, Contreras DL, Sundue MA, Nagalingum NS, Looy CV, Rothfels CJ. Inferring the Total-Evidence Timescale of Marattialean Fern Evolution in the Face of Model Sensitivity. Systematic Biology. PMID 33760075 DOI: 10.1093/sysbio/syab020  0.574
2021 Rothfels CJ. Polyploid phylogenetics. The New Phytologist. 230: 66-72. PMID 33491778 DOI: 10.1111/nph.17105  0.396
2021 Tribble CM, Martínez-Gómez J, Alzate-Guarín F, Rothfels CJ, Specht CD. Comparative transcriptomics of a monocotyledonous geophyte reveals shared molecular mechanisms of underground storage organ formation. Evolution & Development. e12369. PMID 33465278 DOI: 10.1111/ede.12369  0.75
2020 Hanušová K, Čertner M, Urfus T, Koutecký P, Košnar J, Rothfels CJ, Jarolímová V, Ptáček J, Ekrt L. Widespread co-occurrence of multiple ploidy levels in fragile ferns (Cystopteris fragilis complex; Cystopteridaceae) probably stems from similar ecology of cytotypes, their efficient dispersal and inter-ploidy hybridization. Annals of Botany. 123: 845-855. PMID 30541055 DOI: 10.1093/aob/mcy219  0.309
2019 Chery JG, Pace MR, Acevedo-Rodríguez P, Specht CD, Rothfels CJ. Modifications during Early Plant Development Promote the Evolution of Nature's Most Complex Woods. Current Biology : Cb. PMID 31839457 DOI: 10.1016/J.Cub.2019.11.003  0.641
2019 Bell D, Lin Q, Gerelle WK, Joya S, Chang Y, Taylor ZN, Rothfels CJ, Larsson A, Villarreal JC, Li FW, Pokorny L, Szövényi P, Crandall-Stotler B, DeGironimo L, Floyd SK, et al. Organellomic data sets confirm a cryptic consensus on (unrooted) land-plant relationships and provide new insights into bryophyte molecular evolution. American Journal of Botany. PMID 31814117 DOI: 10.1002/Ajb2.1397  0.437
2019 Chery JG, Acevedo-Rodríguez P, Rothfels CJ, Specht CD. Phylogeny of Paullinia L. (Paullinieae: Sapindaceae), a diverse genus of lianas with dynamic fruit evolution. Molecular Phylogenetics and Evolution. 140: 106577. PMID 31415869 DOI: 10.1016/J.Ympev.2019.106577  0.615
2018 Li FW, Brouwer P, Carretero-Paulet L, Cheng S, de Vries J, Delaux PM, Eily A, Koppers N, Kuo LY, Li Z, Simenc M, Small I, Wafula E, Angarita S, Barker MS, ... ... Rothfels CJ, et al. Fern genomes elucidate land plant evolution and cyanobacterial symbioses. Nature Plants. PMID 29967517 DOI: 10.1038/S41477-018-0188-8  0.661
2018 Mutte SK, Kato H, Rothfels C, Melkonian M, Wong GK, Weijers D. Origin and evolution of the nuclear auxin response system. Elife. 7. PMID 29580381 DOI: 10.7554/Elife.33399  0.431
2018 Freund FD, Freyman WA, Rothfels CJ. Inferring the evolutionary reduction of corm lobation in Isoëtes using Bayesian model-averaged ancestral state reconstruction. American Journal of Botany. 105: 275-286. PMID 29573405 DOI: 10.1002/ajb2.1024  0.405
2018 Song M, Kuo LY, Huiet L, Pryer KM, Rothfels CJ, Li FW. A novel chloroplast gene reported for flagellate plants. American Journal of Botany. 105: 117-121. PMID 29532931 DOI: 10.1002/ajb2.1010  0.694
2017 Dauphin B, Grant JR, Farrar DR, Rothfels CJ. Rapid allopolyploid radiation of moonwort ferns (Botrychium; Ophioglossaceae) revealed by PacBio sequencing of homologous and homeologous nuclear regions. Molecular Phylogenetics and Evolution. 120: 342-353. PMID 29242164 DOI: 10.1016/J.Ympev.2017.11.025  0.347
2017 Lang D, Ullrich KK, Murat F, Fuchs J, Jenkins J, Haas FB, Piednoel M, Gundlach H, Van Bel M, Meyberg R, Vives C, Morata J, Symeonidi A, Hiss M, Muchero W, ... ... Rothfels CJ, et al. The P. patens chromosome-scale assembly reveals moss genome structure and evolution. The Plant Journal : For Cell and Molecular Biology. PMID 29237241 DOI: 10.1111/Tpj.13801  0.361
2017 Bythell-Douglas R, Rothfels CJ, Stevenson DWD, Graham SW, Wong GK, Nelson DC, Bennett T. Evolution of strigolactone receptors by gradual neo-functionalization of KAI2 paralogues. Bmc Biology. 15: 52. PMID 28662667 DOI: 10.1186/S12915-017-0397-Z  0.307
2017 Johnson KL, Cassin AM, Lonsdale A, Wong GK, Soltis D, Miles NW, Melkonian M, Melkonian B, Deyholos MK, Leebens-Mack J, Rothfels CJ, Stevenson DW, Graham SW, Wang X, Wu S, et al. Insights into the evolution of hydroxyproline rich glycoproteins from 1000 plant transcriptomes. Plant Physiology. PMID 28446636 DOI: 10.1104/Pp.17.00295  0.386
2017 Han JD, Li X, Jiang CK, Wong GK, Rothfels CJ, Rao GY. Evolutionary Analysis of the LAFL Genes Involved in the Land Plant Seed Maturation Program. Frontiers in Plant Science. 8: 439. PMID 28421087 DOI: 10.3389/fpls.2017.00439  0.412
2016 Zhou XM, Rothfels CJ, Zhang L, He ZR, Le Péchon T, He H, Lu NT, Knapp R, Lorence D, He XJ, Gao XF, Zhang LB. A large-scale phylogeny of the lycophyte genus Selaginella (Selaginellaceae: Lycopodiopsida) based on plastid and nuclear loci. Cladistics : the International Journal of the Willi Hennig Society. 32: 360-389. PMID 34740298 DOI: 10.1111/cla.12136  0.317
2016 Jia Q, Li G, Köllner TG, Fu J, Chen X, Xiong W, Crandall-Stotler BJ, Bowman JL, Weston DJ, Zhang Y, Chen L, Xie Y, Li FW, Rothfels CJ, Larsson A, et al. Microbial-type terpene synthase genes occur widely in nonseed land plants, but not in seed plants. Proceedings of the National Academy of Sciences of the United States of America. 113: 12328-12333. PMID 27791023 DOI: 10.1073/Pnas.1607973113  0.431
2016 Grusz AL, Rothfels CJ, Schuettpelz E. Transcriptome sequencing reveals genome-wide variation in molecular evolutionary rate among ferns. Bmc Genomics. 17: 692. PMID 27577050 DOI: 10.1186/s12864-016-3034-2  0.38
2016 Lane TS, Rempe CS, Davitt J, Staton ME, Peng Y, Soltis DE, Melkonian M, Deyholos M, Leebens-Mack JH, Chase M, Rothfels CJ, Stevenson D, Graham SW, Yu J, Liu T, et al. Diversity of ABC transporter genes across the plant kingdom and their potential utility in biotechnology. Bmc Biotechnology. 16: 47. PMID 27245738 DOI: 10.1186/S12896-016-0277-6  0.304
2016 Stevenson SR, Kamisugi Y, Trinh CH, Schmutz J, Jenkins JW, Grimwood J, Muchero W, Tuskan GA, Rensing SA, Lang D, Reski R, Melkonian M, Rothfels CJ, Li FW, Larsson A, et al. Genetic analysis of Physcomitrella patens identifies ABSCISIC ACID NON-RESPONSIVE (ANR), a regulator of ABA responses unique to basal land plants and required for desiccation tolerance. The Plant Cell. PMID 27194706 DOI: 10.1105/Tpc.16.00091  0.322
2016 Devos N, Szövényi P, Weston DJ, Rothfels CJ, Johnson MG, Shaw AJ. Analyses of transcriptome sequences reveal multiple ancient large-scale duplication events in the ancestor of Sphagnopsida (Bryophyta). The New Phytologist. PMID 26900928 DOI: 10.1111/nph.13887  0.332
2015 Zhang L, Rothfels CJ, Ebihara A, Schuettpelz E, Le Péchon T, Kamau P, He H, Zhou XM, Prado J, Field A, Yatskievych G, Gao XF, Zhang LB. A global plastid phylogeny of the brake fern genus Pteris (Pteridaceae) and related genera in the Pteridoideae. Cladistics : the International Journal of the Willi Hennig Society. 31: 406-423. PMID 34772268 DOI: 10.1111/cla.12094  0.304
2015 Delaux PM, Radhakrishnan GV, Jayaraman D, Cheema J, Malbreil M, Volkening JD, Sekimoto H, Nishiyama T, Melkonian M, Pokorny L, Rothfels CJ, Sederoff HW, Stevenson DW, Surek B, Zhang Y, et al. Algal ancestor of land plants was preadapted for symbiosis. Proceedings of the National Academy of Sciences of the United States of America. PMID 26438870 DOI: 10.1073/Pnas.1515426112  0.423
2015 Li FW, Rothfels CJ, Melkonian M, Villarreal JC, Stevenson DW, Graham SW, Wong GK, Mathews S, Pryer KM. The origin and evolution of phototropins. Frontiers in Plant Science. 6: 637. PMID 26322073 DOI: 10.3389/Fpls.2015.00637  0.445
2015 Wolf PG, Sessa EB, Marchant DB, Li FW, Rothfels CJ, Sigel EM, Gitzendanner MA, Visger CJ, Banks JA, Soltis DE, Soltis PS, Pryer KM, Der JP. An Exploration into Fern Genome Space. Genome Biology and Evolution. 7: 2533-44. PMID 26311176 DOI: 10.1093/Gbe/Evv163  0.342
2015 Li FW, Melkonian M, Rothfels CJ, Villarreal JC, Stevenson DW, Graham SW, Wong GK, Pryer KM, Mathews S. Phytochrome diversity in green plants and the origin of canonical plant phytochromes. Nature Communications. 6: 7852. PMID 26215968 DOI: 10.1038/Ncomms8852  0.444
2015 Rothfels CJ, Johnson AK, Hovenkamp PH, Swofford DL, Roskam HC, Fraser-Jenkins CR, Windham MD, Pryer KM. Natural hybridization between genera that diverged from each other approximately 60 million years ago. The American Naturalist. 185: 433-42. PMID 25674696 DOI: 10.1086/679662  0.311
2015 Mayrose I, Zhan SH, Rothfels CJ, Arrigo N, Barker MS, Rieseberg LH, Otto SP. Methods for studying polyploid diversification and the dead end hypothesis: a reply to Soltis et al. (2014). The New Phytologist. 206: 27-35. PMID 25472785 DOI: 10.1111/Nph.13192  0.603
2014 Matasci N, Hung LH, Yan Z, Carpenter EJ, Wickett NJ, Mirarab S, Nguyen N, Warnow T, Ayyampalayam S, Barker M, Burleigh JG, Gitzendanner MA, Wafula E, Der JP, dePamphilis CW, ... ... Rothfels C, et al. Data access for the 1,000 Plants (1KP) project. Gigascience. 3: 17. PMID 25625010 DOI: 10.1186/2047-217X-3-17  0.667
2014 Wickett NJ, Mirarab S, Nguyen N, Warnow T, Carpenter E, Matasci N, Ayyampalayam S, Barker MS, Burleigh JG, Gitzendanner MA, Ruhfel BR, Wafula E, Der JP, Graham SW, Mathews S, ... ... Rothfels CJ, et al. Phylotranscriptomic analysis of the origin and early diversification of land plants. Proceedings of the National Academy of Sciences of the United States of America. 111: E4859-68. PMID 25355905 DOI: 10.1073/Pnas.1323926111  0.705
2014 Sessa EB, Banks JA, Barker MS, Der JP, Duffy AM, Graham SW, Hasebe M, Langdale J, Li FW, Marchant DB, Pryer KM, Rothfels CJ, Roux SJ, Salmi ML, Sigel EM, et al. Between two fern genomes. Gigascience. 3: 15. PMID 25324969 DOI: 10.1186/2047-217X-3-15  0.643
2014 Floyd SK, Ryan JG, Conway SJ, Brenner E, Burris KP, Burris JN, Chen T, Edger PP, Graham SW, Leebens-Mack JH, Pires JC, Rothfels CJ, Sigel EM, Stevenson DW, Neal Stewart C, et al. Origin of a novel regulatory module by duplication and degeneration of an ancient plant transcription factor. Molecular Phylogenetics and Evolution. 81: 159-73. PMID 25263420 DOI: 10.1016/J.Ympev.2014.06.017  0.388
2014 Bennett T, Brockington SF, Rothfels C, Graham SW, Stevenson D, Kutchan T, Rolf M, Thomas P, Wong GK, Leyser O, Glover BJ, Harrison CJ. Paralogous radiations of PIN proteins with multiple origins of noncanonical PIN structure. Molecular Biology and Evolution. 31: 2042-60. PMID 24758777 DOI: 10.1093/Molbev/Msu147  0.44
2014 Li FW, Villarreal JC, Kelly S, Rothfels CJ, Melkonian M, Frangedakis E, Ruhsam M, Sigel EM, Der JP, Pittermann J, Burge DO, Pokorny L, Larsson A, Chen T, Weststrand S, et al. Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns. Proceedings of the National Academy of Sciences of the United States of America. 111: 6672-7. PMID 24733898 DOI: 10.1073/Pnas.1319929111  0.336
2013 Rothfels CJ, Larsson A, Li FW, Sigel EM, Huiet L, Burge DO, Ruhsam M, Graham SW, Stevenson DW, Wong GK, Korall P, Pryer KM. Transcriptome-mining for single-copy nuclear markers in ferns. Plos One. 8: e76957. PMID 24116189 DOI: 10.1371/Journal.Pone.0076957  0.411
2011 Mayrose I, Zhan SH, Rothfels CJ, Magnuson-Ford K, Barker MS, Rieseberg LH, Otto SP. Recently formed polyploid plants diversify at lower rates. Science (New York, N.Y.). 333: 1257. PMID 21852456 DOI: 10.1126/Science.1207205  0.733
2008 Rothfels CJ, Windham MD, Grusz AL, Gastony GJ, Pryer KM. Toward a monophyletic Notholaena (Pteridaceae): Resolving patterns of evolutionary convergence in xeric-adapted ferns Taxon. 57: 712-724. DOI: 10.1002/Tax.573005  0.359
2004 Rothfels C. Significant vascular plant records from the Hamilton Area, Ontario Canadian Field-Naturalist. 118: 612-615. DOI: 10.22621/Cfn.V118I4.68  0.311
2002 Rothfels CJ, Beaton LL, Dudley SA. The effects of salt, manganese, and density on life history traits in Hesperis matronalis L. from oldfield and roadside populations Canadian Journal of Botany. 80: 131-139. DOI: 10.1139/b01-142  0.331
2001 Johnson MT, Rothfels CJ. The establishment and proliferation of the rare exotic plant, Lythrum hyssopifolia, Hyssop-leaved Loosestrife, at a pond in Guelph, Ontario Canadian Field-Naturalist. 115: 229-233.  0.351
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2013 Rothfels CJ, Windham MD, Pryer KM. A plastid phylogeny of the cosmopolitan fern family cystopteridaceae (Polypodiopsida) Systematic Botany. 38: 295-306. DOI: 10.1600/036364413X666787  0.293
2016 Pryer KM, Huiet L, Li FW, Rothfels CJ, Schuettpelz E. Maidenhair ferns, adiantum, are indeed monophyletic and sister to shoestring ferns, vittarioids (Pteridaceae) Systematic Botany. 41. DOI: 10.1600/036364416X690660  0.292
2020 Xu KW, Zhang L, Rothfels CJ, Smith AR, Viane R, Lorence D, Wood KR, Chen CW, Knapp R, Zhou L, Lu NT, Zhou XM, Wei HJ, Fan Q, Chen SF, et al. A global plastid phylogeny of the fern genus Asplenium (Aspleniaceae). Cladistics : the International Journal of the Willi Hennig Society. 36: 22-71. PMID 34618950 DOI: 10.1111/cla.12384  0.286
2020 Windham MD, Pryer KM, Poindexter DB, Li FW, Rothfels CJ, Beck JB. A step-by-step protocol for meiotic chromosome counts in flowering plants: A powerful and economical technique revisited. Applications in Plant Sciences. 8: e11342. PMID 33224637 DOI: 10.1002/aps3.11342  0.284
2016 Li FW, Kuo LY, Pryer KM, Rothfels CJ. Genes translocated into the plastid inverted repeat show decelerated substitution rates and elevated GC content. Genome Biology and Evolution. PMID 27401175 DOI: 10.1093/gbe/evw167  0.272
2017 Chen CW, Rothfels CJ, Mustapeng AMA, Gubilil M, Karger DN, Kessler M, Huang YM. End of an enigma: Aenigmopteris belongs in Tectaria (Tectariaceae: Polypodiopsida). Journal of Plant Research. PMID 28741041 DOI: 10.1007/s10265-017-0966-9  0.261
2018 Mutte SK, Kato H, Rothfels C, Melkonian M, Wong GK, Weijers D. Author response: Origin and evolution of the nuclear auxin response system Elife. DOI: 10.7554/Elife.33399.035  0.26
2018 Wolf PG, Robison TA, Johnson MG, Sundue MA, Testo WL, Rothfels CJ. Target sequence capture of nuclear-encoded genes for phylogenetic analysis in ferns. Applications in Plant Sciences. 6: e01148. PMID 30131890 DOI: 10.1002/aps3.1148  0.259
2023 Freyman WA, Rothfels CJ. Phasing Gene Copies into Polyploid Subgenomes Using a Bayesian Phylogenetic Approach. Methods in Molecular Biology (Clifton, N.J.). 2545: 123-138. PMID 36720810 DOI: 10.1007/978-1-0716-2561-3_6  0.238
2024 Wefferling KM, Castro M, Castro S, Holmlund H, Loureiro J, Rothfels CJ, Schuettpelz E. Polyploid goldback and silverback ferns (Pentagramma) occupy a wider, colder, and wetter bioclimatic niche than diploid counterparts. American Journal of Botany. 111: e16305. PMID 38517199 DOI: 10.1002/ajb2.16305  0.228
2016 Rothfels CJ, Pryer KM, Li FW. Next-generation polyploid phylogenetics: rapid resolution of hybrid polyploid complexes using PacBio single-molecule sequencing. The New Phytologist. PMID 27463214 DOI: 10.1111/nph.14111  0.222
2015 Rothfels CJ, Li FW, Sigel EM, Huiet L, Larsson A, Burge DO, Ruhsam M, Deyholos M, Soltis DE, Stewart CN, Shaw SW, Pokorny L, Chen T, dePamphilis C, DeGironimo L, et al. The evolutionary history of ferns inferred from 25 low-copy nuclear genes. American Journal of Botany. 102: 1089-107. PMID 26199366 DOI: 10.3732/Ajb.1500089  0.21
2015 Zhang L, Rothfels CJ, Ebihara A, Schuettpelz E, Le Péchon T, Kamau P, He H, Zhou XM, Prado J, Field A, Yatskievych G, Gao XF, Zhang LB. A global plastid phylogeny of the brake fern genus Pteris (Pteridaceae) and related genera in the Pteridoideae Cladistics. 31: 406-423. DOI: 10.1111/cla.12094  0.204
2016 Li FW, Kuo LY, Chang YH, Hsu TC, Hung HC, Chiou WL, Rothfels CJ, Huang YM. Asplenium pifongia (Aspleniaceae: Polypodiales), a new species from Taiwan Systematic Botany. 41. DOI: 10.1600/036364416X690723  0.195
2016 Hsu PY, Calviello L, Wu HL, Li FW, Rothfels CJ, Ohler U, Benfey PN. Super-resolution ribosome profiling reveals unannotated translation events in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. PMID 27791167 DOI: 10.1073/Pnas.1614788113  0.183
2019 Kao TT, Pryer KM, Freund FD, Windham MD, Rothfels CJ. Low-copy nuclear sequence data confirm complex patterns of farina evolution in notholaenid ferns (Pteridaceae). Molecular Phylogenetics and Evolution. PMID 31112780 DOI: 10.1016/j.ympev.2019.05.016  0.182
2020 Jordon-Thaden IE, Beck JB, Rushworth CA, Windham MD, Diaz N, Cantley JT, Martine CT, Rothfels CJ. A basic ddRADseq two-enzyme protocol performs well with herbarium and silica-dried tissues across four genera. Applications in Plant Sciences. 8: e11344. PMID 32351803 DOI: 10.1002/Aps3.11344  0.174
2015 Zhou XM, Rothfels CJ, Zhang L, He ZR, Le Péchon T, He H, Lu NT, Knapp R, Lorence D, He XJ, Gao XF, Zhang LB. A large-scale phylogeny of the lycophyte genus Selaginella (Selaginellaceae: Lycopodiopsida) based on plastid and nuclear loci Cladistics. DOI: 10.1111/cla.12136  0.16
2013 León B, Rothfels CJ, Arakaki M, Young KR, Pryer KM. Revealing a cryptic fern distribution through DNA sequencing: Pityrogramma trifoliata in the Western Andes of Peru American Fern Journal. 103: 40-48. DOI: 10.1640/0002-8444-103.1.40  0.159
2023 Schafran P, Li FW, Rothfels CJ. PURC Provides Improved Sequence Inference for Polyploid Phylogenetics and Other Manifestations of the Multiple-Copy Problem. Methods in Molecular Biology (Clifton, N.J.). 2545: 189-206. PMID 36720814 DOI: 10.1007/978-1-0716-2561-3_10  0.155
2012 Rothfels CJ, Larsson A, Kuo LY, Korall P, Chiou WL, Pryer KM. Overcoming deep roots, fast rates, and short internodes to resolve the ancient rapid radiation of eupolypod II ferns. Systematic Biology. 61: 490-509. PMID 22223449 DOI: 10.1093/sysbio/sys001  0.136
2014 Rothfels CJ, Schuettpelz E. Accelerated rate of molecular evolution for vittarioid ferns is strong and not driven by selection. Systematic Biology. 63: 31-54. PMID 23963353 DOI: 10.1093/sysbio/syt058  0.134
2014 Sundue MA, Rothfels CJ. Stasis and convergence characterize morphological evolution in eupolypod II ferns. Annals of Botany. 113: 35-54. PMID 24197753 DOI: 10.1093/aob/mct247  0.12
2014 Rothfels CJ, Johnson AK, Windham MD, Pryer KM. Low-copy nuclear data confirm rampant allopolyploidy in the cystopteridaceae (Polypodiales) Taxon. 63: 1026-1036. DOI: 10.12705/635.32  0.11
2012 Johnson AK, Rothfels CJ, Windham MD, Pryer KM. Unique expression of a sporophytic character on the gametophytes of notholaenid ferns (Pteridaceae). American Journal of Botany. 99: 1118-24. PMID 22542903 DOI: 10.3732/ajb.1200049  0.082
2010 Pryer KM, Schuettpelz E, Huiet L, Grusz AL, Rothfels CJ, Avent T, Schwartz D, Windham MD. DNA barcoding exposes a case of mistaken identity in the fern horticultural trade. Molecular Ecology Resources. 10: 979-85. PMID 21565107 DOI: 10.1111/j.1755-0998.2010.02858.x  0.036
2020 Kao TT, Rothfels CJ, Melgoza-Castillo A, Pryer KM, Windham MD. Infraspecific diversification of the star cloak fern (Notholaena standleyi) in the deserts of the United States and Mexico. American Journal of Botany. PMID 32253761 DOI: 10.1002/ajb2.1461  0.035
2011 Li FW, Kuo LY, Rothfels CJ, Ebihara A, Chiou WL, Windham MD, Pryer KM. rbcL and matK earn two thumbs up as the core DNA barcode for ferns. Plos One. 6: e26597. PMID 22028918 DOI: 10.1371/journal.pone.0026597  0.033
2012 Rothfels CJ, Sundue MA, Kuo LY, Larsson A, Kato M, Schuettpelz E, Pryer KM. A revised family-level classification for eupolypod II ferns (Polypodiidae: Polypodiales) Taxon. 61: 515-533.  0.033
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